# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_617.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_617 [L=859] Description: # 688754 # 691330 # -1 # ID=1_617;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.298 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-57 193.7 0.1 2.5e-53 180.6 0.0 2.8 2 AAA_2 AAA domain (Cdc48 subfamily) 2.1e-28 99.3 1.3 1.2e-14 54.7 0.0 3.7 3 AAA ATPase family associated with various cellul 1.8e-25 88.7 0.1 1.8e-25 88.7 0.1 3.0 2 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 3.5e-20 72.3 0.0 1.6e-13 50.7 0.0 3.0 2 AAA_5 AAA domain (dynein-related subfamily) 1.5e-16 60.1 0.0 1.1e-08 34.9 0.0 3.1 2 Clp_N Clp amino terminal domain, pathogenicity isl 6.6e-11 42.3 0.0 8.8e-05 22.4 0.0 3.6 2 AAA_14 AAA domain 2.7e-10 40.1 0.1 1.3e-05 24.9 0.0 3.3 2 Sigma54_activat Sigma-54 interaction domain 4.1e-09 36.9 0.1 0.00042 20.6 0.0 3.6 4 AAA_16 AAA ATPase domain 1e-08 35.5 0.9 0.0024 18.0 0.0 4.7 3 AAA_22 AAA domain 7.3e-07 29.0 0.1 0.0013 18.4 0.0 2.9 2 IstB_IS21 IstB-like ATP binding protein 4e-06 26.3 0.0 0.42 9.9 0.0 3.4 2 Mg_chelatase Magnesium chelatase, subunit ChlI 8.1e-06 25.9 0.0 0.0059 16.7 0.0 2.9 2 AAA_33 AAA domain 1.1e-05 25.1 0.7 0.063 12.9 0.0 3.9 3 AAA_24 AAA domain 2.6e-05 24.1 0.0 0.14 12.0 0.0 2.5 2 NACHT NACHT domain 3.3e-05 24.3 0.0 0.52 10.7 0.0 3.3 2 AAA_18 AAA domain 4.9e-05 23.6 0.0 0.48 10.7 0.0 2.9 2 RNA_helicase RNA helicase 8.4e-05 21.8 1.0 0.72 9.0 0.0 4.0 3 RuvB_N Holliday junction DNA helicase ruvB N-termin 0.00014 22.0 0.0 0.47 10.6 0.0 2.9 2 Roc Ras of Complex, Roc, domain of DAPkinase 0.00051 20.1 0.0 0.003 17.6 0.0 2.2 2 Torsin Torsin 0.0007 19.5 2.7 0.036 14.0 0.0 3.9 3 ResIII Type III restriction enzyme, res subunit 0.00092 19.0 0.0 0.63 9.8 0.0 3.2 2 AAA_3 ATPase family associated with various cellul 0.0036 16.7 0.1 0.11 11.9 0.0 3.0 3 PhoH PhoH-like protein 0.0047 16.7 5.9 0.8 9.5 0.0 3.9 4 RsgA_GTPase RsgA GTPase 0.0062 16.4 0.0 6.6 6.7 0.0 2.8 2 TsaE Threonylcarbamoyl adenosine biosynthesis pro 0.0066 15.6 0.0 0.89 8.7 0.0 2.9 2 Zeta_toxin Zeta toxin ------ inclusion threshold ------ 0.011 16.0 0.3 0.58 10.4 0.5 3.5 2 AAA_19 AAA domain 0.012 15.8 0.0 11 6.1 0.0 3.3 4 AAA_28 AAA domain 0.015 14.7 0.0 6.2 6.2 0.0 2.7 2 AAA_25 AAA domain 0.23 11.4 2.5 2.1 8.3 0.0 3.6 3 CbiA CobQ/CobB/MinD/ParA nucleotide binding domai 0.42 11.0 40.9 0.46 10.9 0.1 4.9 3 AAA_23 AAA domain 0.43 11.0 9.0 1.4 9.3 0.0 4.2 3 ABC_tran ABC transporter Domain annotation for each model (and alignments): >> AAA_2 AAA domain (Cdc48 subfamily) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.2 0.1 0.0011 0.57 7 87 .. 202 286 .. 196 322 .. 0.71 2 ! 180.6 0.0 4.6e-56 2.5e-53 1 171 [] 598 760 .. 598 760 .. 0.98 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.0011 EEE--TTSSHHHHHHHHHHHTT-..........-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS...EEEEETGGG-- CS AAA_2 7 lllgptgvGktelakalaellfv......kkekkliradaselleeeevehlvsrligappgyvgaeegG...ivllDEidKia 81 +l+g+ gvGkt + + la+ + k+kk+ +d+ +l + + + ++ + v ee+ i+++DEi i 23726_FusoPortal_Gene_617 202 ILIGEPGVGKTAIVEGLAQRILNgdvpesLKNKKIFSLDMGALVAGAKYKGEFEERMKGVLKEV--EESNgniILFIDEIHTIV 283 578999******99999986644688998889999**********6666655544443333333..3322367999****9888 PP ------ CS AAA_2 82 pkessg 87 +g 23726_FusoPortal_Gene_617 284 G---AG 286 7...33 PP == domain 2 score: 180.6 bits; conditional E-value: 4.6e-56 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EE CS AAA_2 1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............iv 72 rp++s+++lgptgvGkt+lak+la lf ++e++++r+d+se++ + +v+rligappgyvg+eegG ++ 23726_FusoPortal_Gene_617 598 RPMGSFIFLGPTGVGKTYLAKTLAYNLF-DSEDNVVRIDMSEYMD----KFSVTRLIGAPPGYVGYEEGGqlteairtkpysVI 676 699*************************.****************....*********************************** PP EEETGGG-------------HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHH CS AAA_2 73 llDEidKiapkessgadvSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeel 156 l+DEi+K++p +V+++LLq+l++g+ltd qgr vd+kn+l+Imt+++gs+ i ++ + +e+++e+v +el 23726_FusoPortal_Gene_617 677 LFDEIEKAHP-----------DVFNVLLQVLDDGRLTDGQGRIVDFKNTLIIMTSNIGSHFILEDPN----LSEDTREKVADEL 745 **********...........*******************************************666....59999******** PP HTT--HHHHTT--EE CS AAA_2 157 kkglipEllgRlpei 171 k+ ++pE+l+R++ei 23726_FusoPortal_Gene_617 746 KARFKPEFLNRIDEI 760 *************86 PP >> AAA ATPase family associated with various cellular activities (AAA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.7 0.0 2.3e-17 1.2e-14 2 126 .. 202 334 .. 201 339 .. 0.81 2 ? 0.8 0.3 1 5.6e+02 24 96 .. 354 414 .. 346 446 .. 0.65 3 ! 39.8 0.0 9.1e-13 4.9e-10 2 111 .. 604 722 .. 603 741 .. 0.84 Alignments for each domain: == domain 1 score: 54.7 bits; conditional E-value: 2.3e-17 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCC..