# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_594.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_594 [L=106] Description: # 657411 # 657728 # 1 # ID=1_594;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.220 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-06 27.4 0.2 3.4e-06 27.3 0.2 1.1 1 PemK_toxin PemK-like, MazF-like toxin of type II toxin-antit Domain annotation for each model (and alignments): >> PemK_toxin PemK-like, MazF-like toxin of type II toxin-antitoxin system # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.3 0.2 2e-10 3.4e-06 14 95 .. 9 91 .. 1 101 [. 0.70 Alignments for each domain: == domain 1 score: 27.3 bits; conditional E-value: 2e-10 -TTS--SEEEEEE-S-SHHHHHSEEEEEEEES.SSSSS-S.TTEEEE-HH.HTSSS...-EEEEEEEEEEEETTTE.E.EEEEE-- CS PemK_toxin 14 rgseqgkrRpvvVvsndafnekntvivvplts.kdkdklklpfhvelese.ildlnglddswvkldqirtvdkarl.r.kkigkls 95 + +k Rpv+++s+ + n +++p+++ ++k + + ++++++++ +++l+ ++ s+v++++ + +++a + r + ig l+ 23726_FusoPortal_Gene_594 9 TNTTKIKSRPVLILSSTRNN---DYTILPISTiTNKVNMDIDYDIKIDPVsYPKLKLKQVSYVRTHKRTFIHQASIdRsNIIGDLK 91 3455699*********9665...689999996333334444999999998888886444899999888888877765324555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (106 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 350 (0.020943); expected 334.2 (0.02) Passed bias filter: 203 (0.012147); expected 334.2 (0.02) Passed Vit filter: 16 (0.000957396); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.22u 0.24s 00:00:00.46 Elapsed: 00:00:00.32 # Mc/sec: 962.95 // [ok]