# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_633.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_633 [L=425] Description: # 713297 # 714571 # 1 # ID=1_633;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.304 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-44 151.9 30.8 3e-44 151.3 30.8 1.3 1 CitMHS Citrate transporter 1.2e-23 84.0 32.5 1.6e-23 83.7 32.5 1.0 1 ArsB Arsenical pump membrane protein 3.3e-14 52.7 39.3 3e-08 33.1 16.9 2.2 2 Na_sulph_symp Sodium:sulfate symporter transmembrane region 3.5e-09 35.9 23.2 8.1e-07 28.1 0.9 2.9 3 NhaB Bacterial Na+/H+ antiporter B (NhaB) Domain annotation for each model (and alignments): >> CitMHS Citrate transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 151.3 30.8 7.1e-48 3e-44 2 300 .] 14 366 .. 13 366 .. 0.80 Alignments for each domain: == domain 1 score: 151.3 bits; conditional E-value: 7.1e-48 xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF CitMHS 2 vllileklrldvvallvlvll....vltieealsgi..aspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvll 78 ++i+ek++++++ + +++l+ ++++e++l+ i +i++ll+g+m+i+ +++etG+f++ a k+++l++g + l++ll 23726_FusoPortal_Gene_633 14 YCIITEKVPSSWATMAGGLLMtligITSQEQVLETIytRLEILFLLVGMMMIVLLISETGVFQWFAIKVAQLVRGEPFkLIILL 97 689*******************998888888887772245578***************************************** PP xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxx. RF CitMHS 79 vlltallsafvsndgvvlimipivlslakrlkklppllliplalaaniggaltpiGtpttraa.....arpglslpnllllal. 156 +++ta++saf++n++++l+m+p+ + lak+lk +p ++i +++anigg++t+iG+pt + + +++ +l+n + +a+ 23726_FusoPortal_Gene_633 98 SIVTAVCSAFLDNVTTILLMAPVSILLAKQLKLNPFPFVITEVMSANIGGLATLIGDPTQLIIgaegkLTFNEFLLNTAPVAIl 181 *****************************95555555*********************99999989998888899888877773 PP .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................xxxx RF CitMHS 157 .llvgllplvllfmfgvalalpvnapkvkkqkaiieaiarsllpv...................................atil 204 ++ +l+++++++ +k ++ + ++ ++++ ++++ 23726_FusoPortal_Gene_633 182 sMISLLATVYFMY---------------AKDMKVSNELKAKIMELdssrslkdikllkqsivifslviigfilnnfvdkgLAMI 250 3555567777777...............33333333333333333444444447888888887777777777777777664444 PP xxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxx RF CitMHS 205 lla................ykkveWsvlllfaGvfllvgaleqtGilealadllga......ggplvalalvlgliallsafis 266 +l ++ veW++l++f+G+f++ +++e++ i++ ++d + g a++ +++++a+++ +i+ 23726_FusoPortal_Gene_633 251 ALSgavclsllakknpkemFEGVEWETLFFFIGLFMMIKGIENLDIIKFIGDKMIHlteghfG---GAVFSTMWISAVFTSVIG 331 333788888899*********************************777777666334432232...333667************ PP xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF CitMHS 267 nvavaalmapialgmapalgl.lspsplalalavg 300 nva aa++ +i+ m p+ + + +l++al +g 23726_FusoPortal_Gene_633 332 NVANAATFSKIINIMTPSFSGvAGIKALWWALSFG 366 *****************55555679******9876 PP >> ArsB Arsenical pump membrane protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.7 32.5 3.8e-27 1.6e-23 3 420 .. 6 420 .. 3 423 .. 