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHCHH CS AAA 2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaks 73 +l+G pG+GKT++++ +a+ + + +++++++ l+ ky ge e+++++++ke++e+++ ilfiDEi+ ++++ 23726_FusoPortal_Gene_617 202 ILIGEPGVGKTAIVEGLAQRIlngdvpeslkNKKIFSLDMGALVagAKYKGEFEERMKGVLKEVEESNGNIILFIDEIHTIVGA 285 699*****************767666666656889*******997778*****************99977************** PP HSSCSTHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESS.....GGGSCHHHHSTSSEE CS AAA 74 rsgseseeeervvnqLlteldgvkkkeskvivigatnr.....pdkldpallrgRfdr 126 + e + ++ n L ++l + + vigat+ + + dpal +Rf+ 23726_FusoPortal_Gene_617 286 G---KGEGSLDAGNMLKPMLARGEL-----RVIGATTIdeyrkYIEKDPALE-RRFQT 334 *...667777788888888887766.....7999998765433334455666.57765 PP == domain 2 score: 0.8 bits; conditional E-value: 1 HEEEEEETTTCCSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHCHHH...SSCSTHHHHHHHHHHHHHHHHT CS AAA 24 vefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 +f + g ++++ + e++ + ++++ k + i +iDE+ a+++++ +eld++ 23726_FusoPortal_Gene_617 354 DKFETYHGVRITDTGIVEAATLSQRYISDRKLPD-KAIDLIDEAAAMIRTEidsM--------------PEELDQL 414 5566666777777777777777777777755544.78999********9994322..............3333333 PP == domain 3 score: 39.8 bits; conditional E-value: 9.1e-13 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCCSS............STTHHHHHHHHHHHHHHHTSTS.EEEEEETGGG CS AAA 2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgesekkirelfkeakekakp.silfiDEida 69 ++ Gp G+GKT+lak +a +l + ++++i++se ++k yvg e +l +++++k p s++++DEi++ 23726_FusoPortal_Gene_617 604 IFLGPTGVGKTYLAKTLAYNLfdsEDNVVRIDMSEYMDKfsvtrligappgYVGYEEGG--QLTEAIRTK--PySVILFDEIEK 683 789*****************8665699**********99***********988866653..344444554..559********* PP HCHHHSSCSTHHHHHHHHHHHHHHHHTTTS........SSTEEEEEEESS CS AAA 70 laksrsgseseeeervvnqLlteldgvkkk........eskvivigatnr 111 +++ n+Ll++ld+ + +++++i+++n 23726_FusoPortal_Gene_617 684 AHPDV-----------FNVLLQVLDDGRLTdgqgrivdFKNTLIIMTSNI 722 *9999...........**********999999999999555899999986 PP >> ClpB_D2-small C-terminal, D2-small domain, of ClpB protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.2 9.7 5.2e+03 2 33 .. 464 488 .. 463 503 .. 0.51 2 ! 88.7 0.1 3.2e-28 1.8e-25 2 79 .. 767 844 .. 766 846 .. 0.95 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 9.7 SHHHHHHHHHH..HHHHHHHHHHTTT-EEEE-HH CS ClpB_D2-small 2 tkeelkkIvdl..qlkklekrlaergvelevtde 33 +ke++ kI ++ ++++++ + +++ 23726_FusoPortal_Gene_617 464 EKEDISKIKNIkrEIENVKLEM---------EKA 488 5566666655544444444333.........333 PP == domain 2 score: 88.7 bits; conditional E-value: 3.2e-28 SHHHHHHHHHHHHHHHHHHHHTTT-EEEE-HHHHHHHHHHHSBTTTBTTTHHHHHHHHTHHHHHHHHHTTSS-TTSEE CS ClpB_D2-small 2 tkeelkkIvdlqlkklekrlaergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtv 79 + ++k+Iv+l lk+le++l+ ++++le++d+++d+la+++ydp+yGARpLrr+iqreie+ la++il++e++e+++v 23726_FusoPortal_Gene_617 767 DLPAIKEIVKLSLKDLENKLKPKHITLEFSDKMVDYLANNAYDPHYGARPLRRYIQREIETSLAKKILANEIHEKSNV 844 66789********************************************************************99887 PP >> AAA_5 AAA domain (dynein-related subfamily) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 0.1 2.8e-06 0.0015 3 76 .. 202 281 .. 200 332 .. 0.81 2 ! 50.7 0.0 2.9e-16 1.6e-13 2 125 .. 603 728 .. 602 741 .. 0.82 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 2.8e-06 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHH...HH--B--.........--------..G-S.EEEEESGGG CS AAA_5 3 lLvGppGtgKselaerlaaal.nreveyvqltrdtteed...lkgrreikngttslvdsplvraar..ege.ilvlDEver 76 +L+G+pG+gK+ ++e la+++ n v + + ++++ + d l+ + ++k++ +++ +++l+ +++ +g il++DE+++ 23726_FusoPortal_Gene_617 202 ILIGEPGVGKTAIVEGLAQRIlNGDVPESLKNKKIFSLDmgaLVAGAKYKGEFEERMKGVLK-EVEesNGNiILFIDEIHT 281 8********************97777777777766554412267777776777777777777.666564442678999986 PP == domain 2 score: 50.7 bits; conditional E-value: 2.9e-16 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--..........--------..G-SEEEEESGGG--H CS AAA_5 2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreikngttsl.vdsplvraar..egeilvlDEveraes 79 ++ +Gp+G+gK+ la+ la l +++v+ + +++++ + ++ + +g + + + l++a+r +++++DE+e+a++ 23726_FusoPortal_Gene_617 603 FIFLGPTGVGKTYLAKTLAYNLfdsEDNVVRIDMSEYMDKFSVTRLIGAPPGYVGYeEGGQLTEAIRtkPYSVILFDEIEKAHP 686 799***********************************9999999999776655550557899999976679************ PP HHHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS--.... CS AAA_5 80 evlnsLlslleerrllleeggelvkaknddllerfrviatanpld...r 125 +v+n+Ll++l++ rl + g+ v++kn + +i+t+n + 23726_FusoPortal_Gene_617 687 DVFNVLLQVLDDGRLT-DGQGRIVDFKN------TLIIMTSNIGShfiL 728 ****************.44455556666......899999998775544 PP >> Clp_N Clp amino terminal domain, pathogenicity island component # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.9 0.0 2.1e-11 1.1e-08 1 52 [. 18 69 .. 18 70 .. 0.96 2 ! 22.0 0.0 2.3e-07 0.00012 1 53 [] 97 144 .. 97 144 .. 