# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_483.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_483 [L=175] Description: # 527562 # 528086 # 1 # ID=1_483;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.343 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.09 11.3 3.3 0.1 11.1 3.3 1.3 1 DUF3138 Protein of unknown function (DUF3138) 0.44 10.5 9.5 1.8 8.6 5.4 2.3 2 DUF5469 Family of unknown function (DUF5469) 0.88 8.2 15.7 1.2 7.7 15.7 1.3 1 Presenilin Presenilin 1.4 9.6 23.2 0.57 10.9 4.3 3.0 2 SUZ SUZ domain 2.3 6.5 23.5 2.8 6.2 23.5 1.1 1 Borrelia_P83 Borrelia P83/100 protein 2.5 6.9 11.7 3.1 6.6 11.7 1.2 1 SLC12 Solute carrier family 12 2.6 5.9 14.0 3.1 5.7 14.0 1.0 1 Hid1 High-temperature-induced dauer-formation protei 3 7.7 7.7 12 5.7 0.1 2.7 2 PDGLE PDGLE domain 4.9 7.3 11.5 6.5 6.9 11.5 1.3 1 Hydin_ADK Hydin Adenylate kinase-like domain 5 7.1 11.5 6.5 6.7 11.5 1.2 1 DDHD DDHD domain 6.8 7.1 9.5 8.2 6.8 9.5 1.1 1 SOBP Sine oculis-binding protein Domain annotation for each model (and alignments): >> DUF3138 Protein of unknown function (DUF3138) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 3.3 6.8e-05 0.1 1 103 [. 1 111 [. 1 158 [. 0.74 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 6.8e-05 DUF3138 1 mkkklisvl.valaldglaaaaatadrikalkaqltalqrq.vkelraalaaak.aaaGgk...issqkaaaaaaaaaeaaaal 78 mkkkl+ vl ++ l +la a+a ad+++ q ++ q+q v e ++++ ++ aG+ +s + a aa +a a + 23726_FusoPortal_Gene_483 1 MKKKLFGVLlFSMVLSSLAYAEADADKMRERMEQREKEQQQgVVENSSSVEKSNeNVAGTTstnLSLEEEREAYAALERARARI 84 889998775157899*************99888888877775778888887655244554300033344444555556777777 PP DUF3138 79 teddvaqlk..eqianaelkvdalqea 103 ++++++lk +++a+a+ +++a +e+ 23726_FusoPortal_Gene_483 85 EKEEQEKLKaqQEMAEAQNQMEAQTET 111 777777776225678888777776654 PP >> DUF5469 Family of unknown function (DUF5469) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 0.1 0.043 65 23 56 .. 8 41 .. 4 57 .. 0.73 2 ? 8.6 5.4 0.0012 1.8 39 85 .. 85 130 .. 78 133 .. 0.91 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 0.043 DUF5469 23 llflivffffkssplqekeillkelerkkkfeek 56 +l + ++ + + + +++++++e+ +k++++ 23726_FusoPortal_Gene_483 8 VLLFSMVLSSLAYAEADADKMRERMEQREKEQQQ 41 4455556666668888999999999999998876 PP == domain 2 score: 8.6 bits; conditional E-value: 0.0012 DUF5469 39 ekeillkelerkkkfeekqkelkkkvdsiykkIdsLkpevnavflen 85 eke++ ++l++++++ e q++++ + ++ ++ + +p++n+vf e+ 23726_FusoPortal_Gene_483 85 EKEEQ-EKLKAQQEMAEAQNQMEAQTETMAEQTANENPNQNQVFVEE 130 45555.9*************************************997 PP >> Presenilin Presenilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 15.7 0.00077 1.2 208 303 .. 3 116 .. 1 172 [. 0.46 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.00077 Presenilin 208 eeifpaLiYsaevvvlaaeeea.ekaevakaeeeeeaekkeeeaseeskeeeseeesseksaqsse.................. 272 +++f L++s la +e +k++++++++e+e+++ e+s++ ++++++ + ++s++ + 23726_FusoPortal_Gene_483 3 KKLFGVLLFSMVLSSLAYAEADaDKMRERMEQREKEQQQGVVENSSSVEKSNENV-AGTTSTN-LSleeereayaalerarari 84 6788889998777666444333344444444443333333333322222222222.2222222.11334555666666665544 PP Presenilin 273 .........seeeeeeesaeaessaeesseekeeeesses 303 +++ ++a+++ e ++e++++++ 23726_FusoPortal_Gene_483 85 ekeeqeklkA--------QQEMAEAQNQMEAQTETMAEQT 116 3211111110........1111111111111111111111 PP >> SUZ SUZ domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 11.0 0.072 1.1e+02 17 52 .. 