0.86 Alignments for each domain: == domain 1 score: 83.7 bits; conditional E-value: 3.8e-27 ArsB 3 vfiflltlvlviwqpknlsigwsacggavlaliagvvnfhdvltvtgivwnatlafvaiilislildnigffewaalhmakaak 86 ++if++ + +i +++ w++ g +l + g+ +vl + + +v +++i l++ + g+f+w a+++a+ + 23726_FusoPortal_Gene_633 6 ILIFIVVFYCII--TEKVPSSWATMAGGLLMTLIGITSQEQVLETIYTRLEILFLLVGMMMIVLLISETGVFQWFAIKVAQLVR 87 556665555544..44566789999999999999*********99999999999****************************** PP ArsB 87 gygvrmfvyvsllgaivaalfandgaaliltpivlamvralhfneklvfpfiiasgfiadttslpfvvsnlvnivsadyfhitf 170 g ++++ +s++ a+ +a++ n + l+++p+ + + + l++n fpf+i+ + a+ l ++ + +++ ++tf 23726_FusoPortal_Gene_633 88 GEPFKLIILLSIVTAVCSAFLDNVTTILLMAPVSILLAKQLKLNP---FPFVITEVMSANIGGLATLIGDPTQLIIGAEGKLTF 168 *******************************************95...**********************99999888899999 PP ArsB 171 idyasrmvvpylfsllasiivlylffrksipkrydl....tevkkpveaikdqnmfrlswyilgllligyfaseffsipvsvva 250 ++ ++s+++ + +y+++ k + +l e+ ++kd ++++ s i+ l++ig++ ++f+ ++++a 23726_FusoPortal_Gene_633 169 NEFLLNTAPVAILSMISLLATVYFMYAKDMKVSNELkakiMEL-DSSRSLKDIKLLKQSIVIFSLVIIGFILNNFVDKGLAMIA 251 9987766655556666666666666666666555551000444.356789********************************** PP ArsB 251 gsiaiifliaaqkspavhtkkvvkeapwaivffsigmyvvvygvrnagltdvlsdviqaaadqglfagti.gmgfiaailssim 333 s a+ + + a+k+p k++ + w +ff ig+++++ g+ n + + d + +g f g++ +i+a+++s++ 23726_FusoPortal_Gene_633 252 LSGAVCLSLLAKKNP----KEMFEGVEWETLFFFIGLFMMIKGIENLDIIKFIGDKMIHL-TEGHFGGAVfSTMWISAVFTSVI 330 *************99....78888999****************************88665.57899988735678********* PP ArsB 334 nnlptv..midalaiagtdthgmm.realiyanvigsdlgpkitpigslatllwlhvlshkgmkiswgtyfktgiiltiptlli 414 n+ + + i g+ +al +a gs lg +++ +gs + ++ + + g ki + ++k g i++i l+i 23726_FusoPortal_Gene_633 331 GNVANAatFSKIINIMTPSFSGVAgIKALWWALSFGSCLGGNLSLLGSATNVVAVGAADKAGCKIKFVQFLKFGGIIAIENLII 414 9997651144556677767777762589******************************************************** PP ArsB 415 tlvgly 420 + + +y 23726_FusoPortal_Gene_633 415 ASIYIY 420 988777 PP >> Na_sulph_symp Sodium:sulfate symporter transmembrane region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.9 18.5 1.3e-10 5.4e-07 274 461 .. 6 189 .. 2 196 .. 0.88 2 ! 33.1 16.9 7.1e-12 3e-08 212 462 .. 165 419 .. 161 424 .. 0.77 Alignments for each domain: == domain 1 score: 28.9 bits; conditional E-value: 1.3e-10 Na_sulph_symp 274 ilfvlllllWifgeslnidattvaivvlvillllrvldWkDivkq.ktaWntllllgglialakllersgliewlgnklttsls 356 il+ ++++ i e++ + ++ ++ ++ l+ + + + +++ t ++l+ll g++++ l +++g+++w++ k+++++ 23726_FusoPortal_Gene_633 6 ILIFIVVFYCIITEKV--PSSWATMAGGLLMTLIGITSQEQVLETiYTRLEILFLLVGMMMIVLLISETGVFQWFAIKVAQLVR 87 5666666666666665..688888999************99998735789********************************** PP Na_sulph_symp 357 glspavaiiiilslfvlvhylfaSatAttaallpillavaqaipgappllvalllalatslagfllpyatgpnpivfgagylkv 440 +ii+ls++ +v f ++ t+ ++p+ + +a+ + + +p ++++ +++ +++g+ + ++ + i+ + g+l 23726_FusoPortal_Gene_633 88 --GEPFKLIILLSIVTAVCSAFLDNVTTILLMAPVSILLAKQL-KLNPFPFVITEVMSANIGGLATLIGDPTQLIIGAEGKLTF 168 ..5567899**********************************.88899999999***************************** PP Na_sulph_symp 441 kdywrlGfilsiigllillll 461 +++ ++++i++++ ll + 23726_FusoPortal_Gene_633 169 NEFLLNTAPVAILSMISLLAT 189 ********9999987655443 PP == domain 2 score: 33.1 bits; conditional E-value: 7.1e-12 Na_sulph_symp 212 eitwasWflaaiptgvillllvplllyvlyppeikkkeeakavak..telkelGpltarekallilfvlllllWifgeslnida 