# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_521.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_521 [L=296] Description: # 575553 # 576440 # 1 # ID=1_521;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.318 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-82 276.6 0.1 1.5e-82 276.3 0.1 1.1 1 EutC Ethanolamine ammonia-lyase light chain (EutC) Domain annotation for each model (and alignments): >> EutC Ethanolamine ammonia-lyase light chain (EutC) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 276.3 0.1 8.8e-87 1.5e-82 3 233 .] 67 294 .. 65 294 .. 0.98 Alignments for each domain: == domain 1 score: 276.3 bits; conditional E-value: 8.8e-87 HHHHHHHH-SS--S---BTTB--HHHHHHHHHHHHHHHHHHH----HHHHHH.T-....EEEEBS--SHHHHTT-HHHHTSB-H CS EutC 3 aweklreltpariglgragsslptkellafqlahaaArdAvhseldeealae.eleelglevksaakdreeyLrrPdlGrklse 85 ++ k ++ tpar+g+ rags+++t+++l+++++haaA+dAv+s+++e++l++ +l + vks+++d+++y++rPdlGr+l+e 23726_FusoPortal_Gene_521 67 EFLKYKRKTPARLGISRAGSRYTTHTMLRLRADHAAAQDAVLSSVNEDFLKAnNL----FIVKSRCEDKDQYITRPDLGRRLDE 146 677889**********************************************888....99*********************** PP HHHHHHHHHS-SS-SEEEEEE-TT-HHHHHTTHHHHHHHHHHHHHTTTS-B---EEEET--TTHHHHHHHHHT-SEEEEEEE-- CS EutC 86 esleklkekaeeeadvaivvaDGLsaeAveenaaelleallealkeaglsvapvvlveqgRValgdeigellgakvvvvliGER 169 es+++lkek+ +++ v++ vaDGLs++A+e+n++++l+all++lk+ g+sv+++++++ +RV l+d+++e+lga+v++vliGER 23726_FusoPortal_Gene_521 147 ESVKTLKEKCVQNPTVQVFVADGLSSTAIEANIEDCLPALLNGLKSYGISVGTPFFAKLARVGLADDVSEVLGAEVTCVLIGER 230 ************************************************************************************ PP --SS----EEEEEEES--TT--GGGSEEEEEESTTSB-HHHHHHHHHHHHHHHHHHT--GGGS. CS EutC 170 PGLssadslgvYltyapkvgltdaernciSnirpeGlsyeeAaaklaellkealklklsGveLk 233 PGL++a+s+++Y+ty+ vg +a+r+++Sni+ +G++++eA+a++a+++k++l++k+sG +Lk 23726_FusoPortal_Gene_521 231 PGLATAESMSAYITYKGYVGIPEAKRTVVSNIHVKGTPAAEAGAHIAHIIKKVLDAKASGQDLK 294 **************************************************************98 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (296 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 596 (0.035663); expected 334.2 (0.02) Passed bias filter: 436 (0.026089); expected 334.2 (0.02) Passed Vit filter: 31 (0.00185495); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.25u 0.23s 00:00:00.48 Elapsed: 00:00:00.31 # Mc/sec: 2775.75 // [ok]