46 84 .. 21 89 .. 0.62 2 ? 10.9 4.3 0.00038 0.57 35 57 .] 116 159 .. 86 159 .. 0.66 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 0.072 SUZ 17 ssssrgssgasssesssss..........ktleEREaeYa...eARaRI 52 +sss ++s + ++leE ++Ya +ARaRI 23726_FusoPortal_Gene_483 46 NSSSVEKS----------NenvagttstnLSLEEEREAYAaleRARARI 84 22222222..........12344455556**********73337****9 PP == domain 2 score: 10.9 bits; conditional E-value: 0.00038 SUZ 35 s..................ktleEREaeYa...eARaRIFgsfs 57 + +t eE +++Y+ ++RaRI+ +++ 23726_FusoPortal_Gene_483 116 TanenpnqnqvfveestprMTPEEEKEAYEaleRVRARILKEDE 159 1233344455667777777**********73337******9875 PP >> Borrelia_P83 Borrelia P83/100 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 23.5 0.0018 2.8 236 349 .. 18 144 .. 14 163 .. 0.77 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0018 Borrelia_P83 236 adtaednadkqrkevreklqeaknlpepadvsskkedkkva............eekkreiekaqkeikkkdeeakkakdakaed 307 + ae++adk r+ ++++ +e+++ + + s +k +++va e +e+a+ i+k+++e +ka+++ ae 23726_FusoPortal_Gene_483 18 LAYAEADADKMRERMEQREKEQQQGVVENSSSVEKSNENVAgttstnlsleeeREAYAALERARARIEKEEQEKLKAQQEMAEA 101 56799999**99999999999888888888888888888855555556654213334568********************9999 PP Borrelia_P83 308 lkkeskaeekeaedkelea.kkereevaeDlqkikeevkakkt 349 ++ + e +ae+ +e ++++ v e + ++ +e + ++ 23726_FusoPortal_Gene_483 102 QNQMEAQTETMAEQTANENpNQNQVFVEESTPRMTPEEEKEAY 144 8887777788888877665156667788899999998887765 PP >> SLC12 Solute carrier family 12 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 11.7 0.002 3.1 144 209 .. 34 121 .. 7 169 .. 0.35 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.002 SLC12 144 eaeeseas...kesseekkkakkkklke........................ekskekeekekleekdsnlslseekkeeekek 200 ++e+++++ ++ss+ +k+++ + + + ekee+ekl+ +++ ++ +++++ ++++ 23726_FusoPortal_Gene_483 34 QREKEQQQgvvENSSSVEKSNE-----NvagttstnlsleeereayaaleraRARIEKEEQEKLKAQQEMAEAQNQMEAQTETM 112 1111111111111111111111.....011122233334444444444433322222222222222222222222222111111 PP SLC12 201 kkekkkkke 209 ++++ +++ 23726_FusoPortal_Gene_483 113 AEQTANENP 121 111111111 PP >> Hid1 High-temperature-induced dauer-formation protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 14.0 0.0021 3.1 558 686 .. 11 132 .. 4 156 .. 0.41 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0021 Hid1 558 Ysilrkrkvfealanltldsaseeiersnesarldsideeeeenssesseieenrsesrspslsevpelksslaitddeskate 641 +s++ + + + ++ ++e++e++++ + enss+ ++++en ++ s +ls ++e ++ a + ++ ++ 23726_FusoPortal_Gene_483 11 FSMVLSSLAYAEADADKMRERMEQREKEQQ--------QGVVENSSSVEKSNENVAGTTSTNLSLEEEREAYAALERARARIEK 86 444444444444444444444444444444........3333333333344443334344434433333333344444444443 PP Hid1 642 eksatessssqavs.......qlremsekarakesaesteesrqesatskks 686 e++++ ++++++++ q+++m+e+ +++++++++ + + +++ 23726_FusoPortal_Gene_483 87 EEQEKLKAQQEMAEaqnqmeaQTETMAEQTANENPNQNQVFVE------EST 132 3333333333333310111114444444444444444443332......222 PP >> PDGLE PDGLE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 0.1 0.0082 12 4 49 .. 