# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_485.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_485 [L=121] Description: # 530096 # 530458 # 1 # ID=1_485;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.242 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-11 44.0 0.2 2.2e-11 43.5 0.2 1.3 1 ArsC ArsC family 4.7e-09 36.2 1.5 4.9e-08 33.0 0.6 2.1 2 Glutaredoxin Glutaredoxin 0.002 17.6 2.3 0.0026 17.2 2.3 1.2 1 DUF5039 Domain of unknown function (DUF5039) 0.0095 16.2 0.3 0.017 15.4 0.3 1.5 1 DUF836 Glutaredoxin-like domain (DUF836) ------ inclusion threshold ------ 0.11 11.1 0.8 0.12 10.9 0.8 1.0 1 SWI-SNF_Ssr4 Fungal domain of unknown function (DUF1750) 0.25 10.7 0.9 7.1 6.0 0.0 2.4 2 TilS_C TilS substrate C-terminal domain 0.68 9.9 6.3 3.2 7.7 0.0 3.7 4 SapB_1 Saposin-like type B, region 1 Domain annotation for each model (and alignments): >> ArsC ArsC family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.5 0.2 9.1e-15 2.2e-11 5 63 .. 50 116 .. 9 117 .. 0.85 Alignments for each domain: == domain 1 score: 43.5 bits; conditional E-value: 9.1e-15 T......GCB-TTSHHHHHCT..CCCTTSBHHHHHHHHHH-GGGB-S-EEEESSEEEESSSCCGGGG CS x......xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ArsC 5 n......ellskrgttyreLn..ldkedlsedellelilenpsLirRPivvdgkrlqiGfneeeira 63 + ++++++g +yre + ++++e+e+l+l++ + +L++RP +v+ + + Gf+eee+++ 23726_FusoPortal_Gene_485 50 KskkelkKFFNTSGILYREMElkDKLPTMTEEEMLKLLATDGKLVKRPMIVTKDVILNGFKEEEWKK 116 045677799**********996558899*************************************97 PP >> Glutaredoxin Glutaredoxin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.0 0.6 2e-11 4.9e-08 1 45 [. 4 48 .. 4 53 .. 0.93 2 ? 2.3 0.0 0.079 1.9e+02 15 46 .. 55 92 .. 53 105 .. 0.66 Alignments for each domain: == domain 1 score: 33.0 bits; conditional E-value: 2e-11 EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHH CS Glutaredoxin 1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkels 45 +v f p C C+kak+ L+e+ v+f+e+d+ kd +elk++ 23726_FusoPortal_Gene_485 4 IVFFCYPKCSTCQKAKKWLQENSVEFTERDIVKDNPTEAELKKFY 48 789999************************************986 PP == domain 2 score: 2.3 bits; conditional E-value: 0.079 HHHHHHHTTGGEEEEEGCCSH..HHHHHHHHHH....T CS Glutaredoxin 15 akrlLkelgvkfeeidvdkde..eireelkels....g 46 k+++++ g+ ++e ++ + ee+ +l+ + 23726_FusoPortal_Gene_485 55 LKKFFNTSGILYREMELKDKLptMTEEEMLKLLatdgK 92 68999999999999999987335555555555455554 PP >> DUF5039 Domain of unknown function (DUF5039) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 2.3 1.1e-06 0.0026 33 99 .. 14 81 .. 8 96 .. 0.81 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 1.1e-06 DUF5039 33 yceannkyisindvdylkilveeerPaslevyrleykaakdeldkllntyk.eykelkkklke.avske 99 c+++ k+++ n v++ + + ++ P + e +++ yk++k+el+k++nt y+e++ k k ++++e 23726_FusoPortal_Gene_485 14 TCQKAKKWLQENSVEFTERDIVKDNPTEAE-LKKFYKKSKKELKKFFNTSGiLYREMELKDKLpTMTEE 81 6****************9999999999876.7889*************975268887766654134444 PP >> DUF836 Glutaredoxin-like domain (DUF836) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.4 0.3 7.3e-06 0.017 2 49 .. 