0.87 Alignments for each domain: == domain 1 score: 34.9 bits; conditional E-value: 2.1e-11 HHHHHHHTTCSEE-HHHHHHHHHTSTTSHHHHHHHHTTSTHHHHHHHHHHHC CS Clp_N 1 AqelAkslghqyistEHLLLALleeddGlaarlLkkaGvdldalrkaiekll 52 A +++k + +q i +E L L+Ll++++Gl+ r+++k+G++l+ + +++ek++ 23726_FusoPortal_Gene_617 18 AVDISKGNMQQSIKPEALALGLLMQNNGLIPRVIEKMGLNLQYIISELEKEM 69 6789999*******************************************98 PP == domain 2 score: 22.0 bits; conditional E-value: 2.3e-07 HHHHHHHTTCSEE-HHHHHHHHHTSTTSHHHHHHHHTTSTHHHHHHHHHHHCC CS Clp_N 1 AqelAkslghqyistEHLLLALleeddGlaarlLkkaGvdldalrkaiekllg 53 A++++ ++ ++++s+EH+++A++ee +++k +G++l++ + + +++g 23726_FusoPortal_Gene_617 97 AEKIMNEMEDSFLSVEHIFKAMIEEM-----PIFKILGISLEKYMEVLMNIRG 144 899********************965.....5788888888888888888886 PP >> AAA_14 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 0.0 2.6e-05 0.014 7 78 .. 203 284 .. 200 334 .. 0.76 2 ! 22.4 0.0 1.6e-07 8.8e-05 6 90 .. 604 699 .. 601 709 .. 0.73 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 2.6e-05 AAA_14 7 itGaRrvGKTtllkqlikell.......vkkesilyinldderd.kkla.dpekllelileklke.ekktylflDEiqevpe 78 + G vGKT +++ l+++ l k+++i+ +++ +k++ ++e+ ++ +l++++e +++ +lf+DEi+ + + 23726_FusoPortal_Gene_617 203 LIGEPGVGKTAIVEGLAQRILngdvpesLKNKKIFSLDMGALVAgAKYKgEFEERMKGVLKEVEEsNGNIILFIDEIHTIVG 284 667778***********9999***99877778888777766544422333566677888887544489999*******9843 PP == domain 2 score: 22.4 bits; conditional E-value: 1.6e-07 AAA_14 6 vitGaRrvGKTtllkqlikellvkkesilyinldderd......kkladpe.............kllelileklkeekktylfl 70 + G+ vGKT+l+k+l+++l+ ++++++ i++ + d +l e+i+ k +++++ 23726_FusoPortal_Gene_617 604 IFLGPTGVGKTYLAKTLAYNLFDSEDNVVRIDMSEYMDkfsvtrL-----IgappgyvgyeeggQLTEAIRTK----PYSVILF 678 567999**************99999********998884444330.....13333333332233444555554....4467*** PP AAA_14 71 DEiqev.pewekalkslvdeg 90 DEi ++ p+++++l +++d+g 23726_FusoPortal_Gene_617 679 DEIEKAhPDVFNVLLQVLDDG 699 ***987689****99999988 PP >> Sigma54_activat Sigma-54 interaction domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.3 0.1 0.00037 0.2 1 105 [. 179 282 .. 179 317 .. 0.67 2 ! 24.9 0.0 2.3e-08 1.3e-05 24 134 .. 602 712 .. 573 737 .. 0.80 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00037 ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSS......S CS Sigma54_activat 1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGa......F 78 +ig++++++++++ i++ +k+d ++ Ge G+GK+ + + + ++ +++pe+l + ++F Ga + 23726_FusoPortal_Gene_617 179 IIGRDSEIRRAIQIISRRTKND--PILIGEPGVGKTAIVEGLAQRIL----------NGDVPESLKNKKIFSLDMGAlvagakY 250 6788888888888888765544..4667*********9999887554..........356677777777777777662111123 PP TTTSS-BE.HHHHHTTTS....EEEEETGGGS CS Sigma54_activat 79 tGAekekk.GlfekadgG....tlfLDeigel 105 G +e++ G +++ +++ +lf+Dei+++ 23726_FusoPortal_Gene_617 251 KGEFEERMkGVLKEVEESngniILFIDEIHTI 282 33333333365544433222235788888876 PP == domain 2 score: 24.9 bits; conditional E-value: 2.3e-08 -EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS CS Sigma54_activat 24 svlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigel 105 s + +G +G+GK++la+++ + +e ++v+++++++ ++ ++L G G + G e+ + ++++ +++++Dei++ 23726_FusoPortal_Gene_617 602 SFIFLGPTGVGKTYLAKTLAYNLFDSEDNVVRIDMSEYMDKFSVTRLIGAPPG-YVGYEEGGQltEAIRTKPYSVILFDEIEKA 684 56789**************999999999**********************998.888777654445667777899********* PP -HHHHHHHHHHHHHSEEESBTSSSEEE-- CS Sigma54_activat 106 plelQekLlrvlqegevervGsskeikvd 134 +++ + Ll+vl++g+++ G+ + ++++ 23726_FusoPortal_Gene_617 685 HPDVFNVLLQVLDDGRLTD-GQGRIVDFK 712 **************99876.555554444 PP >> AAA_16 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.6 0.0 7.8e-07 0.00042 2 49 .. 179 223 .. 178 231 .. 0.86 2 ? -1.4 0.0 4.8 2.6e+03 116 145 .. 255 280 .. 229 298 .. 0.70 3 ! 11.3 0.0 0.0006 0.32 22 51 .. 597 627 .. 571 685 .. 0.77 4 ? -1.7 0.0 5.8 3.1e+03 135 160 .. 671 697 .. 662 709 .. 0.72 Alignments for each domain: == domain 1 score: 20.6 bits; conditional E-value: 7.8e-07 AAA_16 2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellrale 49 +GR+ e+++ ++++r +++p +l+Ge+GvGK+++v+ l++++ 23726_FusoPortal_Gene_617 179 IIGRDSEIRRAIQIISRRTKNDP---ILIGEPGVGKTAIVEGLAQRIL 223 58******888888888888887...99************99998775 PP == domain 2 score: -1.4 bits; conditional E-value: 4.8 AAA_16 116 asrllellkrllallsrderplvlvlDdlq 145 ++r+ +lk+ + ++l++D+++ 23726_FusoPortal_Gene_617 255 EERMKGVLKEVE----ESNGNIILFIDEIH 280 344444444444....323349*****999 PP == domain 3 score: 11.3 bits; conditional E-value: 0.0006 AAA_16 22 grp.elvllsGesGvGKsslvrellralekd 51 +rp ++ ++ G+ GvGK+ l+++l+ l ++ 23726_FusoPortal_Gene_617 597 NRPmGSFIFLGPTGVGKTYLAKTLAYNLFDS 627 34478999**************999766655 PP == domain 4 score: -1.7 bits; conditional E-value: 5.8 AAA_16 135 rp.lvlvlDdlqwadeaslqllaaLlr 160 +p v+++D++++a ++ ++l + l+ 23726_FusoPortal_Gene_617 671 KPySVILFDEIEKAHPDVFNVLLQVLD 697 344899******999998888544444 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.0 0.0 0.0013 0.72 9 30 .. 202 223 .. 195 317 .. 0.73 2 ? 1.3 0.1 0.66 3.5e+02 37 110 .. 326 412 .. 309 426 .. 0.64 3 ! 