9 52 .. 7 67 .. 0.78 2 ? 2.9 4.3 0.063 96 20 64 .. 76 122 .. 71 172 .. 0.83 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.0082 PDGLE 4 lliggvlswfAsanPdGLEwsiekvagtaeleasgdlhealaeiqe 49 ll +vls +A a++d + e+++ ++e e+++++ e+ +++++ 23726_FusoPortal_Gene_483 9 LLFSMVLSSLAYAEADA-DKMRERME-QREKEQQQGVVENSSSVEK 52 78899************.88888864.4577777777777666655 PP == domain 2 score: 2.9 bits; conditional E-value: 0.063 PDGLE 20 GLEwsiekv..agtaeleasgdlhealaeiqektalLpDYsfkgaee 64 LE++ +++ +++++l+a++++ ea+++++++t +++ + +++++ 23726_FusoPortal_Gene_483 76 ALERARARIekEEQEKLKAQQEMAEAQNQMEAQTETMAEQTANENPN 122 58999999964445578889999999999999999998766666655 PP >> Hydin_ADK Hydin Adenylate kinase-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 11.5 0.0043 6.5 62 162 .. 32 131 .. 17 171 .. 0.61 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0043 Hydin_ADK 62 ekekeeaaeeaekkegqastglssealvkktselssaaeekaasskiskkkktsvvsg.kkkaeshgaksqkqkhkktsetais 144 + e+ e+++++ +e+++s+ s+e+++ +ts s +ee +++ ++ +++++ + ++ ++k ++++ + + q++ + +++++ 23726_FusoPortal_Gene_483 32 M-EQREKEQQQGVVENSSSVEKSNENVAGTTSTNLSLEEE-REAYAALERARARIEKEeQEKLKAQQEMAEAQNQMEAQTETMA 113 1.22223333333444455669999999999965555555.4444444445555555434444555555555555555555555 PP Hydin_ADK 145 sspplaapiarrLsvsas 162 + ++ p + ++ v s 23726_FusoPortal_Gene_483 114 EQTANENPNQNQVFVEES 131 555556666666655544 PP >> DDHD DDHD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 11.5 0.0043 6.5 93 179 .. 27 130 .. 7 172 .. 0.44 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.0043 DDHD 93 elkesltsigaalkqkvsglvsslss.......llnrslklgeeesakl..........aesqksherssesskesqeskaaes 159 +++e +++ +++ +q v++ ss+++ + +++l+l+ee++a + +e+q++ ++++e +++++ +a+++ 23726_FusoPortal_Gene_483 27 KMRERMEQREKEQQQGVVENSSSVEKsnenvagTTSTNLSLEEEREAYAalerararieKEEQEKLKAQQEMAEAQNQMEAQTE 110 445555555555555555555555444555554223333333332222222222222213333333333333333333333333 PP DDHD 160 ssasssaksssaeekveled 179 + a++ a+++ ++++v +e+ 23726_FusoPortal_Gene_483 111 TMAEQTANENPNQNQVFVEE 130 33333333333333222222 PP >> SOBP Sine oculis-binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 9.5 0.0054 8.2 90 191 .. 33 133 .. 16 167 .. 0.47 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0054 SOBP 90 esvspepsksaspsssptssnsskplisvassskllaeksqepaslkesplepkksrkk.kpglrkrksrkassskssetkrgl 172 e+ ++e +++ ++s + ++s++ + ++s + +l+e+ ++ a+l++++ +++k++++ + ++++ +++ ++++++et +++ 23726_FusoPortal_Gene_483 33 EQREKE-QQQGVVENSSSVEKSNENVAGTTSTNLSLEEEREAYAALERARARIEKEEQEkLKAQQEMAEAQNQMEAQTETMAEQ 115 222222.23344444444455555555555555666666666666666666553333331233333333333444444444444 PP SOBP 173 lqkqqealplsaeleessv 191 + ++++++ + ++ees 23726_FusoPortal_Gene_483 116 TA-NENPNQNQVFVEESTP 133 22.2222222222222221 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (175 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 3536 (0.211584); expected 334.2 (0.02) Passed bias filter: 749 (0.0448181); expected 334.2 (0.02) Passed Vit filter: 146 (0.00873624); expected 16.7 (0.001) Passed Fwd filter: 49 (0.00293202); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.34 # Mc/sec: 1496.27 // [ok]