4 51 .. 3 76 .. 0.78 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 7.3e-06 EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEETTT-CC....CHCCCCTT CS DUF836 2 ltLyskpgChlCeqakekLkelkleegleleviDIakdee....leakYgle 49 ++++ p+C+ C++ak+ L+ e+++e ++DI kd+ l++ Y+ 23726_FusoPortal_Gene_485 4 IVFFCYPKCSTCQKAKKWLQ----ENSVEFTERDIVKDNPteaeLKKFYKKS 51 889999**************....4567788****97665344466655554 PP >> SWI-SNF_Ssr4 Fungal domain of unknown function (DUF1750) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.8 4.8e-05 0.12 344 412 .. 19 85 .. 10 99 .. 0.82 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 4.8e-05 SWI-SNF_Ssr4 344 gkldpekaeeFrkrvaekveetkaeieklkaeHakrlaklkkssllkqaEkeLreavadpsetgseiwr 412 +k +e eF++r k + t+ae++k+ ++ +k+l+k+ ++s + E eL++ p+ t +e+++ 23726_FusoPortal_Gene_485 19 KKWLQENSVEFTERDIVKDNPTEAELKKFYKKSKKELKKFFNTSGILYREMELKDK--LPTMTEEEMLK 85 555567778999999889999*********************************97..45555555555 PP >> TilS_C TilS substrate C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.0 0.0 0.003 7.1 22 38 .. 17 33 .. 8 38 .. 0.87 2 ? 3.4 0.1 0.02 47 15 32 .. 47 64 .. 34 84 .. 0.84 Alignments for each domain: == domain 1 score: 6.0 bits; conditional E-value: 0.003 EHHHHHHHCT--HHHCC CS TilS_C 22 kLKklfqeagvPpwlRd 38 k Kk++qe v +Rd 23726_FusoPortal_Gene_485 17 KAKKWLQENSVEFTERD 33 77**********99998 PP == domain 2 score: 3.4 bits; conditional E-value: 0.02 TTSSSEEEHHHHHHHCT- CS TilS_C 15 agrggsrkLKklfqeagv 32 ++ +++LKk+f+ g+ 23726_FusoPortal_Gene_485 47 FYKKSKKELKKFFNTSGI 64 55678899****998776 PP >> SapB_1 Saposin-like type B, region 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.4 0.7 0.064 1.5e+02 2 14 .. 11 23 .. 10 28 .. 0.65 2 ? 7.7 0.0 0.0014 3.2 15 29 .. 33 47 .. 32 47 .. 0.89 3 ? -3.2 0.0 3.6 8.7e+03 21 30 .. 50 59 .. 49 60 .. 0.67 4 ? 0.1 0.0 0.32 7.7e+02 21 30 .. 78 87 .. 71 89 .. 0.86 Alignments for each domain: == domain 1 score: 2.4 bits; conditional E-value: 0.064 HHHHHHHHHHHHH CS SapB_1 2 eCdlCefvvkeve 14 C+ C+++ k+++ 23726_FusoPortal_Gene_485 11 KCSTCQKAKKWLQ 23 6888887655554 PP == domain 2 score: 7.7 bits; conditional E-value: 0.0014 HHH-SS--HHHHHHH CS SapB_1 15 klLkdNkTeeeIiea 29 + +kdN Te+e++++ 23726_FusoPortal_Gene_485 33 DIVKDNPTEAELKKF 47 789*********986 PP == domain 3 score: -3.2 bits; conditional E-value: 3.6 --HHHHHHHH CS SapB_1 21 kTeeeIieaL 30 k+++e++++ 23726_FusoPortal_Gene_485 50 KSKKELKKFF 59 6677887775 PP == domain 4 score: 0.1 bits; conditional E-value: 0.32 --HHHHHHHH CS SapB_1 21 kTeeeIieaL 30 Teee++++L 23726_FusoPortal_Gene_485 78 MTEEEMLKLL 87 599**99987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (121 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1479 (0.0884993); expected 334.2 (0.02) Passed bias filter: 641 (0.0383557); expected 334.2 (0.02) Passed Vit filter: 63 (0.00376975); expected 16.7 (0.001) Passed Fwd filter: 7 (0.000418861); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.26u 0.26s 00:00:00.52 Elapsed: 00:00:00.36 # Mc/sec: 977.09 // [ok]