# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_560.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_560 [L=265] Description: # 619220 # 620014 # -1 # ID=1_560;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.253 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-30 106.4 0.9 3.4e-30 105.2 0.2 1.8 2 ABC_tran ABC transporter 9.8e-08 31.6 8.8 5.4e-07 29.2 7.5 2.3 1 SMC_N RecF/RecN/SMC N terminal domain 4.8e-07 29.8 5.2 8.5e-05 22.4 0.8 2.5 3 AAA_21 AAA domain, putative AbiEii toxin, Type IV TA s 1.1e-05 25.2 14.2 1.6e-05 24.7 14.2 1.2 1 AAA_15 AAA ATPase domain 9e-05 22.0 0.1 0.0002 20.9 0.1 1.5 1 AAA_29 P-loop containing region of AAA domain 0.00018 21.4 0.5 0.00051 19.9 0.0 1.9 2 RsgA_GTPase RsgA GTPase 0.00029 21.3 0.4 0.0059 17.0 0.0 2.3 2 AAA_18 AAA domain 0.00059 20.0 0.2 0.0021 18.2 0.2 1.9 1 AAA_22 AAA domain 0.00077 19.1 0.4 0.028 14.0 0.1 2.2 2 AAA_24 AAA domain 0.0016 18.3 0.2 0.013 15.4 0.0 2.2 2 AAA_5 AAA domain (dynein-related subfamily) 0.0019 18.1 2.3 0.022 14.7 0.1 2.4 2 AAA_14 AAA domain 0.0026 18.1 2.1 0.031 14.6 2.1 2.1 1 AAA ATPase family associated with various cellular 0.0048 17.2 0.0 0.0086 16.4 0.0 1.4 1 AAA_16 AAA ATPase domain ------ inclusion threshold ------ 0.013 15.6 0.2 0.39 10.9 0.2 2.5 1 SbcCD_C Putative exonuclease SbcCD, C subunit 0.013 15.3 0.1 0.031 14.1 0.1 1.6 1 NACHT NACHT domain 0.015 15.6 0.1 0.11 12.8 0.0 2.2 2 RNA_helicase RNA helicase 0.026 14.2 0.1 0.096 12.3 0.1 1.8 1 AAA_30 AAA domain 0.041 13.5 0.1 0.25 10.9 0.0 2.0 2 IstB_IS21 IstB-like ATP binding protein 0.051 12.3 1.0 6.1 5.4 0.0 2.7 2 ABC_ATPase Predicted ATPase of the ABC class 0.064 13.2 0.0 0.094 12.7 0.0 1.4 1 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain 0.064 12.2 0.2 0.19 10.6 0.0 1.8 2 NB-ARC NB-ARC domain 0.073 12.2 0.1 0.19 10.9 0.0 1.7 2 Zeta_toxin Zeta toxin 0.09 12.0 0.0 0.19 11.0 0.0 1.6 1 Mg_chelatase Magnesium chelatase, subunit ChlI 0.11 12.5 0.1 0.16 12.0 0.1 1.6 1 AAA_33 AAA domain 0.17 12.3 10.9 0.78 10.1 10.9 2.2 1 AAA_23 AAA domain 0.19 11.3 0.1 0.22 11.0 0.1 1.3 1 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-bind 0.21 11.5 5.2 0.22 11.5 0.6 2.7 3 DUF87 Domain of unknown function DUF87 Domain annotation for each model (and alignments): >> ABC_tran ABC transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 105.2 0.2 5.5e-33 3.4e-30 2 136 .. 18 163 .. 17 164 .. 0.93 2 ? -0.7 0.0 2.9 1.8e+03 52 52 .. 209 209 .. 168 258 .. 0.44 Alignments for each domain: == domain 1 score: 105.2 bits; conditional E-value: 5.5e-33 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTEEGGG.B-HHHCCHCEEEE-SS.--S-TTSBHHHH.... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxx.... RF ABC_tran 2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe.pqlfpeltvren.... 79 kn+s+++k+ge + i+G+nG+GKStL+kllagl ++eG+i++ g d+k+ ++l + rk +g+++q+ ++ ++tv ++ 23726_FusoPortal_Gene_560 18 KNLSFSIKKGEYLCIIGKNGSGKSTLAKLLAGLIFQQEGSIKISGYDTKNqKDLLEIRKLVGIIFQNpENQIINTTVFDEvvfg 101 8**********************************************999899**************75566667788889*** PP .........HHHTCHHHHHHCSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS .........