# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_608.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_608 [L=101] Description: # 673186 # 673488 # 1 # ID=1_608;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-19 70.1 8.9 2.3e-19 69.9 8.9 1.0 1 Na_Ala_symp Sodium:alanine symporter family Domain annotation for each model (and alignments): >> Na_Ala_symp Sodium:alanine symporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.9 8.9 1.4e-23 2.3e-19 146 215 .. 2 75 .. 1 77 [. 0.92 Alignments for each domain: == domain 1 score: 69.9 bits; conditional E-value: 1.4e-23 Na_Ala_symp 146 lvilggikriakvaevvvPvmailYilvalvviilniekvpevlalifksAFgleavagGilg....aairlGv 215 +v+lgg+k++a++++++vP+m i+Y++v+l+vi+lni++vp+v+++if++AF+++avagG+ g a+++G+ 23726_FusoPortal_Gene_608 2 VVVLGGLKKLANISTLLVPIMSIFYVVVGLLVILLNIQQVPSVIKEIFTQAFSMKAVAGGTGGyiiaRAMQYGI 75 79***********************************************************9966656666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (101 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1039 (0.0621709); expected 334.2 (0.02) Passed bias filter: 437 (0.0261489); expected 334.2 (0.02) Passed Vit filter: 31 (0.00185495); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.22u 0.24s 00:00:00.46 Elapsed: 00:00:00.32 # Mc/sec: 917.53 // [ok]