18.0 0.0 4.5e-06 0.0024 7 118 .. 602 698 .. 598 722 .. 0.80 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.0013 AAA_22 9 vvtGesGtGKTtllrrlleqld 30 +++Ge+G+GKT ++ l+++ 23726_FusoPortal_Gene_617 202 ILIGEPGVGKTAIVEGLAQRIL 223 79***********999988764 PP == domain 2 score: 1.3 bits; conditional E-value: 0.66 AAA_22 37 e...erpevvfvtlpsstsskdllrellralglelka..erlsseellealeqalrarav..ielliiDEaqhlr..s....ee 107 +r ++++v+ p+ + ++lr l +++ + e ++ ++++++r+ +++ +iDEa ++ + +e 23726_FusoPortal_Gene_617 326 PaleRRFQTILVNEPNVDDTISILRGLKDKFETYHGVriTDTGIVEAATLSQRYISDRKLpdKAIDLIDEAAAMIrtEidsmPE 409 144578888999999999888888888888885444454444444445555666666666888888999999976552523433 PP AAA_22 108 ale 110 l 23726_FusoPortal_Gene_617 410 ELD 412 333 PP == domain 3 score: 18.0 bits; conditional E-value: 4.5e-06 AAA_22 7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrara 90 + + G++G+GKT+l+++l+++l ++ vv++++++ + +++ + r +g + + e +l++a+r++ 23726_FusoPortal_Gene_617 602 SFIFLGPTGVGKTYLAKTLAYNLFD------SEDNVVRIDMSEYM--DKF--SVTRLIGAPPGY---VGYEEGGQLTEAIRTKP 672 66788****************9954......4999*********9..444..668888888888...66667789999999999 PP AAA_22 91 vielliiDEaqhlrseealeeLrsllnl 118 ++++ DE+++ ++++++ L + l++ 23726_FusoPortal_Gene_617 673 Y-SVILFDEIEKA-HPDVFNVLLQVLDD 698 9.9*******999.99999999888886 PP >> IstB_IS21 IstB-like ATP binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.2 0.0 0.0067 3.6 47 73 .. 198 224 .. 184 273 .. 0.77 2 ! 18.4 0.0 2.3e-06 0.0013 49 92 .. 602 645 .. 559 652 .. 0.81 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0067 IstB_IS21 47 kenivllGpsGvGKshlaialgveavr 73 k+ +l+G +GvGK+ + l+++ + 23726_FusoPortal_Gene_617 198 KNDPILIGEPGVGKTAIVEGLAQRILN 224 556699*************99998765 PP == domain 2 score: 18.4 bits; conditional E-value: 2.3e-06 IstB_IS21 49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkr 92 ++++lGp+GvGK++la +l+++ ++ +v+ + +++ + + ++ 23726_FusoPortal_Gene_617 602 SFIFLGPTGVGKTYLAKTLAYNLFDSEDNVVRIDMSEYMDKFSV 645 689*******************9999988888777777766665 PP >> Mg_chelatase Magnesium chelatase, subunit ChlI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.9 0.0 0.00078 0.42 9 64 .. 184 240 .. 176 258 .. 0.79 2 ! 8.4 0.0 0.0021 1.2 25 49 .. 603 627 .. 600 770 .. 0.77 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00078 Mg_chelatase 9 eeakraleiaa.aGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasva 64 +e +ra++i + + +l+G pG GKt + + l++ + + + e+l+ +ki s+ 23726_FusoPortal_Gene_617 184 SEIRRAIQIISrRTKNDPILIGEPGVGKTAIVEGLAQRILNGDVPESLKNKKIFSLD 240 4567888865514566789****************9988899999999999999886 PP == domain 2 score: 8.4 bits; conditional E-value: 0.0021 Mg_chelatase 25 lllvGppGsGKtmlakrlpsllppl 49 ++++Gp G GKt lak l+ l + 23726_FusoPortal_Gene_617 603 FIFLGPTGVGKTYLAKTLAYNLFDS 627 7899999999999999998766554 PP >> AAA_33 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 0.0 0.022 12 3 22 .. 202 221 .. 202 272 .. 0.93 2 ! 16.7 0.0 1.1e-05 0.0059 3 90 .. 604 743 .. 603 765 .. 0.76 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.022 AAA_33 3 llvGlpGsGKstlaerllkk 22 +l+G pG+GK+ +e+l+++ 23726_FusoPortal_Gene_617 202 ILIGEPGVGKTAIVEGLAQR 221 689**************975 PP == domain 2 score: 16.7 bits; conditional E-value: 1.1e-05 AAA_33 3 llvGlpGsGKstlaerllkklg.....avllssdt.............................................lrrr 36 ++ G+ G+GK++la+ l+ +l +v+++ + ++ 23726_FusoPortal_Gene_617 604 IFLGPTGVGKTYLAKTLAYNLFdsednVVRIDMSEymdkfsvtrligappgyvgyeeggqlteairtkpysvilfdeiekAHPD 687 899**************9998888956666666667777777777777777777777777777777777777766655444444 PP AAA_33 37 lfg..tdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrerarflk 90 +f+ ++ ++ ++t+ r+ ++ n l+ + g ++il +nls+++r+++ 23726_FusoPortal_Gene_617 688 VFNvlLQVLDDGRLTDGQGRIVDFKNTLIIMTSNIGSHFILEDPNLSEDTREKVAD 743 44444333334478889999999*9999*9999******************98765 PP >> AAA_24 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.5 0.1 0.0052 2.8 6 41 .. 202 237 .. 197 339 .. 0.78 2 ? -0.9 0.0 1.9 1e+03 71 92 .. 390 411 .. 389 419 .. 0.87 3 ! 12.9 0.0 0.00012 0.063 7 84 .. 605 691 .. 602 713 .. 0.67 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.0052 AAA_24 6 liyGpsgiGKTtlakelgpkplfidtekGlksldad 41 +++G++g+GKT ++ l +++l d+ ++lk+ + 23726_FusoPortal_Gene_617 202 ILIGEPGVGKTAIVEGLAQRILNGDVPESLKNKKIF 237 799************998888877777777666544 PP == domain 2 score: -0.9 bits; conditional E-value: 1.9 AAA_24 71 iDtideleelclaevirqneka 92 iD ide+ +++ e++ ++e 23726_FusoPortal_Gene_617 390 IDLIDEAAAMIRTEIDSMPEEL 411 9****************99875 PP == domain 3 score: 12.9 bits; conditional E-value: 0.00012 AAA_24 7 iyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel...........aaeladyktlviDtidelee 79 Gp g+GKT+lak+l ++d e+ + ++d ++ d s++ ++ + a ++y+++ +D i+++ 23726_FusoPortal_Gene_617 605 FLGPTGVGKTYLAKTL--AYNLFDSEDNVVRIDMSEYMDKFSVTRLIGAPPGYvgyeeggqlteAIRTKPYSVILFDEIEKAHP 686 57**************..444556666555555555544443333333332225666667777666777899999999999877 PP AAA_24 80 lclae 84 +++ 23726_FusoPortal_Gene_617 687 DVFNV 691 76665 PP >> NACHT NACHT domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.0 0.0 0.00025 0.14 4 33 .. 