# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_650.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_650 [L=358] Description: # 735966 # 737039 # 1 # ID=1_650;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.299 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-72 242.2 0.4 7.7e-72 242.0 0.4 1.0 1 GDPD Glycerophosphoryl diester phosphodiesterase family Domain annotation for each model (and alignments): >> GDPD Glycerophosphoryl diester phosphodiesterase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 242.0 0.4 4.6e-76 7.7e-72 1 258 [. 30 344 .. 30 345 .. 0.99 Alignments for each domain: == domain 1 score: 242.0 bits; conditional E-value: 4.6e-76 TTTTTTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH...........BGGGS-HHHHHTST... CS GDPD 1 HRGasgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagr..........ldvkdltleelkrld... 71 HRGasg+lpE+Tles+a A+++ ady+E+D++++kDg+++v+HD++ld +tdva++ ++v d+t+ el++l+ 23726_FusoPortal_Gene_650 30 HRGASGYLPEHTLESKALAFAQQADYLEQDLAMSKDGKLIVIHDHFLDGLTDVAKKfpnrkradgrYYVIDFTWPELQTLEmte 113 ************************************************************************************ PP ..ECCTTCCCCSCCCSSGCC...B...BHHHHHHHHHHCCSEEEEEEECCCCCCCHHHH.HHTCHHHCCCCCSCHHTT..STTC CS GDPD 72 ..kiakenkaqlsenrvrle...fpfptleevlkkpqnvglnieikipmlseakeeeel.qivkeilksvdeilkkvlkkadkr 149 +++++++ ++++nr++l+ f+++t+ee ++++q++++++++ki++++e+k+++++ q+ k+i+k++ e+lkk++++++ + 23726_FusoPortal_Gene_650 114 nfTTKDGKQTAVYPNRFPLWksdFKLHTFEEEIEFIQGLEKSTGKKIGIYPEIKAPWFHhQNGKDIAKATLEVLKKYGYTKKSD 197 **99999***************************************************************************** PP SCEEEESTHHHHHHHHHTCT.....CTEEEEEEHHHHHHC-E.......EECHCCCCCCCTCCCCHHCCCHCCCE......... CS GDPD 150 kvifssfnpdilkllrekqp.....klpllflteggteaead......ssleraakfakadallgevsavaeglg......... 213 +v++++f+ ++lk+++++++ +l+l++l+ ++++ e+ ++++++++++ +++ ++e++++a+g+g 23726_FusoPortal_Gene_650 198 MVYLQTFDYNELKRIKTELMpkmgmDLKLVQLIAYNDWHETEekdkngKWVNYDYDWMFKEGAMKEIAKYADGVGpgwymlidd 281 ************************************************************************************ PP .........B.CHHHHHHHTT-EEEEBSB-THS.........HHHHHHHHCCC-SEEEES-HH CS GDPD 214 .........dpdlVkraksrglvvhvytvnned.........eeemkrlleagvdgvitDfpd 258 ++++Vk++++ ++++h+ytv++++ ++++++l++ag +gv+tDfpd 23726_FusoPortal_Gene_650 282 knskvgnivYTPMVKDIATTKMELHPYTVRKDAlpefftdvnQMYDALLNKAGATGVFTDFPD 344 **************************************************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (358 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 462 (0.0276448); expected 334.2 (0.02) Passed bias filter: 311 (0.0186094); expected 334.2 (0.02) Passed Vit filter: 23 (0.00137626); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.24u 0.22s 00:00:00.46 Elapsed: 00:00:00.32 # Mc/sec: 3252.24 // [ok]