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ABC_tran 80 .........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136 + +e +e+ l+++ l e kd+ ++LSgG+kqr+a+a +l+ ++l++DE+ 23726_FusoPortal_Gene_560 102 lenlatpreNIKEIAENSLKSVALLEYKDRLT----YQLSGGEKQRLAIASVLAMGTEILIFDEAI 163 **99988877777799**********999998....****************************96 PP == domain 2 score: -0.7 bits; conditional E-value: 2.9 B CS x RF ABC_tran 52 q 52 + 23726_FusoPortal_Gene_560 209 N 209 1 PP >> SMC_N RecF/RecN/SMC N terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.2 7.5 8.8e-10 5.4e-07 24 212 .. 27 208 .. 4 216 .. 0.68 Alignments for each domain: == domain 1 score: 29.2 bits; conditional E-value: 8.8e-10 SSEEEEEESTTSSHHHHHHHHHHHHTT.TSSS--HHHHCCCT--.SSSSSTTCCEEEECEEECCEE..-B----BEEEEEEEET CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF SMC_N 24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk..lkiekeevsisrrvkr 105 + +i+G+NGSGKs l + ++ + + +++ + ++ k+++ + v i+f+n++++ ++ +ev+ + 23726_FusoPortal_Gene_560 27 GEYLCIIGKNGSGKSTLAKLLAGLIFQ-QEGSIKISGYDT---KNQKDLLEIRKLVGIIFQNPENQiiNTTVFDEVVFGLENLA 106 24679************9988555544.443666555553...32333344456799********9332222233333333333 PP TT-EEEEETTEEE-HHHHHHHHHCTT--TTCS-HHHHHHHHHHHHHHHHTCS--SEEEECSTTTTS-HHHHHHHHHHHHHHCCT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 106 kgeseykingkevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn 189 + + i++ ++ + lle ++ +LSgGek+ +a+a ++A+ + + ++De + LD k+v +l+ke +++ 23726_FusoPortal_Gene_560 107 TPR--ENIKEIAENSLKSVALLEYKDRLTYQLSGGEKQRLAIASVLAMG----TEILIFDEAISMLDPVGKKEVLKLMKELNSQ 184 322..33444444444445678888888889**************9985....679***********************99988 PP .SEEEEE-SSHHHHTT-SCEEEEE CS .xxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 190 .aQfivislreemlekadklvgvt 212 +i i+++++ + +a++++ ++ 23726_FusoPortal_Gene_560 185 gKTIIHITHNRNDILEASEVMVLS 208 3556669**999998888877655 PP >> AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.4 0.8 1.4e-07 8.5e-05 3 56 .. 31 88 .. 30 97 .. 0.77 2 ! 8.9 0.0 0.0018 1.1 235 299 .. 134 196 .. 103 200 .. 0.82 3 ? -2.4 0.1 4.8 3e+03 190 207 .. 220 237 .. 203 261 .. 0.47 Alignments for each domain: == domain 1 score: 22.4 bits; conditional E-value: 1.4e-07 AAA_21 3 vliGpNgsGKSnLLdaldllarl....drdvegltdelsggggirkipslldlydpei 56 ++iG+NgsGKS+L ++l +l + ++ + +t ++ + +irk + ++ + +++ 23726_FusoPortal_Gene_560 31 CIIGKNGSGKSTLAKLLAGLIFQqegsIKISGYDTKNQKDLLEIRKLVGIIFQNPENQ 88 69*****************976577777777777777777777777777777666665 PP == domain 2 score: 8.9 bits; conditional E-value: 0.0018 AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS.p 299 ++lS G k+ ++++l+ +l++DE + L+P +++l+l+kel++ g +i TH+ + 23726_FusoPortal_Gene_560 134 YQLSGGEKQR-LAIASVLAMGT--EILIFDEAISMLDPVGKKEVLKLMKELNSQGKTIIHITHNrN 196 899*******.56666665555..9*************999*******999999*********944 PP == domain 3 score: -2.4 bits; conditional E-value: 4.8 AAA_21 190 rslklveielsdlgegee 207 + + ++e+++ ++++++ 23726_FusoPortal_Gene_560 220 KIFEDDEFNPFLIKIKNI 237 222222222222222222 PP >> AAA_15 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 14.2 2.5e-08 1.6e-05 9 191 .. 