202 231 .. 201 250 .. 0.81 2 ! 9.3 0.0 0.0017 0.92 4 29 .. 604 629 .. 602 640 .. 0.84 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 0.00025 NACHT 4 ilqGeaGsGKTtLlqklalawaegklpqga 33 il Ge+G+GKT+ +++la+ + g+ p+ 23726_FusoPortal_Gene_617 202 ILIGEPGVGKTAIVEGLAQRILNGDVPESL 231 789*****************9999988754 PP == domain 2 score: 9.3 bits; conditional E-value: 0.0017 NACHT 4 ilqGeaGsGKTtLlqklalawaegkl 29 i G+ G+GKT+L++ la + ++++ 23726_FusoPortal_Gene_617 604 IFLGPTGVGKTYLAKTLAYNLFDSED 629 678***************99877665 PP >> AAA_18 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.7 0.0 0.00096 0.52 2 68 .. 202 269 .. 202 286 .. 0.68 2 ! 9.5 0.0 0.0024 1.3 3 29 .. 605 632 .. 604 649 .. 0.70 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00096 AAA_18 2 lltGtpGvGKttlareLskrlgfgvnlrdvakenglllevdpe.aldeskrldedkldklldaleens 68 +l G pGvGKt + + L++r +g++ ++ ++ +l+ + a ++k + e+++ +l+++ee++ 23726_FusoPortal_Gene_617 202 ILIGEPGVGKTAIVEGLAQRILNGDVPESLKNKKIFSLDMGALvAGAKYKGEFEERMKGVLKEVEESN 269 689****************9634555555555555555555555445666666666666777777765 PP == domain 2 score: 9.5 bits; conditional E-value: 0.0024 AAA_18 3 ltGtpGvGKttlareLskrl.gfgvnlr 29 G++GvGKt la+ L+ l + +n+ 23726_FusoPortal_Gene_617 605 FLGPTGVGKTYLAKTLAYNLfDSEDNVV 632 67**************988733333333 PP >> RNA_helicase RNA helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.5 0.0 0.0022 1.2 3 24 .. 203 224 .. 202 252 .. 0.79 2 ! 10.7 0.0 0.00089 0.48 2 25 .. 604 627 .. 603 647 .. 0.78 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.0022 RNA_helicase 3 lyGpsgeGKStlakeLakallk 24 l G++g+GK+ +++ La+++l+ 23726_FusoPortal_Gene_617 203 LIGEPGVGKTAIVEGLAQRILN 224 78*****************994 PP == domain 2 score: 10.7 bits; conditional E-value: 0.00089 RNA_helicase 2 wlyGpsgeGKStlakeLakallkk 25 ++ Gp+g+GK++lak+La +l ++ 23726_FusoPortal_Gene_617 604 IFLGPTGVGKTYLAKTLAYNLFDS 627 689*************99988743 PP >> RuvB_N Holliday junction DNA helicase ruvB N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 0.4 0.011 6.1 49 112 .. 198 281 .. 174 286 .. 0.51 2 ! 9.0 0.0 0.0013 0.72 29 74 .. 579 624 .. 550 631 .. 0.71 3 ? -1.3 0.0 1.8 9.9e+02 100 130 .. 671 701 .. 662 706 .. 0.87 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.011 RuvB_N 49 aldhvllyGpPGlGkttlakiiakel.....gvnlkit...s...gPvl.......ekagdlaalltnleekd...vlfideih 111 + d +l+G PG+Gkt++ + +a+ + +lk s g ++ e + + ++l+++ee++ +lfideih 23726_FusoPortal_Gene_617 198 KNDP-ILIGEPGVGKTAIVEGLAQRIlngdvPESLKNKkifSldmGALVagakykgEFEERMKGVLKEVEESNgniILFIDEIH 280 4444.4568888888887765555431111122222210001111222211111111223456666666664444467777777 PP RuvB_N 112 r 112 23726_FusoPortal_Gene_617 281 T 281 5 PP == domain 2 score: 9.0 bits; conditional E-value: 0.0013 RuvB_N 29 qekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakel 74 ++v +++ ++ k ++++ ++ Gp G+Gkt lak +a +l 23726_FusoPortal_Gene_617 579 VKSVADTMLRSVAGLKDPNRPMGSFIFLGPTGVGKTYLAKTLAYNL 624 34455556666777888999999*****************999876 PP == domain 3 score: -1.3 bits; conditional E-value: 1.8 RuvB_N 100 eekdvlfideihrlsraveevlysamedfrl 130 ++ v++ dei + ++ v +vl + ++d rl 23726_FusoPortal_Gene_617 671 KPYSVILFDEIEKAHPDVFNVLLQVLDDGRL 701 56789999****************9999776 PP >> Roc Ras of Complex, Roc, domain of DAPkinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.1 0.0 0.0052 2.8 3 22 .. 202 221 .. 201 238 .. 0.86 2 ! 10.6 0.0 0.00088 0.47 3 36 .. 604 636 .. 602 647 .. 0.80 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.0052 EEESSTTSSHHHHHHCHCT- CS Roc 3 vlvGdsgvGKtsllkrfved 22 +l+G+ gvGKt +++ + ++ 23726_FusoPortal_Gene_617 202 ILIGEPGVGKTAIVEGLAQR 221 79***********9988765 PP == domain 2 score: 10.6 bits; conditional E-value: 0.00088 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEE CS Roc 3 vlvGdsgvGKtsllkrfvedkfsekekstigvdf 36 +++G +gvGKt l+k + + f+++ + + +d+ 23726_FusoPortal_Gene_617 604 IFLGPTGVGKTYLAKTLAYNLFDSED-NVVRIDM 636 79********************8664.4555555 PP >> Torsin Torsin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.0 5.4 2.9e+03 60 118 .. 205 263 .. 202 269 .. 0.73 2 ! 17.6 0.0 5.5e-06 0.003 14 80 .. 559 627 .. 551 647 .. 0.80 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 5.4 E-TTSSHHHHHHHHHHHHSTTGGGSTTEEEEEHHHHS--GGGHHHHHHHHHHHHHHHHH CS Torsin 60 GwtGtGknfvaeiiaenlyrdGlrsdyvkkfvatadfPkkkkveeykeelkeqiretlk 118 G +G Gk + e +a+ + + + + +k + d+ +yk e++e+++ lk 23726_FusoPortal_Gene_617 205 GEPGVGKTAIVEGLAQRILNGDVPESLKNKKIFSLDMGALVAGAKYKGEFEERMKGVLK 263 88999999999999999888777766666666677777777777777777777776665 PP == domain 2 score: 17.6 bits; conditional E-value: 5.5e-06 --HHHHHHHHHHH--S-HHHHHHHHHH.HHHHHT-SS-SS-E.EEEEEE-TTSSHHHHHHHHHHHHSTT CS Torsin 14 anleeLekdlekklfGqhlvkklvvks.vkaylenekpkkpL.vlsfhGwtGtGknfvaeiiaenlyrd 80 ++ +Le +++++ Gq + k+v + +++ ++p++p+ + f G tG Gk ++a+ +a nl+ + 23726_FusoPortal_Gene_617 559 EKMLHLEDHIKERVKGQDEAVKSVADTmLRSVAGLKDPNRPMgSFIFLGPTGVGKTYLAKTLAYNLFDS 627 567899***********9988888776246666777899998457899******************976 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 0.0 0.31 1.7e+02 14 50 .. 