# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_515.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_515 [L=114] Description: # 569867 # 570208 # 1 # ID=1_515;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.313 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-12 47.1 0.0 2.4e-12 46.5 0.0 1.2 1 BMC BMC domain Domain annotation for each model (and alignments): >> BMC BMC domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 46.5 0.0 1.5e-16 2.4e-12 1 70 [. 42 107 .. 42 110 .. 0.93 Alignments for each domain: == domain 1 score: 46.5 bits; conditional E-value: 1.5e-16 EEEEEEEESHHHHHHHHHHHHHHSSEEEEEEEECTTTCEEEEEEESHHHHHHHHHHHHHHHCHHEEEEEE CS BMC 1 AlGlietrglaaaieaaDaalKaAnVelvgvekvgggkvtviitGdvaaVkaAveagveaakgelvsshv 70 A+G++++++++aai+ aD a+K++++el +++++g t+++tGd a+V+++++a++e + +e ++ ++ 23726_FusoPortal_Gene_515 42 AIGILTITPGEAAIISADIAIKSGSIELGFLDRFSG---TLLLTGDFASVESSLKAVLEFL-KETLKFYI 107 9***********************************...********************99.66666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (114 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 279 (0.0166946); expected 334.2 (0.02) Passed bias filter: 258 (0.015438); expected 334.2 (0.02) Passed Vit filter: 9 (0.000538535); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.22u 0.25s 00:00:00.47 Elapsed: 00:00:00.33 # Mc/sec: 1004.25 // [ok]