12 257 .. 8 264 .. 0.74 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 2.5e-08 AAA_15 9 kNFRslkdteidldee.ltvliGkNnsGKSsilealdlf.lnnkekkn.................................... 54 +N + +k+ + +++ + ++iGkN+sGKS+++++l + +++ + + 23726_FusoPortal_Gene_560 12 QNNKVFKNLSFSIKKGeYLCIIGKNGSGKSTLAKLLAGLiFQQEGSIKisgydtknqkdlleirklvgiifqnpenqiinttvf 95 67788888666776667*******************854144442333567777777777777766666666666666666666 PP AAA_15 55 .............enkvikiekedlekfeniseskeikIdvef..................liefeyledkkkilklksk..kk 105 +++ + i++++l+ +++ +++ ++++ + ++ ++ + +k 23726_FusoPortal_Gene_560 96 devvfglenlatpRENIKEIAENSLKSV--ALLEYK------DrltyqlsggekqrlaiasVLAMGTEILIFDEAISMLDpvGK 171 6666666555555434444444444444..344444......15555559999***9999988888888888888888889999 PP AAA_15 106 skeyestlkskgkkkadlllkkkekdlkklikdkklklkkneysdekisvekkkekkelekkkeeklekekaeikidkedlkkl 189 +++ ++ + + k+ + +++ ++d+ + +++ l++ + +y+d+ ++++++ e + + k ++ lek++ ++ ++ ++++l 23726_FusoPortal_Gene_560 172 KEVLKLMKELNSQGKTIIHITHNRNDILEASEVMVLSNREIKYQDNPYKIFEDDEFNPFLIKIKNILEKNNIRVDDKNINMEDL 255 99999999999999*****************************************99999998888887777777667777776 PP AAA_15 190 ik 191 + 23726_FusoPortal_Gene_560 256 VR 257 66 PP >> AAA_29 P-loop containing region of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.9 0.1 3.2e-07 0.0002 8 38 .. 13 43 .. 8 51 .. 0.87 Alignments for each domain: == domain 1 score: 20.9 bits; conditional E-value: 3.2e-07 AAA_29 8 NWgtfdghtieldlkgvtlltGpsGsGKSTl 38 N f++ ++++++ + ++G++GsGKSTl 23726_FusoPortal_Gene_560 13 NNKVFKNLSFSIKKGEYLCIIGKNGSGKSTL 43 6678999999**96669*************8 PP >> RsgA_GTPase RsgA GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.0 8.2e-07 0.00051 77 150 .. 4 75 .. 1 87 [. 0.82 2 ? -0.8 0.1 1.9 1.2e+03 48 81 .. 188 223 .. 162 243 .. 0.61 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 8.2e-07 SEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEET CS RsgA_GTPase 77 yevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellela 150 +e l s ++++ +++l+ +k+ + +++G+ G GKStL + l++ ++ g+++ +G T + lle+ 23726_FusoPortal_Gene_560 4 VENLSFSYQNNKVFKNLSFSIKKgEYLCIIGKNGSGKSTLAKLLAGLIFQQEGSIKI---SGYDTKNQKDLLEIR 75 667788999999*********999**********************99888888876...467777766666665 PP == domain 2 score: -0.8 bits; conditional E-value: 1.9 EEEEEEE-GGG--HHH..HHHHHHHHHHHTTSEEEE CS RsgA_GTPase 48 epvivlnKiDlleeee..eleelkeelealgyevll 81 ++i n+ D+le +e l++ + ++++ y+++ 23726_FusoPortal_Gene_560 188 IIHITHNRNDILEASEvmVLSNREIKYQDNPYKIFE 223 345666777777777655566666666666666655 PP >> AAA_18 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 9.6e-06 0.0059 2 67 .. 31 105 .. 30 145 .. 0.77 2 ? 2.4 0.1 0.31 1.9e+02 9 76 .. 169 249 .. 167 261 .. 