188 224 .. 151 271 .. 0.75 2 ? 0.2 0.0 1.1 5.9e+02 125 146 .. 263 284 .. 230 303 .. 0.81 3 ! 14.0 0.0 6.7e-05 0.036 6 56 .. 573 630 .. 568 635 .. 0.74 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 0.31 HHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S CS ResIII 14 nlleklkskrdkrglikmaTGtGKTlvaaklierllk 50 + ++ ++ + ++ ++ + G+GKT + l++r+l+ 23726_FusoPortal_Gene_617 188 RAIQIISRRTKNDPILIGEPGVGKTAIVEGLAQRILN 224 33444443566677888999*******9999988876 PP == domain 2 score: 0.2 bits; conditional E-value: 1.1 ..HHHTTT-SEEEEETGGGTTS CS ResIII 125 seellrdrfdviiiDEaHrlga 146 +e +++ + +++iDE H + + 23726_FusoPortal_Gene_617 263 KEVEESNGNIILFIDEIHTIVG 284 4555667777999*****8765 PP == domain 3 score: 14.0 bits; conditional E-value: 6.7e-05 HHHHHHHHHHT..............TTS..EEEEEESTTSTHHHHHHHHHHHH-S.....- CS ResIII 6 eyQeeaienlleklks........krdk..rglikmaTGtGKTlvaaklierllkkgkeek 56 + Q ea++++++++ +r +++ +TG+GKT++a l+++l+ +++ + 23726_FusoPortal_Gene_617 573 KGQDEAVKSVADTMLRsvaglkdpNR-PmgSFIFLGPTGVGKTYLAKTLAYNLFDSED--N 630 57888888888444444666654433.24688899*******************9855..4 PP >> AAA_3 ATPase family associated with various cellular activities (AAA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 0.0 0.042 22 3 23 .. 202 222 .. 201 229 .. 0.87 2 ! 9.8 0.0 0.0012 0.63 8 110 .. 609 720 .. 603 725 .. 0.57 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.042 AAA_3 3 llegvPGlaktllvkalakal 23 +l g PG++kt +v+ la+ + 23726_FusoPortal_Gene_617 202 ILIGEPGVGKTAIVEGLAQRI 222 57799************9875 PP == domain 2 score: 9.8 bits; conditional E-value: 0.0012 AAA_3 8 PGlaktllvkalakal...dlefkriqftpdl...lPsdilGt...evfeekekefefkkGpvfanllladeinrappktqsal 82 G++kt l+k+la l + ++ ri + + + ++G+ v e+ +++ +++l dei++a p + l 23726_FusoPortal_Gene_617 609 TGVGKTYLAKTLAYNLfdsEDNVVRIDMSEYMdkfSVTRLIGAppgYVGYEEGGQLTEAIRTKPYSVILFDEIEKAHPDVFNVL 692 5777777777777654322334556665543311123344554221122222233333333333579***************** PP AAA_3 83 leameerqvtvegethklpepflvlatq 110 l+++++ ++t ++ + ++ l++ t 23726_FusoPortal_Gene_617 693 LQVLDDGRLTDGQGRIVDFKNTLIIMTS 720 ********99765544333444444454 PP >> PhoH PhoH-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.7 0.0 0.51 2.7e+02 8 40 .. 185 219 .. 178 231 .. 0.71 2 ? -2.6 0.1 5.5 3e+03 100 175 .. 365 443 .. 341 455 .. 0.64 3 ! 11.9 0.0 0.0002 0.11 23 47 .. 604 628 .. 580 648 .. 0.88 Alignments for each domain: == domain 1 score: 0.7 bits; conditional E-value: 0.51 HHHHHHHHHH..H-SEEEEE--TTSSTTHHHHHHH CS PhoH 8 eQkeylealk..kndivfaiGpaGtGKtylavala 40 e ++++++++ +++ + iG+ G GKt + la 23726_FusoPortal_Gene_617 185 EIRRAIQIISrrTKNDPILIGEPGVGKTAIVEGLA 219 55666667766545556899********9866555 PP == domain 2 score: -2.6 bits; conditional E-value: 5.5 HHTTSEEEEEG..GGGTT--B-SEEE.EE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------------THHHHHHT CS PhoH 100 lekgkievapl..aymRGrTlndafv.ilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlpkgkksGlaealevl 175 +++g +e a l +y+ r l d+ + ++DEA + ++++ + l++ ++ + +++ + l+k++ ++ +e l+v+ 23726_FusoPortal_Gene_617 365 TDTGIVEAATLsqRYISDRKLPDKAIdLIDEAAAMIRTEIDSMPEELDQLTRKALQLEIEIKALEKETDDASKERLKVI 443 5555555554422466667776655547888888888888777777777777666666666666666566555555555 PP == domain 3 score: 11.9 bits; conditional E-value: 0.0002 EEE--TTSSTTHHHHHHHHHHHHTT CS PhoH 23 faiGpaGtGKtylavalavealkkk 47 + +Gp+G GKtyla +la +++ ++ 23726_FusoPortal_Gene_617 604 IFLGPTGVGKTYLAKTLAYNLFDSE 628 678***************9998763 PP >> RsgA_GTPase RsgA GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.5 0.0 0.012 6.7 92 122 .. 191 221 .. 122 237 .. 0.78 2 ? -1.4 2.7 3.3 1.8e+03 51 100 .. 461 515 .. 432 520 .. 0.54 3 ? -0.3 0.1 1.5 8e+02 60 101 .. 530 572 .. 516 576 .. 0.75 4 ! 9.5 0.0 0.0015 0.8 66 122 .. 566 623 .. 545 638 .. 0.74 Alignments for each domain: == domain 1 score: 6.5 bits; conditional E-value: 0.012 HHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS RsgA_GTPase 92 elkellkdktsvlvGqSGvGKStLinallpe 122 ++ ++ +++ +l+G+ GvGK+++++ l+++ 23726_FusoPortal_Gene_617 191 QIISRRTKNDPILIGEPGVGKTAIVEGLAQR 221 444455556679*************999875 PP == domain 2 score: -1.4 bits; conditional E-value: 3.3 EEEE-GGG--HHH...HHHHHHHHHH..HTTSEEEE--TTTHTTHHHHHHHCTTS CS RsgA_GTPase 51 ivlnKiDlleeee...eleelkeele..algyevllvsaktkegleelkellkdk 100 l K D+ + ++ e+e++k e+e + +y+++++s+ + +l++l+++l+++ 23726_FusoPortal_Gene_617 461 WELEKEDISKIKNikrEIENVKLEMEkaEREYDLTKLSELKYGKLATLEKELQEQ 515 3344444444444444444444443300445777777777777777777777765 PP == domain 3 score: -0.3 bits; conditional E-value: 1.5 -HHHHHHHHHHHHHHT.TSEEEE--TTTHTTHHHHHHHCTTSE CS RsgA_GTPase 60 eeeeeleelkeeleal.gyevllvsaktkegleelkellkdkt 101 ++e +++e+++ ++++ g++v ++ +++ke++ +l++++k+++ 23726_FusoPortal_Gene_617 530 KQEVTADEIADIVSRWtGIPVSKLTETKKEKMLHLEDHIKERV 572 3333667777776665479999**99**********9999876 PP == domain 4 score: 9.5 bits; conditional E-value: 0.0015 HHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS RsgA_GTPase 66 eelkeelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpe 122 +++ke+++ + +v v + ++++ lk+ + +++G++GvGK+ L ++l+ + 23726_FusoPortal_Gene_617 566 DHIKERVKGQDEAVKSVADTMLRSVAGLKDPNRPmGSFIFLGPTGVGKTYLAKTLAYN 623 566677777777777777777778888888777768899************9999865 PP >> TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 0.0 0.013 6.8 19 43 .. 