# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_517.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_517 [L=193] Description: # 570638 # 571216 # 1 # ID=1_517;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.273 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-22 79.8 0.4 2.9e-22 78.9 0.4 1.5 1 Response_reg Response regulator receiver domain 8.8e-18 63.8 0.4 1.4e-17 63.1 0.4 1.4 1 ANTAR ANTAR domain Domain annotation for each model (and alignments): >> Response_reg Response regulator receiver domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 78.9 0.4 3.4e-26 2.9e-22 1 109 [. 5 113 .. 5 116 .. 0.96 Alignments for each domain: == domain 1 score: 78.9 bits; conditional E-value: 3.4e-26 EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHH CS Response_reg 1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseee 84 v++v+D+ l r l ++l+e+gy +v+ea+dg ea+e +k+ ++d++llDi++p ++Gl++++ ++ee + viilta++ e 23726_FusoPortal_Gene_517 5 VVVVEDETLTRIDLIEILKENGYDVVGEAADGIEAVEVCKKLQPDIVLLDIKIPYISGLKVANILKEEGFKGCVIILTAYNIAE 88 79********************************************************************************** PP HHHHHHHCTESEEEESSG-HHHHHH CS Response_reg 85 davealkagaddflsKpfdpeeLlk 109 +++ea + +++++ Kp+d+ l+ 23726_FusoPortal_Gene_517 89 YIQEASNTIVMGYILKPIDEVIFLE 113 ******************9866655 PP >> ANTAR ANTAR domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.1 0.4 1.7e-21 1.4e-17 2 54 .] 134 186 .. 133 186 .. 0.94 Alignments for each domain: == domain 1 score: 63.1 bits; conditional E-value: 1.7e-21 HHHHHHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHCTTTS-HHHHHHHH- CS ANTAR 2 qLeealeeRklieqAkgiLmeryglsedeAfrlLrklSmdsnvklrevAeavv 54 + +++leeRk+ie+Akgi+m++y lse+eA++ +r+lSm++++++ + e ++ 23726_FusoPortal_Gene_517 134 DTKKKLEERKVIERAKGIVMAKYTLSEEEAYKKMRDLSMQKRITMFKLSEIII 186 6799*****************************************99998775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (193 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 890 (0.0532551); expected 334.2 (0.02) Passed bias filter: 496 (0.0296793); expected 334.2 (0.02) Passed Vit filter: 46 (0.00275251); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.30 # Mc/sec: 1870.19 // [ok]