0.51 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 9.6e-06 AAA_18 2 lltGtpGvGKttlareLskrlgf............gvnlrdvakenglllevdpealdeskrldedkldklldaleen 67 ++ G+ G+GK+tla+ L+ + f n +d++ + l+ +++ +e++++++ + d+++ +le+ 23726_FusoPortal_Gene_560 31 CIIGKNGSGKSTLAKLLAGLI-FqqegsikisgydTKNQKDLLEIRKLVGIIFQN--PENQIINTTVFDEVVFGLENL 105 799**************6553.344554566777777777777777777777777..888888887777777777665 PP == domain 2 score: 2.4 bits; conditional E-value: 0.31 AAA_18 9 vGKttlareLskrlgf................gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegen 76 vGK ++ + +++ ++ v+ ++++ + ++p+ ++ + ++l k+ ++le+n+ + +++n 23726_FusoPortal_Gene_560 169 VGKKEVLKLMKEL-NSqgktiihithnrndilEASEVMVLSNREIKYQDNPY-KIFEDDEFNPFLIKIKNILEKNNI-RVDDKN 249 6888888777665.45655566554433333322222333333333333333.333444445555666666666665.444555 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.2 0.2 3.5e-06 0.0021 7 115 .. 29 181 .. 24 199 .. 0.65 Alignments for each domain: == domain 1 score: 18.2 bits; conditional E-value: 3.5e-06 AAA_22 7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsstsskdllrellralglelka................... 70 l+++G G+GK+tl++ l+ +++ ++ + ++ ++++++ ++++ + +++++ + 23726_FusoPortal_Gene_560 29 YLCIIGKNGSGKSTLAKLLAGLIFQQE-----GSIKIsGYDTKNQKDLLEIRKLVGIIFQNPENQiinttvfdevvfglenlat 107 689****************99975443.....3333347777777777777777777777777777777777777777777777 PP AAA_22 71 ......................erlsseellealeqalrarav............ielliiDEaqh.lr...seealeeLrsl 115 +l+ +l+ + +e+li DEa l+ ++e+l+ ++l 23726_FusoPortal_Gene_560 108 prenikeiaenslksvalleykD---------RLTYQLSGGEKqrlaiasvlamgTEILIFDEAISmLDpvgKKEVLKLMKEL 181 77777777776665555444431.........222222222223334444557778999999998856566546666665555 PP >> AAA_24 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.0 0.1 4.6e-05 0.028 5 39 .. 30 61 .. 26 100 .. 0.68 2 ? 3.4 0.1 0.083 52 108 136 .. 171 199 .. 169 221 .. 0.84 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 4.6e-05 AAA_24 5 iliyGpsgiGKTtlakelgpkplfidtekGlksld 39 ++i+G++g+GK+tlak l l+++ e++ ++ 23726_FusoPortal_Gene_560 30 LCIIGKNGSGKSTLAKLL--AGLIFQQEGSI-KIS 61 79**************99..77777777766.344 PP == domain 2 score: 3.4 bits; conditional E-value: 0.083 AAA_24 108 aeefrrllkklqelrknvifiahektrkd 136 ++e+ +l+k l++ +k++i i h + + 23726_FusoPortal_Gene_560 171 KKEVLKLMKELNSQGKTIIHITHNRNDIL 199 789********************987655 PP >> AAA_5 AAA domain (dynein-related subfamily) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.4 0.0 2.1e-05 0.013 2 29 .. 30 58 .. 29 80 .. 0.78 2 ? 0.3 0.0 0.94 5.8e+02 11 59 .. 170 219 .. 169 257 .. 0.69 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 2.1e-05 EEEE--SSSSHHHHHHHGGGGB.S--EEE CS AAA_5 2 vlLvGppGtgKselaerlaaal.nrevey 29 ++++G+ G+gKs+la+ la ++ ++e + 23726_FusoPortal_Gene_560 30 LCIIGKNGSGKSTLAKLLAGLIfQQEGSI 58 79*******************99666544 PP == domain 2 score: 0.3 bits; conditional E-value: 0.94 SHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--............--- CS AAA_5 11 gKselaerlaaalnreveyvqltrdtteedlkgrreik...ngttslvdspl 59 gK e+ + ++++ + +++ +t +++d++ e++ n++ +++d+p+ 23726_FusoPortal_Gene_560 170 GKKEVLKLMKELNSQGKTIIHITH--NRNDILEASEVMvlsNREIKYQDNPY 219 777777777777777777777766..56677777776666666666666655 PP >> AAA_14 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.1 3.6e-05 0.022 3 73 .. 