198 222 .. 180 229 .. 0.75 2 ? 6.7 0.0 0.012 6.6 21 43 .. 596 624 .. 573 633 .. 0.66 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.013 -EEEEEEESTTSSHHHHHHHHHHHT CS TsaE 19 gdvilLeGdLGaGKTtlvrglakal 43 ++ +L G+ G+GKT++v gla+ + 23726_FusoPortal_Gene_617 198 KNDPILIGEPGVGKTAIVEGLAQRI 222 4446899**************9976 PP == domain 2 score: 6.7 bits; conditional E-value: 0.012 E......EEEEESTTSSHHHHHHHHHHHT CS TsaE 21 v......ilLeGdLGaGKTtlvrglakal 43 +++ G+ G+GKT l++ la +l 23726_FusoPortal_Gene_617 596 PnrpmgsFIFLGPTGVGKTYLAKTLAYNL 624 13444557888*************99876 PP >> Zeta_toxin Zeta toxin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 0.0 0.061 33 12 40 .. 194 222 .. 183 227 .. 0.73 2 ! 8.7 0.0 0.0016 0.89 21 54 .. 605 639 .. 584 645 .. 0.83 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 0.061 Zeta_toxin 12 sqerPklillgGqpGAGKselaellkdel 40 s++++ +l G pG GK+++ e l++++ 23726_FusoPortal_Gene_617 194 SRRTKNDPILIGEPGVGKTAIVEGLAQRI 222 555555567889**********9998876 PP == domain 2 score: 8.7 bits; conditional E-value: 0.0016 Zeta_toxin 21 lgGqpGAGKselaellkdele.rqgnvvrldpDdl 54 G +G GK++la+ l+ +l +++nvvr+d ++ 23726_FusoPortal_Gene_617 605 FLGPTGVGKTYLAKTLAYNLFdSEDNVVRIDMSEY 639 34889*************9998********98776 PP >> AAA_19 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 0.5 0.0011 0.58 10 78 .. 198 318 .. 187 548 .. 0.71 2 ? 0.8 0.0 0.98 5.3e+02 13 33 .. 603 623 .. 596 636 .. 0.78 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.0011 AAA_19 10 ekvllvtaGpGtGKTrvlkhivallvelggvkp.........eeillvaftgrAakelrerlaalgae..............at 70 ++ ++++ pG GKT ++++ + +++ v+ ++ ++ + e +er++++++e ++ 23726_FusoPortal_Gene_617 198 KNDPILIGEPGVGKTAIVEGLAQRILNGD-VPEslknkkifsLDMGALVAGAKYKGEFEERMKGVLKEveesngniilfideIH 280 4445799***********99988877655.433466666655444455555666677777777777777777888888855544 PP AAA_19 71 TiHrlal..............................l 78 Ti + + 23726_FusoPortal_Gene_617 281 TIVGAGKgegsldagnmlkpmlargelrvigattideY 318 44444334444444444444444444443333333330 PP == domain 2 score: 0.8 bits; conditional E-value: 0.98 AAA_19 13 llvtaGpGtGKTrvlkhival 33 ++ +++ G GKT++ k+ 23726_FusoPortal_Gene_617 603 FIFLGPTGVGKTYLAKTLAYN 623 6778999*****998876655 PP >> AAA_28 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 0.0 0.021 11 3 22 .. 202 221 .. 201 233 .. 0.83 2 ? -2.4 0.0 8.7 4.7e+03 77 95 .. 364 382 .. 355 417 .. 0.69 3 ? -2.5 0.1 9.4 5.1e+03 35 68 .. 393 427 .. 372 438 .. 0.56 4 ? 5.6 0.0 0.03 16 2 21 .. 603 622 .. 602 646 .. 0.77 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.021 AAA_28 3 vitGgestGKTtlleaLaar 22 +++G ++ GKT ++e La+r 23726_FusoPortal_Gene_617 202 ILIGEPGVGKTAIVEGLAQR 221 589***************98 PP == domain 2 score: -2.4 bits; conditional E-value: 8.7 AAA_28 77 fcDrglldtlaYarayege 95 + D+g+++ ++ +++y + 23726_FusoPortal_Gene_617 364 ITDTGIVEAATLSQRYISD 382 6666666666666666554 PP == domain 3 score: -2.5 bits; conditional E-value: 9.4 AAA_28 35 leeklakgedalpwv.edllafaervleeqleeea 68 ++e +a + ++++ e+l+++ ++ l+ ++e a 23726_FusoPortal_Gene_617 393 IDEAAAMIRTEIDSMpEELDQLTRKALQLEIEIKA 427 44444333333344445666666666666665554 PP == domain 4 score: 5.6 bits; conditional E-value: 0.03 AAA_28 2 ivitGgestGKTtlleaLaa 21 ++++G+ + GKT l++ La 23726_FusoPortal_Gene_617 603 FIFLGPTGVGKTYLAKTLAY 622 6899**************94 PP >> AAA_25 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 0.0 0.012 6.2 37 64 .. 202 228 .. 183 300 .. 0.79 2 ? 5.6 0.0 0.019 10 30 56 .. 598 623 .. 569 630 .. 0.74 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.012 AAA_25 37 llaGapgtGKttlaldlalavatGkpwl 64 +l+G pg+GKt+++ la ++ G+ ++ 23726_FusoPortal_Gene_617 202 ILIGEPGVGKTAIVEGLAQRILNGD-VP 228 899***************9999887.44 PP == domain 2 score: 5.6 bits; conditional E-value: 0.019 AAA_25 30 lpagelallaGapgtGKttlaldlala 56 +p+g++ ++ G++g+GKt la la+ 23726_FusoPortal_Gene_617 598 RPMGSF-IFLGPTGVGKTYLAKTLAYN 623 555555.567***********999875 PP >> CbiA CobQ/CobB/MinD/ParA nucleotide binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.1 7.9 4.2e+03 56 56 .. 132 132 .. 50 191 .. 0.57 2 ? 1.2 0.1 0.6 3.3e+02 9 21 .. 208 220 .. 202 485 .. 0.85 3 ? 8.3 0.0 0.0039 2.1 8 35 .. 609 636 .. 603 852 .. 