# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_476.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_476 [L=418] Description: # 522073 # 523326 # -1 # ID=1_476;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.281 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.4e-74 249.5 32.1 5.2e-74 249.3 32.1 1.0 1 FTSW_RODA_SPOVE Cell cycle protein ------ inclusion threshold ------ 6.6 6.5 7.7 14 5.4 0.2 3.1 3 PhoLip_ATPase_N Phospholipid-translocating ATPase N-terminal Domain annotation for each model (and alignments): >> FTSW_RODA_SPOVE Cell cycle protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 249.3 32.1 6.2e-78 5.2e-74 4 357 .. 44 414 .. 41 416 .. 0.84 Alignments for each domain: == domain 1 score: 249.3 bits; conditional E-value: 6.2e-78 FTSW_RODA_SPOVE 4 lllvllllvilGlvmiysa.slveslvlfgdsfvlfirqlvylllglivfvlllriplk.....fleklakllli...islllL 78 ++ ++l+l+i+Gl+ ++s+ s +++++ + +++q + l ++l++f+ ++r ++ + k ++ +++ + ++ L 23726_FusoPortal_Gene_476 44 IISFFLILMIIGLINFLSSiSRFDNARILD----KIVKQSAILGVSLLIFFTTSRSKFGniiykIISKPSFRIFVllsSLIIFL 123 6677888999****8776515566666666....78999999*******99999866544433355555555544111345556 PP FTSW_RODA_SPOVE 79 vlvkvp...lgssanGAkrWirlggisiqPsEfvkialilflAavlskk..kkevksrlrellillvivll.ilvlillqpdlg 156 ++ vp l +++nG k W+++g +siq E++ki +i++lA++ls+ +k++ +++++l+ l ++++ ++ + ++ +d+g 23726_FusoPortal_Gene_476 124 IIAYVPsesLFPTINGGKGWVHIGPVSIQVPEIFKIPFIMVLANILSRGkdDKKKIEYMQNLVSVLFYTAIfAITITICLQDMG 207 66667788999************************************973333444566677777775554155677899**** PP FTSW_RODA_SPOVE 157 tavllliillvvlflsglslklilaivlalilviaivll...illedyqvkrvtslldpfkdpl...gsgYqviqsliAigsGG 234 ta+ ++i+ +++fls ++ kli+ ++ ++++ i+i+l+ + l+ y+ +r+ +ld + ++ Yq+ qsliA+g+GG 23726_FusoPortal_Gene_476 208 TAIHYFMIASFMIFLSDIPNKLIFPAFFGILASIPILLYiflHTLSGYKQHRIKVFLDGILHSNydrEEAYQIYQSLIAFGTGG 291 **************************9996666666665566889999**********8766555669**************** PP FTSW_RODA_SPOVE 235 llGkGlgnsqqkleyLPeahtDfIfavigEelGlvGvllllllffllivrglriarkakdrfgsllavgivllivvqsfinigm 318 +lGkG+gn++qk++y+Pe +tDf +a +Ee G++G++l+l+lff l++ ++ +a+k+k+ f++ l gi+ ++ q++inig+ 23726_FusoPortal_Gene_476 292 VLGKGFGNGVQKYNYIPEVETDFAIATYAEETGFIGMILVLFLFFSLFFLIMGVANKSKNYFSKYLVGGIAGYFITQVIINIGV 375 ************************************************************************************ PP FTSW_RODA_SPOVE 319 vlGllPvtGltlPflSyGGsSllalliligillnisree 357 ++Gl+Pv G++lPf+S+GGsSlla++i++g+++ +++ + 23726_FusoPortal_Gene_476 376 AIGLIPVFGIPLPFISSGGSSLLAISIAMGLVIYVNNTQ 414 ********************************9998765 PP >> PhoLip_ATPase_N Phospholipid-translocating ATPase N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.0 0.0025 21 44 64 .. 46 66 .. 34 69 .. 0.85 2 ? 5.4 0.2 0.0017 14 8 54 .. 175 221 .. 166 228 .. 0.83 3 ? -3.3 0.9 0.9 7.5e+03 43 51 .. 337 345 .. 332 348 .. 0.72 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0025 PhoLip_ATPase_N 44 lYFLliailqliPqisplspv 64 +FL+++i+ li +s++s++ 23726_FusoPortal_Gene_476 46 SFFLILMIIGLINFLSSISRF 66 69**************99987 PP == domain 2 score: 5.4 bits; conditional E-value: 0.0017 PhoLip_ATPase_N 8 enekkkyasNkIkTsKYtvltFlpknLfeqFrrvaNlYFLliailql 54 +++k +y++N ++ Yt++ + + q + +a YF++ + + + 23726_FusoPortal_Gene_476 175 DKKKIEYMQNLVSVLFYTAIFAITITICLQDMGTAIHYFMIASFMIF 221 344459**********************************8876655 PP == domain 3 score: -3.3 bits; conditional E-value: 0.9 PhoLip_ATPase_N 43 NlYFLliai 51 l+FL++ + 23726_FusoPortal_Gene_476 337 SLFFLIMGV 345 578888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (418 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1336 (0.0799426); expected 334.2 (0.02) Passed bias filter: 552 (0.0330302); expected 334.2 (0.02) Passed Vit filter: 45 (0.00269268); expected 16.7 (0.001) Passed Fwd filter: 8 (0.000478698); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.30 # Mc/sec: 4050.46 // [ok]