28 98 .. 26 106 .. 0.76 2 ? 3.0 0.1 0.15 92 22 98 .. 115 192 .. 102 223 .. 0.54 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 3.6e-05 AAA_14 3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla.dpekllelileklkeekktylflDEi 73 + l+i G +GK+tl+k l+ l+ ++e + i+ d +++k + +kl +i+++ +++ + ++DE+ 23726_FusoPortal_Gene_560 28 EYLCIIGKNGSGKSTLAKLLA-GLIFQQEGSIKISGYDTKNQKDLlEIRKLVGIIFQNPENQIINTTVFDEV 98 67899***********98888.55569999999998777776644155588888888744445566899998 PP == domain 2 score: 3.0 bits; conditional E-value: 0.15 AAA_14 22 likellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev......pewekalkslvdegknldvivt 98 +++++l +s+ ++ +d +++l+ ek +i + l + ++++l++DE+ + +e+ k +k+l +g + + +t 23726_FusoPortal_Gene_560 115 IAENSL---KSVALLEYKDRLTYQLSGGEKQRLAIASVL-AMGTEILIFDEAISMldpvgkKEVLKLMKELNSQG-KTIIHIT 192 444444...555555555554444443322222333323.24789999999877777777755555555555555.3333333 PP >> AAA ATPase family associated with various cellular activities (AAA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.6 2.1 5e-05 0.031 2 115 .. 31 198 .. 30 213 .. 0.71 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 5e-05 EEESSTTSSHHHHHHHHHHHH..THEEEEEETTTCCSS.............................................. CS AAA 2 llyGppGtGKTllakavakel..gvefleisgsellsk.............................................. 37 +++G G GK++lak +a + + ++isg + ++ 23726_FusoPortal_Gene_560 31 CIIGKNGSGKSTLAKLLAGLIfqQEGSIKISGYDTKNQkdlleirklvgiifqnpenqiinttvfdevvfglenlatprenike 114 899*****************8433446888888888556777788888888888888888888888888888888888888888 PP ...................STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHCHHHSSCSTHHHHHHHHHHHHHHHHTTTSSST CS AAA 38 ...................yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkesk 102 y+ + +k r ++++ ++ + il++DE+ ++ ++ l+ +++++++ + 23726_FusoPortal_Gene_560 115 iaenslksvalleykdrltYQLSGGEKQRLAIASVLAMG-TEILIFDEAISMLDPV----------GKKEVLKLMKELNSQGK- 186 888888888888888888877777777777776665565.7888888888887666..........34444444444444322. PP EEEEEEESSGGGS CS AAA 103 vivigatnrpdkl 115 ++i +t++ +++ 23726_FusoPortal_Gene_560 187 -TIIHITHNRNDI 198 .455555554444 PP >> AAA_16 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.0 1.4e-05 0.0086 24 86 .. 27 82 .. 14 151 .. 0.70 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 1.4e-05 AAA_16 24 pelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesa....ipysalaqalareellrqll 86 +e++ ++G G+GKs+l++ l+ + +++g ++g ++++++ + +l+ + 23726_FusoPortal_Gene_560 27 GEYLCIIGKNGSGKSTLAKLLAGLIFQQEGSIkISGYDTKNQKDlleiR------------KLVGIIF 82 48999*****************999999755559999999977643321............3333333 PP >> SbcCD_C Putative exonuclease SbcCD, C subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.2 0.00064 0.39 28 89 .. 131 179 .. 123 180 .. 0.75 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.00064 SbcCD_C 28 rssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 r + +lSGGekq la + + +++++DEA s lD+ +++l+l++ 23726_FusoPortal_Gene_560 131 RLTYQLSGGEKQRLAIASV-------LAM------GTEILIFDEAISMLDPVGKKEVLKLMK 179 5577899999976544333.......333......346999999999999999999999886 PP >> NACHT NACHT domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.1 5e-05 0.031 2 23 .. 