# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_45.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_45 [L=184] Description: # 58138 # 58689 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.348 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.8e-25 87.6 0.1 2.3e-24 86.0 0.1 1.6 1 LUD_dom LUD domain Domain annotation for each model (and alignments): >> LUD_dom LUD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.0 0.1 1.4e-28 2.3e-24 2 189 .] 10 180 .. 9 180 .. 0.89 Alignments for each domain: == domain 1 score: 86.0 bits; conditional E-value: 1.4e-28 LUD_dom 2 eefienleangaevyyaktaeealelilellkeksv..vseggstdlgeiglapalhsgreevldlfeekltreareelrekflt 84 e f++nle+++++ ++ + +e+ + i el ke++v +s s l+e g+ + l+ +++ +++r +++t 23726_FusoPortal_Gene_45 10 ESFKRNLESVNGNCMRTPK-AELGKVITELFKEHNVdsISLFESPMLKEAGVVSSLQ-----------QNGITVHTDHIRLHAET 82 789****************.**************99545555555556666644444...........33335556779****** PP LUD_dom 85 advgitganfaiAetGtlvlvdnegnrraltflpkvhivvvginkivpdledavkrlktaprnatrlqkktpyvsfisgpsrtad 169 + g++ a+ +iAe Gt+v +++ +r++ ++ + +i vv+ ++ivp+ +d++++l +k+++ v fi+gpsrtad 23726_FusoPortal_Gene_45 83 DKGGLSEAQHGIAELGTIVQEQDNADGRMVATMSEYYIGVVKGSTIVPTYDDMFDILSG-------MKKIPNFVGFITGPSRTAD 160 ***********************************************************.......89***************** PP LUD_dom 170 ielvlvygvhgpkrihvilv 189 ie v ++gvhgp ++ +++v 23726_FusoPortal_Gene_45 161 IECVGTVGVHGPIDVSIVIV 180 ******************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (184 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 349 (0.0208832); expected 334.2 (0.02) Passed bias filter: 317 (0.0189684); expected 334.2 (0.02) Passed Vit filter: 15 (0.000897559); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.31 # Mc/sec: 1725.46 // [ok]