# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_468.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_468 [L=1721] Description: # 511895 # 517057 # -1 # ID=1_468;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.267 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-51 175.0 1.3 2.1e-51 174.2 0.2 2.1 2 DUF4132 Domain of unknown function (DUF4132) Domain annotation for each model (and alignments): >> DUF4132 Domain of unknown function (DUF4132) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.1 0.0 0.16 2.6e+03 17 63 .. 14 58 .. 6 63 .. 0.79 2 ! 174.2 0.2 1.3e-55 2.1e-51 1 179 [] 1356 1528 .. 1356 1528 .. 0.96 Alignments for each domain: == domain 1 score: -2.1 bits; conditional E-value: 0.16 DUF4132 17 vakelkelkkelkeqasrqrarLeeamvsgrvwtaeewqelllehpv 63 + k +++kk+ k+ ++ + +e+++++++ t+ +++ +l++ + 23726_FusoPortal_Gene_468 14 E-KFVEKIKKDSKKLDKENQKFIEDIFLTEKDGTYYSYAA-YLKNAI 58 3.56678999******************999888888888.776665 PP == domain 2 score: 174.2 bits; conditional E-value: 1.3e-55 DUF4132 1 GKrlksvPaklkkddavakelkelkkelkeqasrqrarLeeamvsgrvwtaeewqelllehpvlgdlvrrLvwkvyeegeal 82 GK+lks+P klkkd+++ +++ke++k+lkeq++r r++Leeam++g+++ e+++ l+++pv+ +++++Lv+k+ +++ 23726_FusoPortal_Gene_468 1356 GKELKSLPTKLKKDKYI-EAIKEVHKNLKEQYRRSRKMLEEAMEDGTEFYGYEIEN-LMTNPVIAPILKSLVFKM--GND-- 1431 9****************.**************************************.******************..233.. PP DUF4132 83 lrafr.edgslvdlddeevelkedakvrlaHPvel.eaeelaawqelladyeivQpfkQlfRevyvlteeereteeserfag 162 d++l +++++v +k+d+ +++aH+++l e++e++++q+ ++d+e++QpfkQ+fRe+yv+t +e+ +++s r+ag 23726_FusoPortal_Gene_468 1432 --LGYyVDKKLKSAKKKSVAIKDDSLLKIAHCFDLfESGEWSNYQKDIFDRELKQPFKQVFRELYVKTVDEKGRDKSLRYAG 1511 ..2234688999********************************************************************** PP DUF4132 163 hqiqpkkllallrkrgW 179 hq+qp k++all++r+W 23726_FusoPortal_Gene_468 1512 HQVQPAKTVALLKTRRW 1528 ***************** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1721 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1695 (0.101424); expected 334.2 (0.02) Passed bias filter: 468 (0.0280038); expected 334.2 (0.02) Passed Vit filter: 35 (0.0020943); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.34 # Mc/sec: 14714.71 // [ok]