29 50 .. 28 58 .. 0.85 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 5e-05 NACHT 2 lvilqGeaGsGKTtLlqklala 23 ++++ G++GsGK+tL++ la + 23726_FusoPortal_Gene_560 29 YLCIIGKNGSGKSTLAKLLAGL 50 689*************988865 PP >> RNA_helicase RNA helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 0.00018 0.11 1 30 [. 30 59 .. 30 97 .. 0.83 2 ? 0.1 0.0 1.6 9.7e+02 49 106 .. 153 209 .. 147 210 .. 0.77 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 0.00018 RNA_helicase 1 iwlyGpsgeGKStlakeLakallkklklkk 30 +++ G++g GKStlak La + ++ +++k 23726_FusoPortal_Gene_560 30 LCIIGKNGSGKSTLAKLLAGLIFQQEGSIK 59 5899*************9988876664444 PP == domain 2 score: 0.1 bits; conditional E-value: 1.6 RNA_helicase 49 gqevvvidDfgqvkdee.npsdlaelirlvsstpyplnmasleekgtlftSkvvivtsN 106 g e++++d+ ++ d +++ l+ + +l s + +++ + + +++ v+v sN 23726_FusoPortal_Gene_560 153 GTEILIFDEAISMLDPVgKKEVLKLMKELNSQGKTIIHITHNRND--ILEASEVMVLSN 209 568889999999988886777888888888888888888777754..677777777777 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.1 0.00016 0.096 19 120 .. 28 189 .. 20 195 .. 0.62 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 0.00016 AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa..............................eelgieast 72 + ++ G G+GK+t+ k l+ ++ +++g++ + k k+L e+l ++ ++ 23726_FusoPortal_Gene_560 28 EYLCIIGKNGSGKSTLAKLLAGLIFQQEGSIKISGYDTKNQKDLLeirklvgiifqnpenqiinttvfdevvfglENLATPREN 111 47899*****************99999878888877777777766355444444444433333333333333333233333333 PP AAA_30 73 iakllkrlk.................................grarlepg.tllivDEa.gmv...dtkqlaallkaaekagak 118 i k + l+ g ++li DEa +m+ + k++ +l+k+++++g + 23726_FusoPortal_Gene_560 112 I-------KeiaenslksvalleykdrltyqlsggekqrlaiAS-VLAMGtEILIFDEAiSMLdpvGKKEVLKLMKELNSQGKT 187 3.......033344456777777777788888888888887632.334444888888875666555667777777777776666 PP AAA_30 119 vi 120 +i 23726_FusoPortal_Gene_560 188 II 189 65 PP >> IstB_IS21 IstB-like ATP binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 0.00041 0.25 40 69 .. 19 49 .. 5 73 .. 0.82 2 ? 0.1 0.1 0.87 5.4e+02 107 145 .. 152 189 .. 123 198 .. 0.70 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.00041 IstB_IS21 40 tlsf.iekkenivllGpsGvGKshlaialgv 69 +lsf i+k e ++++G G GKs la l+ 23726_FusoPortal_Gene_560 19 NLSFsIKKGEYLCIIGKNGSGKSTLAKLLAG 49 555558999*****************98875 PP == domain 2 score: 0.1 bits; conditional E-value: 0.87 IstB_IS21 107 lkvdllilDdlgllpldqaeaellfeviekryerrsiii 145 + +++li D+ ++ ld ++++++++++ + +ii 23726_FusoPortal_Gene_560 152 MGTEILIFDE-AISMLDPVGKKEVLKLMKELNSQGKTII 189 3348999998.5788999999999999988776666655 PP >> ABC_ATPase Predicted ATPase of the ABC class # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 0.0 0.0098 6.1 241 265 .. 23 48 .. 6 54 .. 0.83 2 ? 4.4 0.3 0.02 12 320 358 .. 133 171 .. 127 249 .. 