0.70 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 7.9 C CS x RF CbiA 56 l 56 l 23726_FusoPortal_Gene_617 132 L 132 1 PP == domain 2 score: 1.2 bits; conditional E-value: 0.6 TSSHHHHHHHHHH CS xxxxxxxxxxxxx RF CbiA 9 GvGKTtlaanLar 21 GvGKT ++ +La+ 23726_FusoPortal_Gene_617 208 GVGKTAIVEGLAQ 220 8999999888887 PP == domain 3 score: 8.3 bits; conditional E-value: 0.0039 TTSSHHHHHHHHHHHHHHTT--EEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF CbiA 8 GGvGKTtlaanLaralarrglrVllvDa 35 GvGKT la +La l + + +V+ +D+ 23726_FusoPortal_Gene_617 609 TGVGKTYLAKTLAYNLFDSEDNVVRIDM 636 7***********************9997 PP >> AAA_23 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.7 0.2 3 1.6e+03 73 102 .. 71 105 .. 34 195 .. 0.49 2 ? -1.4 31.0 5 2.7e+03 24 196 .. 203 482 .. 201 577 .. 0.74 3 ? 10.9 0.1 0.00085 0.46 20 128 .. 601 748 .. 595 843 .. 0.53 Alignments for each domain: == domain 1 score: -0.7 bits; conditional E-value: 3 AAA_23 73 ay..veltfenkdgry...trsiererekskkkgk 102 +y ve++++n++ t si ++ ek+ ++ + 23726_FusoPortal_Gene_617 71 NYpkVEVKVSNENISLdqkTNSILNRAEKIMNEME 105 22223333222222111122222222222222222 PP == domain 2 score: -1.4 bits; conditional E-value: 5 AAA_23 24 ItGpNGaGKTTildAikl.aLygetprlsrks.......grgfeksdveiesegkvkayveltfenkdgry............. 86 + G+ G GKT+i++ + +L g++p+ +++ g ++++ e+e+ k++++ + e+++++ 23726_FusoPortal_Gene_617 203 LIGEPGVGKTAIVEGLAQrILNGDVPESLKNKkifsldmGALVAGAKYKGEFEERMKGVLKEVEESNGNIIlfideihtivgag 286 679999999999999997689999988777666888877445555555555554444443333333333334666666666777 PP AAA_23 87 ..........................................................................trsiererek 96 ++i+++ + 23726_FusoPortal_Gene_617 287 kgegsldagnmlkpmlargelrvigattideyrkyiekdpalerrfqtilvnepnvddtisilrglkdkfetyhGVRITDTGIV 370 777777777777888888888888877777777888888888888888888877777777777777777777774555555555 PP AAA_23 97 skkkgkttkkaklellei.....deleqfisellgskkiilnlilflgqer......fekfelkdkkerleelekeleeledek 169 + ++++ ++++l ++ de +i+++++s ++l+++ ++ + ek+ + + kerl+ +ekel el++ek 23726_FusoPortal_Gene_617 371 EAATLSQRYISDRKLPDKaidliDEAAAMIRTEIDSMPEELDQLTRKALQLeieikaLEKETDDASKERLKVIEKELAELNEEK 454 55555555555555555555556888899999998888877777666666666677666666688999**************** PP AAA_23 170 kllekl.eqekekekeleeleeeleeil 196 k l + e eke +++++++e+e+ + 23726_FusoPortal_Gene_617 455 KVLTSKwELEKEDISKIKNIKREIENVK 482 *877777666666666666666666543 PP == domain 3 score: 10.9 bits; conditional E-value: 0.00085 AAA_23 20 gltlItGpNGaGKTTildAiklaLygetprlsrks.............grgfeksdveiese.................gkvka 73 g +++ Gp+G GKT + + + L+ + r + + +k+ 23726_FusoPortal_Gene_617 601 GSFIFLGPTGVGKTYLAKTLAYNLFDSEDNVVRIDmseymdkfsvtrlI------------GappgyvgyeeggqlteaIRTKP 672 779**********************976666665553333333333320............13333333334333332223334 PP AAA_23 74 yveltfenkdgry......trsiererekskkkgkttkkaklellei...............deleqfisellgsk 128 y + f + + ++ ++ +++++g+ ++++++ ++ + +++++++ ++l+ + 23726_FusoPortal_Gene_617 673 YSVILFDEIEKAHpdvfnvLLQVLDDGRLTDGQGRIVDFKNTLIIMTsnigshfiledpnlsEDTREKVADELKAR 748 4333355554444555655333344555555555555555555544443344444444444433444444444433 PP >> ABC_tran ABC transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.3 0.0 0.19 1e+02 16 35 .. 203 222 .. 197 269 .. 0.86 2 ? -2.0 3.7 8.1 4.4e+03 48 109 .. 427 497 .. 398 586 .. 0.68 3 ? 9.3 0.0 0.0026 1.4 15 42 .. 604 631 .. 598 675 .. 0.82 Alignments for each domain: == domain 1 score: 3.3 bits; conditional E-value: 0.19 EEESTTSSHHHHHHHHTTSS CS xxxxxxxxxxxxxxxxxxxx RF ABC_tran 16 ivGenGaGKStLlkllagll 35 ++Ge G GK+ +++ la+ 23726_FusoPortal_Gene_617 203 LIGEPGVGKTAIVEGLAQRI 222 89**********99888765 PP == domain 2 score: -2.0 bits; conditional E-value: 8.1 EGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH......HHHTCHHHHHHCSTTGGTTCBGESTTS..GGS CS xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx RF ABC_tran 48 dlkeqeleslrkeigvlpqe.pqlfpeltvren......esdeeiekalsklglkelkdtvvkssp..ssL 109 l++++ ++++++v+++e ++l++e++v ++ e+ ++i+++ +++++++l+ ++++++ ++L 23726_FusoPortal_Gene_617 427 ALEKETDDASKERLKVIEKElAELNEEKKVLTSkwelekEDISKIKNIKREIENVKLEMEKAEREYdlTKL 497 44445555555566666666555555555555555555433333444444444444443333332222333 PP == domain 3 score: 9.3 bits; conditional E-value: 0.0026 EEEESTTSSHHHHHHHHTTSS--SEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ABC_tran 15 aivGenGaGKStLlkllagllkpteGei 42 ++G++G GK+ L+k+la +l + e+++ 23726_FusoPortal_Gene_617 604 IFLGPTGVGKTYLAKTLAYNLFDSEDNV 631 589**************98877766665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (859 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 2023 (0.121051); expected 334.2 (0.02) Passed bias filter: 632 (0.0378171); expected 334.2 (0.02) Passed Vit filter: 99 (0.00592389); expected 16.7 (0.001) Passed Fwd filter: 45 (0.00269268); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 31 [number of targets reported over threshold] # CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.36 # Mc/sec: 6936.50 // [ok]