# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_593.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_593 [L=102] Description: # 656913 # 657218 # 1 # ID=1_593;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.242 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-12 45.7 0.9 1.5e-11 45.0 0.2 1.7 2 DUF4065 Protein of unknown function (DUF4065) Domain annotation for each model (and alignments): >> DUF4065 Protein of unknown function (DUF4065) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.0 0.52 8.6e+03 88 103 .. 8 23 .. 3 26 .. 0.58 2 ! 45.0 0.2 9.2e-16 1.5e-11 1 88 [. 28 89 .. 28 101 .. 0.70 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 0.52 DUF4065 88 idkvikkykdlsaseL 103 ++++k+y s+ + 23726_FusoPortal_Gene_593 8 AEYIFKEYYRISGEYI 23 4556666666665555 PP == domain 2 score: 45.0 bits; conditional E-value: 9.2e-16 DUF4065 1 LqKllYfadflhlkrtgkpitglkyiawkyGPVvpevydeikelgskpieekeeeksdeklekkekkeveeleddkeaelseeeke 86 LqKllYf+++++l+ +kp+++++++ wkyGPV++ev + + + i +++++d ++ e k 23726_FusoPortal_Gene_593 28 LQKLLYFSQRESLAILNKPMFSENFEGWKYGPVSREVRTYFTPK--DGI---TTNTED---------------------IKSENKY 87 9********************************99999966422..222...222222.....................3333333 PP DUF4065 87 vi 88 +i 23726_FusoPortal_Gene_593 88 II 89 33 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (102 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 452 (0.0270464); expected 334.2 (0.02) Passed bias filter: 306 (0.0183102); expected 334.2 (0.02) Passed Vit filter: 12 (0.000718047); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.21u 0.23s 00:00:00.44 Elapsed: 00:00:00.32 # Mc/sec: 926.62 // [ok]