0.67 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.0098 EE-SS.EEEEEE-TTSSHHHHHHHHH CS ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAle 265 i+kG I+G + GKsTL + l+ 23726_FusoPortal_Gene_560 23 SIKKGeYLCIIGKNGSGKSTLAKLLA 48 699998899************98775 PP == domain 2 score: 4.4 bits; conditional E-value: 0.02 ESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH-- CS ABC_ATPase 320 tedASGStsqAanimealeagakllLiDEDtsAtNlmir 358 t + SG q +i+ l +g+++l++DE s + + 23726_FusoPortal_Gene_560 133 TYQLSGGEKQRLAIASVLAMGTEILIFDEAISMLDPVGK 171 566788899999999999999999999998876555544 PP >> CbiA CobQ/CobB/MinD/ParA nucleotide binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 0.00015 0.094 6 55 .. 34 180 .. 30 258 .. 0.72 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 0.00015 SSTTSSHHHHHHHHHHHHHH..TT--EEEEEEEESSCCCCHHTTEB-HHHH................................. CS xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF CbiA 6 tkGGvGKTtlaanLaralar..rglrVllvDaDpqannlaileglendiep................................. 54 +k G+GK+tla La ++ + + ++ +D+ +q +l+i + + + ++ 23726_FusoPortal_Gene_560 34 GKNGSGKSTLAKLLAGLIFQqeGSIKISGYDTKNQKDLLEIRKLVGIIFQNpenqiinttvfdevvfglenlatprenikeiae 117 799************9988744589***************84443333333566666788888888988888888887777777 PP ..............................................................C CS ..............................................................x RF CbiA 55 ..............................................................d 55 23726_FusoPortal_Gene_560 118 nslksvalleykdrltyqlsggekqrlaiasvlamgteilifdeaismldpvgkkevlklmkE 180 777777777777777777777777777777777777777777766666666655555554442 PP >> NB-ARC NB-ARC domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.0 0.00031 0.19 5 37 .. 13 45 .. 10 64 .. 0.89 2 ? -1.3 0.0 1.3 7.9e+02 158 190 .. 157 189 .. 140 241 .. 0.66 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00031 HHHHHHHHHTCTSSSEEEEEEESTTSSHHHHHH CS NB-ARC 5 vekviekLleledelgivalvGmgGvGKttlak 37 +kv ++L+ + ++ + + + G+ G+GK+tlak 23726_FusoPortal_Gene_560 13 NNKVFKNLSFSIKKGEYLCIIGKNGSGKSTLAK 45 6899999999889999***************97 PP == domain 2 score: -1.3 bits; conditional E-value: 1.3 --HHHHHHHHHHCHTCHH.....GGSHHHHHHHH CS NB-ARC 158 Lekdeawellenkvfeke.lsedpdleevakeiv 190 L dea +l v++ke l+ ++l+ ++k i+ 23726_FusoPortal_Gene_560 157 LIFDEAISMLDP-VGKKEvLKLMKELNSQGKTII 189 444444444433.333333444455555555544 PP >> Zeta_toxin Zeta toxin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 0.0003 0.19 19 55 .. 30 66 .. 13 76 .. 0.83 2 ? -3.7 0.0 8.7 5.4e+03 154 176 .. 107 129 .. 106 133 .. 0.76 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.0003 Zeta_toxin 19 illgGqpGAGKselaellkdelerqgnvvrldpDdlR 55 + + G G+GKs+la+ll+ + +q++ +++++ d + 23726_FusoPortal_Gene_560 30 LCIIGKNGSGKSTLAKLLAGLIFQQEGSIKISGYDTK 66 567799***********************99986666 PP == domain 2 score: -3.7 bits; conditional E-value: 8.7 Zeta_toxin 154 vpkeehdeafeglresvealeee 176 +p e+++e+ e+ +sv+ le + 23726_FusoPortal_Gene_560 107 TPRENIKEIAENSLKSVALLEYK 129 57888888999999888887765 PP >> Mg_chelatase Magnesium chelatase, subunit ChlI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 0.00031 0.19 21 49 .. 