# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_463.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_463 [L=166] Description: # 507805 # 508302 # 1 # ID=1_463;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.285 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-32 106.2 8.6 2.6e-07 30.0 0.2 5.3 5 MORN_2 MORN repeat variant ------ inclusion threshold ------ 0.017 14.3 0.3 0.062 12.5 0.3 1.9 2 FAM194 FAM194 protein 0.073 12.9 7.7 2.4 8.1 0.4 3.5 3 DUF4982 Domain of unknown function (DUF4982) 0.14 12.0 2.7 41 4.2 0.0 4.4 5 MORN MORN repeat Domain annotation for each model (and alignments): >> MORN_2 MORN repeat variant # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.4 0.1 0.0028 12 2 22 .] 44 64 .. 43 64 .. 0.89 2 ! 25.9 0.0 1.4e-09 5.8e-06 1 22 [] 67 88 .. 67 88 .. 0.96 3 ! 20.9 0.2 5.7e-08 0.00024 1 22 [] 91 112 .. 91 112 .. 0.96 4 ! 30.0 0.2 6.2e-11 2.6e-07 1 22 [] 115 136 .. 115 136 .. 0.97 5 ! 25.0 0.0 2.7e-09 1.1e-05 1 22 [] 139 160 .. 139 160 .. 0.97 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.0028 MORN_2 2 eGeekeYyenGklkeeltYkn 22 +G+ ++Y e G l+ ++ kn 23726_FusoPortal_Gene_463 44 TGVIETYNEKGVLEAKADIKN 64 6999**********9998777 PP == domain 2 score: 25.9 bits; conditional E-value: 1.4e-09 MORN_2 1 leGeekeYyenGklkeeltYkn 22 ++G k Yy++Gkl++e+t+kn 23726_FusoPortal_Gene_463 67 MDGSSKIYYPSGKLQSEATFKN 88 5899*****************9 PP == domain 3 score: 20.9 bits; conditional E-value: 5.7e-08 MORN_2 1 leGeekeYyenGklkeeltYkn 22 + G++k Y e+Gklk el+Ykn 23726_FusoPortal_Gene_463 91 QVGVQKDYTEDGKLKLELPYKN 112 57*******************9 PP == domain 4 score: 30.0 bits; conditional E-value: 6.2e-11 MORN_2 1 leGeekeYyenGklkeeltYkn 22 l+G++k+Yy+nGk++ e++Ykn 23726_FusoPortal_Gene_463 115 LDGVVKSYYPNGKIEIEEPYKN 136 69*******************9 PP == domain 5 score: 25.0 bits; conditional E-value: 2.7e-09 MORN_2 1 leGeekeYyenGklkeeltYkn 22 ++G++k Y+enGk+ +++t+kn 23726_FusoPortal_Gene_463 139 RDGVAKAYDENGKVVQQATFKN 160 69*******************9 PP >> FAM194 FAM194 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.3 1.5e-05 0.062 20 33 .. 67 80 .. 52 128 .. 0.84 2 ? 0.1 0.0 0.094 3.9e+02 21 37 .. 116 132 .. 91 162 .. 0.65 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 1.5e-05 FAM194 20 pDGsgqvfYPSGnl 33 DGs+ ++YPSG+l 23726_FusoPortal_Gene_463 67 MDGSSKIYYPSGKL 80 6***********97 PP == domain 2 score: 0.1 bits; conditional E-value: 0.094 FAM194 21 DGsgqvfYPSGnlAili 37 DG +YP G++ i 23726_FusoPortal_Gene_463 116 DGVVKSYYPNGKIEIEE 132 67777789998887644 PP >> DUF4982 Domain of unknown function (DUF4982) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 0.1 0.019 78 43 56 .. 52 66 .. 29 68 .. 0.85 2 ? 8.1 0.4 0.00057 2.4 18 56 .. 86 127 .. 82 132 .. 0.83 3 ? 4.7 0.3 0.0066 28 41 59 .. 133 154 .. 123 156 .. 0.79 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.019 -SSEEEEEEE.ETTE CS DUF4982 43 epGeLkAvay.knGk 56 e+G+L+A+a knG+ 23726_FusoPortal_Gene_463 52 EKGVLEAKADiKNGQ 66 99*******999997 PP == domain 2 score: 8.1 bits; conditional E-value: 0.00057 EETTEEEEEE..E-SSS-EEEEEEB-SSEEE..EEEE.ETTE CS DUF4982 18 flNGkslGrkkkkekdyrltWdvpyepGeLk..Avay.knGk 56 f N ++G +k ++d +l+ + py+ G+L +++y nGk 23726_FusoPortal_Gene_463 86 FKNNVQVGVQKDYTEDGKLKLELPYKNGKLDgvVKSYyPNGK 127 669999******999**************9622556666666 PP == domain 3 score: 4.7 bits; conditional E-value: 0.0066 EB-SSE..EEEEEE.ETTEEEE CS DUF4982 41 pyepGe..LkAvay.knGkeva 59 py+ Ge A+ay +nGk+v 23726_FusoPortal_Gene_463 133 PYKNGErdGVAKAYdENGKVVQ 154 67777766679*********97 PP >> MORN MORN repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 0.0 0.0099 41 6 21 .. 63 78 .. 61 79 .. 0.89 2 ? -1.7 0.0 0.78 3.3e+03 4 12 .. 85 93 .. 83 94 .. 0.79 3 ? 1.7 0.1 0.065 2.7e+02 5 21 .. 110 126 .. 110 128 .. 0.79 4 ? 2.3 0.0 0.04 1.7e+02 5 21 .. 134 150 .. 134 152 .. 0.79 5 ? -0.9 0.0 0.42 1.8e+03 4 9 .. 157 162 .. 155 163 .. 0.75 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.0099 MORN 6 knGkrhGkGvytwpdG 21 knG+++G+ + ++p+G 23726_FusoPortal_Gene_463 63 KNGQMDGSSKIYYPSG 78 8******999999988 PP == domain 2 score: -1.7 bits; conditional E-value: 0.78 MORN 4 eWknGkrhG 12 ++kn+ G 23726_FusoPortal_Gene_463 85 TFKNNVQVG 93 799999877 PP == domain 3 score: 1.7 bits; conditional E-value: 0.065 MORN 5 WknGkrhGkGvytwpdG 21 +knGk +G + ++p+G 23726_FusoPortal_Gene_463 110 YKNGKLDGVVKSYYPNG 126 68999999877778877 PP == domain 4 score: 2.3 bits; conditional E-value: 0.04 MORN 5 WknGkrhGkGvytwpdG 21 +knG r+G + + +G 23726_FusoPortal_Gene_463 134 YKNGERDGVAKAYDENG 150 69******887776666 PP == domain 5 score: -0.9 bits; conditional E-value: 0.42 MORN 4 eWknGk 9 ++knGk 23726_FusoPortal_Gene_463 157 TFKNGK 162 689997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (166 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 575 (0.0344064); expected 334.2 (0.02) Passed bias filter: 380 (0.0227382); expected 334.2 (0.02) Passed Vit filter: 28 (0.00167544); expected 16.7 (0.001) Passed Fwd filter: 4 (0.000239349); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.23u 0.24s 00:00:00.47 Elapsed: 00:00:00.32 # Mc/sec: 1508.02 // [ok]