# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_62.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_62 [L=694] Description: # 83152 # 85233 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.342 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-68 229.9 0.5 2.8e-68 229.2 0.5 1.3 1 GTP_EFTU Elongation factor Tu GTP binding domain 3.5e-48 162.3 0.1 7.3e-48 161.2 0.1 1.6 1 EFG_IV Elongation factor G, domain IV 7.3e-37 125.2 0.3 2.4e-36 123.5 0.3 2.0 1 EFG_II Elongation Factor G, domain II 3.5e-30 103.8 0.5 1.2e-29 102.0 0.0 2.3 2 EFG_C Elongation factor G C-terminus 2.8e-16 59.6 0.1 1.1e-15 57.6 0.1 2.1 1 GTP_EFTU_D2 Elongation factor Tu domain 2 2.6e-07 30.4 0.1 6.9e-07 29.0 0.1 1.7 1 RF3_C Class II release factor RF3, C-terminal domain 0.00096 19.1 0.1 0.0035 17.3 0.0 2.0 2 MMR_HSR1 50S ribosome-binding GTPase 0.006 15.8 0.0 0.011 15.0 0.0 1.4 1 AIG1 AIG1 family Domain annotation for each model (and alignments): >> GTP_EFTU Elongation factor Tu GTP binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 229.2 0.5 1.3e-71 2.8e-68 3 193 .. 10 281 .. 8 282 .. 0.95 Alignments for each domain: == domain 1 score: 229.2 bits; conditional E-value: 1.3e-71 EEEEEEEESTTSSHHHHHHHHHHHCTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTSSSEEEEEEEESSSGGGHHHH CS GTP_EFTU 3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskev 87 +rn+gi++h+D+GKtT+t+r+l++tg +k +e++e+++++D++++E+ergiTi+saa++++ +k ++in+iDtPGHvdF+ ev 23726_FusoPortal_Gene_62 10 TRNVGIMAHIDAGKTTTTERILFYTGVERKLKEVHEGQATMDWMEQEQERGITITSAATTCF--WKGHRINIIDTPGHVDFTVEV 92 69************************************************************..********************* PP HHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGCTHHHHHHHHHHHHHHHHHH................... CS GTP_EFTU 88 irglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk................... 153 +r+lrvlDgav v++av+Gv+pq+e+v+r+a k++vp+ f NKmDr++a+++++v+++k+kl ++ 23726_FusoPortal_Gene_62 93 ERSLRVLDGAVAVFSAVDGVQPQSETVWRQADKYKVPRLAFFNKMDRIGANFDMCVSDIKEKLGSNpvpiqipigaedqfegvvd 177 ***************************************************************999******************* PP .................................................................HHHHHHHHHCTTTTEEEEEE CS GTP_EFTU 154 .................................................................eeklekygekgekevpvvfg 173 + l+k++ ++ ++vpvv+g 23726_FusoPortal_Gene_62 178 liemkeivwpvdsdqgqhfdvkdiraelkekaeetrqymlesivetddalmekffggeeitkeeiIKGLRKATIDN-TIVPVVCG 261 ************************9999999999999999999999888888888888877777766677777776.6******* PP BTTTTCTHHHHHHHHHHHSH CS GTP_EFTU 174 Salkgegvktllealvellp 193 a+k++g+++ll+a+v+++p 23726_FusoPortal_Gene_62 262 TAFKNKGIQALLDAIVNYMP 281 ******************98 PP >> EFG_IV Elongation factor G, domain IV # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 161.2 0.1 3.5e-51 7.3e-48 1 121 [] 480 598 .. 480 598 .. 0.99 Alignments for each domain: == domain 1 score: 161.2 bits; conditional E-value: 3.5e-51 TCCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTTTTSSEEEEE--STCCCHCCCCHHHHCCCCCCTTS-TTTS--EES CS EFG_IV 1 pqVayrEtirkpvkereeklkkqsggdgqyakvileiePleegsgnefvdetkggqvpkeyieavekGfqealkeGplagepvtd 85 pqVayrEti++ ++ +e k++kqsgg+gqy++v + +eP++ g+++efv++++gg++p+eyi+avekG++eal++G++ag+p++d 23726_FusoPortal_Gene_62 480 PQVAYRETITQSCD-QEVKYAKQSGGRGQYGHVKIILEPNP-GKEFEFVNKITGGVIPREYIPAVEKGCKEALESGVIAGYPLVD 562 8*************.999*********************98.******************************************* PP EEEEEEEEE--TTTC-HHHHHHHHCHHHHHHHHCC- CS EFG_IV 86 vkvtLldgslhevdsseaafkpaarralkeallkAk 121 vkvtL+dgs+hevdsse+afk+a+++alk+a+ kAk 23726_FusoPortal_Gene_62 563 VKVTLYDGSYHEVDSSEMAFKIAGSMALKQAATKAK 598 *********************************996 PP >> EFG_II Elongation Factor G, domain II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 123.5 0.3 1.2e-39 2.4e-36 1 75 [] 405 479 .. 405 479 .. 0.98 Alignments for each domain: == domain 1 score: 123.5 bits; conditional E-value: 1.2e-39 EFG_II 1 fPePvisvaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelgk 75 fPePvisva+epk+k+d++k++ aL++l+eEDpt++v++deeT++ti+sGmGelHlei+v+r+kre+kve ++gk 23726_FusoPortal_Gene_62 405 FPEPVISVAVEPKTKNDQEKMGIALSKLAEEDPTFKVRTDEETGQTIISGMGELHLEIIVDRMKREFKVESNVGK 479 8*********************************************************************99985 PP >> EFG_C Elongation factor G C-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.1 3.2 6.7e+03 27 39 .. 