26 54 .. 11 98 .. 0.79 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.00031 Mg_chelatase 21 GgHnlllvGppGsGKtmlakrlpsllppl 49 g l ++G GsGK+ lak l++l+ + 23726_FusoPortal_Gene_560 26 KGEYLCIIGKNGSGKSTLAKLLAGLIFQQ 54 5567899****************998654 PP >> AAA_33 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.1 0.00026 0.16 4 20 .. 32 48 .. 30 195 .. 0.83 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 0.00026 AAA_33 4 lvGlpGsGKstlaerll 20 ++G +GsGKstla+ l+ 23726_FusoPortal_Gene_560 32 IIGKNGSGKSTLAKLLA 48 79***********9884 PP >> AAA_23 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 10.9 0.0013 0.78 6 59 .. 13 66 .. 8 254 .. 0.57 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.0013 AAA_23 6 nfrsfrdqeidFskg.ltlItGpNGaGKTTildAiklaLygetprlsrksgrgfe 59 n + f++ ++ +kg +I G+NG+GK+T+ + + + + + + g + + 23726_FusoPortal_Gene_560 13 NNKVFKNLSFSIKKGeYLCIIGKNGSGKSTLAKLLAGLIFQQEGSIKIS-GYDTK 66 5555677777776651459**************9999999875443332.22222 PP >> ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.1 0.00036 0.22 8 35 .. 21 48 .. 17 189 .. 0.91 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.00036 CS-EBTT-EEEEEESTTSSHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ATP-synt_ab 8 lfpivqGqrtlipgafgvGktvisqsls 35 f+i +G+ ++i+g++g Gk+++++ l+ 23726_FusoPortal_Gene_560 21 SFSIKKGEYLCIIGKNGSGKSTLAKLLA 48 58999******************97765 PP >> DUF87 Domain of unknown function DUF87 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.6 0.00035 0.22 26 48 .. 30 52 .. 27 61 .. 0.82 2 ? 0.9 0.1 0.6 3.7e+02 97 170 .. 72 152 .. 51 212 .. 0.50 3 ? 0.4 0.1 0.88 5.4e+02 85 105 .. 228 258 .. 143 262 .. 0.62 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 0.00035 DUF87 26 lAilgsTGsGKSntvavLleell 48 l+i+g+ GsGKS+++++L + 23726_FusoPortal_Gene_560 30 LCIIGKNGSGKSTLAKLLAGLIF 52 689**************987776 PP == domain 2 score: 0.9 bits; conditional E-value: 0.6 DUF87 97 ldpeelldlleeddkpaaavqrsvleealdqaka....keekeklssdepveklleelk.........kekeelrklknqaiar 167 l+++ l+ +++ ++++ + + v++e++ +++ +e+++++ +++ ++ ++ +k++ +++ 23726_FusoPortal_Gene_560 72 LEIRKLVGIIFQ-NPENQIINTTVFDEVVFGLENlatpRENIKEIAENSLKSV-----AlleykdrltYQLSGGEKQRLAIASV 149 555555555555.4444444666666666655533333333333332222222.....23333344432222333333333333 PP DUF87 168 lld 170 l + 23726_FusoPortal_Gene_560 150 LAM 152 333 PP == domain 3 score: 0.4 bits; conditional E-value: 0.88 DUF87 85 a..........kdkelkinpwsldpeelldl 105 ++++++++ +++++e+l++l 23726_FusoPortal_Gene_560 228 NpflikiknilEKNNIRVDDKNINMEDLVRL 258 1333333334455566666666666666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (265 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1022 (0.0611537); expected 334.2 (0.02) Passed bias filter: 578 (0.0345859); expected 334.2 (0.02) Passed Vit filter: 92 (0.00550503); expected 16.7 (0.001) Passed Fwd filter: 27 (0.00161561); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 27 [number of targets reported over threshold] # CPU time: 0.32u 0.27s 00:00:00.59 Elapsed: 00:00:00.35 # Mc/sec: 2201.04 // [ok]