293 ++t+ + +l p+ +++++ +y +y +k ++e ka + + + l ++ ++++ ++f l++++ i +++++ 23726_FusoPortal_Gene_633 165 KLTFNEFLLNTAPVAILSMISLLATVYFMYAKDMKVSNELKAKIMelDSSRSLKDIKLLKQSI-VIFSLVIIGFILNNFVDKGL 247 68999****************999***********9997666554125678888888887776.5688899999*****98788 PP Na_sulph_symp 294 ttvaivvlvillllrvldWkDivkqktaWntllllgglialakllersgliewlgnklttsls.glspavaiiiilslfvlvhy 376 +++a+ + v l ll + k + + W+tl+++ gl ++ k+ e++ +i+++g+k++ + + + +av + +s+++++ + 23726_FusoPortal_Gene_633 248 AMIALSGAVCLSLLAKKNPK-EMFEGVEWETLFFFIGLFMMIKGIENLDIIKFIGDKMIHLTEgHFGGAVFSTMWISAVFTSVI 330 88888888877777766666.6778999*********************************99444444444455555555555 PP Na_sulph_symp 377 lfaSatAttaallpillavaqaipgappllvalllalatslagfllpyatgpnpivfgagy.....lkvkdywrlGfilsiigl 455 ++At + ++ i+ +++g+ + +l + + l+g l ++++ n+++ ga + +k ++ + G i++i +l 23726_FusoPortal_Gene_633 331 GNVANAATFSKIINIMTPSFSGVAGI--KALWWALSFGSCLGGNLSLLGSATNVVAVGAADkagckIKFVQFLKFGGIIAIENL 412 55555555555555555555555455..6667788999********************976333337788999*******9999 PP Na_sulph_symp 456 lillllg 462 +i + + 23726_FusoPortal_Gene_633 413 IIASIYI 419 9876655 PP >> NhaB Bacterial Na+/H+ antiporter B (NhaB) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 9.8 7.1e-07 0.003 66 159 .. 28 121 .. 5 126 .. 0.80 2 ! 28.1 0.9 1.9e-10 8.1e-07 212 333 .. 142 252 .. 134 265 .. 0.72 3 ? -1.4 0.1 0.18 7.5e+02 210 235 .. 364 389 .. 333 418 .. 0.67 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 7.1e-07 NhaB 66 qpggllaieaviigmtsaeqvkeeivanlevllllvfmvagiyfmkqlllfif..tklllkirsk.illslafclaaaflsafl 146 + ggll +ig+ts eqv e i + le+l+llv m+ + ++ + +f + k+ +r l +++ + +a safl 23726_FusoPortal_Gene_633 28 MAGGLLM---TLIGITSQEQVLETIYTRLEILFLLVGMMMIVLLISETGVFQWfaIKVAQLVRGEpFKLIILLSIVTAVCSAFL 108 5677774...58************************9999999998877765412566677887636788899999******** PP NhaB 147 daltvvavvisva 159 d +t + ++ v+ 23726_FusoPortal_Gene_633 109 DNVTTILLMAPVS 121 ****998877665 PP == domain 2 score: 28.1 bits; conditional E-value: 1.9e-10 NhaB 212 gtalggvvtlvgepqnliiaeqakwkfgefllrmspvtvpvlicglltcllveklklfgygeklpdevrkilvdfdreerkkrt 295 + +gg++tl+g+p +lii ++ k +f efll +pv++ +i+ l t+++ ++ k+ +e++ ++++d++ + k 23726_FusoPortal_Gene_633 142 SANIGGLATLIGDPTQLIIGAEGKLTFNEFLLNTAPVAILSMISLLATVYF-----MYAKDMKVSNELKAKIMELDSSRSLKD- 219 5679**************************************999988876.....466677788888888888887655443. PP NhaB 296 kqdkiklivqaliavwlivalalhlaavgliglsviil 333 ikl+ q+++ +v + + l + gl++i l 23726_FusoPortal_Gene_633 220 ----IKLLKQSIVIF-SLVIIGFILNNFVDKGLAMIAL 252 ....55555554433.3333444444444444444444 PP == domain 3 score: -1.4 bits; conditional E-value: 0.18 NhaB 210 gvgtalggvvtlvgepqnliiaeqak 235 g++lgg ++l+g n++ +a+ 23726_FusoPortal_Gene_633 364 SFGSCLGGNLSLLGSATNVVAVGAAD 389 56777888888888777777543332 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (425 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1067 (0.0638463); expected 334.2 (0.02) Passed bias filter: 376 (0.0224988); expected 334.2 (0.02) Passed Vit filter: 33 (0.00197463); expected 16.7 (0.001) Passed Fwd filter: 8 (0.000478698); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.32 # Mc/sec: 3860.90 // [ok]