352 364 .. 345 371 .. 0.74 2 ! 102.0 0.0 5.9e-33 1.2e-29 1 88 [. 600 686 .. 600 687 .. 0.98 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 3.2 HCT-EEEEEEEE. CS EFG_C 27 srrGeiedmeqda 39 +r G+i++m ++ 23726_FusoPortal_Gene_62 352 ERMGRILQMHANN 364 5899999999883 PP == domain 2 score: 102.0 bits; conditional E-value: 5.9e-33 EEEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHH CS EFG_C 1 vllEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdk 85 v+lEP++kve+++peey+g++i+dl+srrG + +m + +g +ii+a++Pl+e++g+at+Lrs ++G++++s+efs+Y +vp ++ 23726_FusoPortal_Gene_62 600 VILEPVFKVEVTTPEEYMGDIIGDLNSRRGMVSGMIDR-NGAKIITAKVPLSEMFGYATDLRSKSQGRATYSWEFSEYLQVPASI 683 59************************************.********************************************99 PP HHH CS EFG_C 86 lde 88 +++ 23726_FusoPortal_Gene_62 684 QKQ 686 987 PP >> GTP_EFTU_D2 Elongation factor Tu domain 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.6 0.1 5.3e-19 1.1e-15 1 74 [] 325 392 .. 325 392 .. 0.98 Alignments for each domain: == domain 1 score: 57.6 bits; conditional E-value: 5.3e-19 EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCSSCSSTTCEEE CS GTP_EFTU_D2 1 GtvalgrvysGtlkkGdevrilgndtskkeivtrisslltfhededeavaganaGvivaikgledaiivGdtlt 74 G++++ rvysG ++kG +v + ++++kk +r +++l +h++ +e+++ +++G+i+a++gl+d+ +Gdtl+ 23726_FusoPortal_Gene_62 325 GRLTFFRVYSGFVEKGATVLN--STKGKK---ERMGRILQMHANNREEIEHVYCGDIAAAVGLKDT-ATGDTLC 392 899******************..999999...*********************************6.******8 PP >> RF3_C Class II release factor RF3, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.0 0.1 3.3e-10 6.9e-07 14 95 .. 413 494 .. 404 509 .. 0.81 Alignments for each domain: == domain 1 score: 29.0 bits; conditional E-value: 3.3e-10 EEEESSGGGHHHHHHHHHHHHHCTSSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE-SSH. CS RF3_C 14 rvrlkdplkrkqlrkGleqLaeEGavqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwvesedek 95 v+ k + ++ +l++LaeE + +++e++ ++i++ +G+L +e++ +R+k+E++ve ++ + ++ + ++++ ++ 23726_FusoPortal_Gene_62 413 AVEPKTKNDQEKMGIALSKLAEEDPTFKVRTDEETGQTIISGMGELHLEIIVDRMKREFKVESNVGKPQVAYRETITQSCDQ 494 455666666777888899******99999999999******************************99999998888654442 PP >> MMR_HSR1 50S ribosome-binding GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.0 1.7e-06 0.0035 2 114 .] 13 136 .. 12 136 .. 0.61 2 ? -2.3 0.0 2 4.1e+03 73 103 .. 178 211 .. 165 222 .. 0.59 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 1.7e-06 EEEEESTTSSHHHHHHHHH..............T.S...TEEECSSTTSSSSCEEEEEEETTEEEEEEECGGTSSHHHHHH.HHH CS MMR_HSR1 2 vaivGrpNvGKStLinalt..............g.e...raivsdkpgtTrdinegrvklkgkeielvDtpGliegaseek.glg 67 v+i+ + +GK+t +++ g + + +++ g T++ + +kg++i+++DtpG ++ +++ 23726_FusoPortal_Gene_62 13 VGIMAHIDAGKTTTTERILfytgverklkevheGqAtmdWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD----FTvEVE 93 67777888999999999986665543333333212112133445555555555555555999**********665....222344 PP HHHHHHHHTSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEEC CS MMR_HSR1 68 kaflaleeadlillvvdavkeklkpldeeleelleeakkplilvlnk 114 ++++ d ++ v++a ++++p+ e++ + ++ k p + +nk 23726_FusoPortal_Gene_62 94 RSLRV---LDGAVAVFSA-VDGVQPQSETVWRQADKYKVPRLAFFNK 136 44442...4666666664.4458899888888877777777777776 PP == domain 2 score: -2.3 bits; conditional E-value: 2 HHHTSEEEEEEET...TTT.CSHHHHHHHHHHHHH CS MMR_HSR1 73 leeadlillvvda...vke.klkpldeeleellee 103 l+e++ i++ vd+ + + ++k+++ el+e ee 23726_FusoPortal_Gene_62 178 LIEMKEIVWPVDSdqgQ-HfDVKDIRAELKEKAEE 211 45678888888864431.13455566666665543 PP >> AIG1 AIG1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.0 0.0 5.3e-06 0.011 31 67 .. 57 93 .. 20 102 .. 0.89 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 5.3e-06 TTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHH CS AIG1 31 saqsvtkkcqkksrtwdgkkinViDTPglfdlsvsad 67 +++++t ++ + w+g++in+iDTPg +d v+ + 23726_FusoPortal_Gene_62 57 QERGITITSAATTCFWKGHRINIIDTPGHVDFTVEVE 93 67899999999999**************999988766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (694 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 395 (0.0236357); expected 334.2 (0.02) Passed bias filter: 331 (0.0198061); expected 334.2 (0.02) Passed Vit filter: 40 (0.00239349); expected 16.7 (0.001) Passed Fwd filter: 8 (0.000478698); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.31 # Mc/sec: 6508.00 // [ok]