# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_602.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_602 [L=71] Description: # 667308 # 667520 # 1 # ID=1_602;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.221 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0054 16.1 0.0 0.0061 16.0 0.0 1.1 1 DUF3512 Domain of unknown function (DUF3512) ------ inclusion threshold ------ 0.041 14.3 0.2 0.074 13.4 0.2 1.5 1 SNase Staphylococcal nuclease homologue Domain annotation for each model (and alignments): >> DUF3512 Domain of unknown function (DUF3512) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.0 7.3e-07 0.0061 128 169 .. 4 46 .. 1 53 [. 0.87 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 7.3e-07 DUF3512 128 dStFanlske.esdLvystYGdessvqyaeSiqeFvkdsgsya 169 d F n s+e e d +++ YG e++ + ++eF k+++++ 23726_FusoPortal_Gene_602 4 DAKFINFSEEhELDYILKKYGKETNKENRDLLKEFGKKAKEFL 46 8899999987689**************************7765 PP >> SNase Staphylococcal nuclease homologue # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.2 8.9e-06 0.074 12 42 .. 27 58 .. 7 64 .. 0.80 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 8.9e-06 SSBTTT.TTSTTHHHHHHHHHHHHHHCSSEEE CS SNase 12 takpkk.tvqpfgkeAkeflkklvlqkkvvvl 42 t+k ++ +++fgk+Akefl k +l+++ ++ 23726_FusoPortal_Gene_602 27 TNKENRdLLKEFGKKAKEFLGKTMLEHDEFYK 58 443333589************99998776665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (71 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 801 (0.0479296); expected 334.2 (0.02) Passed bias filter: 420 (0.0251316); expected 334.2 (0.02) Passed Vit filter: 36 (0.00215414); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.22u 0.25s 00:00:00.47 Elapsed: 00:00:00.31 # Mc/sec: 665.80 // [ok]