# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_655.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_655 [L=811] Description: # 744533 # 746965 # 1 # ID=1_655;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.286 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-61 205.5 1.2 1.7e-60 204.6 1.1 1.5 2 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase 4.6e-56 188.9 7.4 8.5e-56 188.1 7.4 1.5 1 DrsE_2 DsrE/DsrF/DrsH-like family 8.1e-19 67.9 2.1 6.4e-18 64.9 0.6 2.4 2 Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase 2.7e-17 63.0 8.8 7e-17 61.7 0.2 3.6 3 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase 6.2e-16 57.9 0.0 1.7e-15 56.5 0.0 1.8 1 TusA Sulfurtransferase TusA 9.4e-14 51.5 0.0 3.7e-13 49.6 0.0 2.1 1 Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase 5.8e-09 36.2 0.2 5.7e-05 23.4 0.0 2.6 2 DrsE DsrE/DsrF-like family 1.7e-08 34.8 0.0 5.4e-08 33.2 0.0 1.8 1 Rhodanese Rhodanese-like domain 9.6e-07 28.9 2.4 0.0068 16.5 0.1 2.9 2 NAD_binding_8 NAD(P)-binding Rossmann-like domain 9.4e-05 22.0 5.2 0.15 11.5 0.3 4.0 4 DAO FAD dependent oxidoreductase 0.0004 19.1 2.2 0.55 8.8 0.1 3.9 4 HI0933_like HI0933-like protein 0.00064 19.7 0.3 5.5 6.9 0.0 4.2 4 NAD_binding_9 FAD-NAD(P)-binding 0.0017 17.9 1.2 0.01 15.3 0.2 2.4 2 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, 0.0039 16.4 0.5 0.15 11.2 0.1 2.8 3 FAD_binding_3 FAD binding domain 0.0066 15.7 0.4 0.019 14.2 0.0 1.9 2 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain 0.0089 15.6 0.1 0.019 14.5 0.1 1.5 1 DUF2271 Predicted periplasmic protein (DUF2271) ------ inclusion threshold ------ 0.016 14.9 0.1 0.016 14.9 0.1 2.5 2 Arg_repressor Arginine repressor, DNA binding domain 0.021 15.2 2.9 0.52 10.7 0.0 3.7 3 NAD_binding_7 Putative NAD(P)-binding 0.025 13.6 0.0 0.046 12.7 0.0 1.4 1 K_oxygenase L-lysine 6-monooxygenase (NADPH-requiring) 0.034 13.1 0.2 1.7 7.5 0.0 2.5 2 Lycopene_cycl Lycopene cyclase protein 0.038 13.0 1.6 0.12 11.4 0.2 2.6 2 GIDA Glucose inhibited division protein A 0.063 12.4 0.0 0.49 9.5 0.0 2.2 2 Amino_oxidase Flavin containing amine oxidoreductase 0.065 13.1 0.1 0.15 11.9 0.1 1.6 1 DUF2612 Protein of unknown function (DUF2612) 0.17 11.6 0.9 2.1 8.1 0.1 2.6 2 SinI Anti-repressor SinI Domain annotation for each model (and alignments): >> Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 204.6 1.1 2.5e-63 1.7e-60 1 291 [. 2 307 .. 2 308 .. 0.92 2 ? -3.7 0.0 7.3 5.1e+03 12 29 .. 518 535 .. 515 572 .. 0.74 Alignments for each domain: == domain 1 score: 204.6 bits; conditional E-value: 2.5e-63 ESEEEE--SHHHHHHHHHHHH..HTS-EEEEETTHHHHHHSHHHHHHHHHHHHHHHE.....HHHHHHHHHHHHHHHHTTEEEE CS xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx RF Pyr_redox_2 1 kdvvviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgaaedaei.....evvkklnqgielllgeevvkid 77 k+v+++Gg ++G ++a++l++ +++++++e+++++ + c l++ + + +++e + k + +++++ ++evv++ 23726_FusoPortal_Gene_655 2 KKVLIVGGVAGGASTATRLRRldENLEIVIFEKGEYVSFANCGLPYYIGDIIQNRESllvqtPESLKARFNLDVRVNSEVVGVN 85 58*******************877********************************56678844566777888888888****7 PP ECEEEEEETCEEETCEEEEEESEEEE---EEE-BCTSTTCHCCBEECCSECHHHHHCTCSS-T...SEEEEES-SHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF Pyr_redox_2 78 pgkkkvklekkkegkeekiaydklviAtGsrprdlgipGvaenviklvrtldsaealklkllp...krivvvGgGyiGvElAaa 158 + kkvk+++k+ g+e + +d lv+A+G++p + i+G +++ i+ +r++++ +++k + ++ k+++v+GgGy+G+E+A 23726_FusoPortal_Gene_655 86 GKDKKVKVKTKN-GEEYEEIFDFLVLAPGAKPIFPAIKGIENKKIFTLRNINDMDKIKAEIKNhnvKKATVIGGGYVGIETAEN 168 7779****6555.78888889******************************************877799*************** PP HHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEETCEEEEEEECTCCEEEEETTSCEEEESEEEE-S-EEES-HHC CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF Pyr_redox_2 159 laklgkevtlveardrllraldkelsaalekalekeGvevklgtsvkeidgngeklevvlkdgeeieadlvvvavGvrpstell 242 l+ lg ++tl+ea++++l ++d+e+s++le +l ++G++++ ++v+e++++g+++ ++l++g+ + +d++++++Gv+p+t++l 23726_FusoPortal_Gene_655 169 LKHLGIDTTLIEAAPHILAPFDSEISNILEYELVNNGINLMISEKVVEFQEDGNEIIIKLESGKIVTTDMLILSIGVSPDTKFL 252 ******************************************************999*************************** PP SHGCT-EECCTTEEE--TTSBESSTTEEE-GGGC.......TETTSS--HHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF Pyr_redox_2 243 eealglelderggivvdeflrtsvpgiyaiGDva.......ggkggpelaqaAvqq 291 +++g++l erg i+v+e+l+t+++giya+GD + +++ + la A +q 23726_FusoPortal_Gene_655 253 -QNSGINLGERGHILVNEKLETNIDGIYALGDSIivknyitNQDVAIPLAGPANRQ 307 .*******************************996666666666666666666555 PP == domain 2 score: -3.7 bits; conditional E-value: 7.3 HHHHHHHHHHHTS-EEEE CS xxxxxxxxxxxxxxxxxx RF Pyr_redox_2 12 Glaaaltlaqagakvtlv 29 G+ a+++l q+g+kv + 23726_FusoPortal_Gene_655 518 GYIASRFLTQKGYKVKNL 535 777888888888887644 PP >> DrsE_2 DsrE/DsrF/DrsH-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 188.1 7.4 1.2e-58 8.5e-56 3 156 .] 658 809 .. 656 809 .. 0.97 Alignments for each domain: == domain 1 score: 188.1 bits; conditional E-value: 1.2e-58 -EEEEEE----H.HHHHHHHHHHHHHHTT-EEEEEE-GGGGGGGB-GGG---TT--HHHHHHHHHS-SSGG---SSS-GGGHHH CS DrsE_2 3 kklaiiaskgtldkalaalilAngAaalglevtiFftFwGLnilrkeekkkvkkkslekmamkmvprkskklklskmnmagigt 86 ++++++++g+ldka+aa+i+AngA +g++vt+FftFwGL il+k++ kk+++ekm+++m+p++s++l++skmn+ gig+ 23726_FusoPortal_Gene_655 658 SNMTMVVFSGDLDKAIAAFIIANGALTMGKKVTMFFTFWGLSILKKKK--LAKKSFIEKMFAMMLPKNSQDLPVSKMNFFGIGA 739 6788999999999*******************************9876..5689****************************** PP HHHHHHHHHCT---HHHHHHHHHHTT-EEEEEHHHHHHHT--GGGB-TT-EEE-HHHHHHHHHC-SEEEE CS DrsE_2 87 kmmkkvmkekgvasleeLleaakeagvklvaCqmtvdllglkkeelidgveiagaatylkeaeeadvnLf 156 km+++vmk+k+++sleeL+++ak++g++++aC+m++d++g++keelidg++++g+ +yl+e e+++ nLf 23726_FusoPortal_Gene_655 740 KMIRSVMKKKNIMSLEELMKKAKDSGINITACTMSMDVMGISKEELIDGINYGGVGQYLGETEKSNNNLF 809 *********************************************************************9 PP >> Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 0.0 0.26 1.8e+02 1 34 [. 5 39 .. 5 43 .. 0.85 2 ! 64.9 0.6 9.2e-21 6.4e-18 89 305 .] 66 282 .. 54 282 .. 0.83 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 0.26 Pyr_redox_3 1 iIiGaGPaGlaaaielkkagl.edylilEkgnign 34 +I+G+ + G ++a+ l++++ +++i Ekg+ + 23726_FusoPortal_Gene_655 5 LIVGGVAGGASTATRLRRLDEnLEIVIFEKGEYVS 39 69***************98763479999***9886 PP == domain 2 score: 64.9 bits; conditional E-value: 9.2e-21 Pyr_redox_3 89 evaesfelpiklfeeVesvkkedegfevetske.tyeA..kkviiAtGefdkPnklnipGeeklvk.hysev......k.efhk 161 ++ ++f+l+++ ++eV v+ +d++ +v+t+++ +ye + +++A G kP + i+G e++++ +++ k e+++ 23726_FusoPortal_Gene_655 66 SLKARFNLDVRVNSEVVGVNGKDKKVKVKTKNGeEYEEifDFLVLAPGA--KPIFPAIKGIENKKIfTLRNIndmdkiKaEIKN 147 56789**************************97689853389******9..**********96444244555111111124444 PP Pyr_redox_3 162 yagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseieaeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeey 245 + +k +ViGg+ ++++A +l g + t++ +i a ++ +++ + e +l +++ i+++ ++v e +e+ +e+ 23726_FusoPortal_Gene_655 148 HNVKKATVIGGGYVGIETAENLKHLGIDTTLIEAAPHILAP---FDSEISNILEYELV---NNG-INLMISEKVVEFQEDGNEI 224 556799*****************************988886...56666666666663...345.******************* PP Pyr_redox_3 246 kvktedgkkveskddvvlatGykpdlsflkkslfeldedgrpvlteeteeTnvpglflaG 305 +k e+gk v+ +d +l +G +pd++fl++s+++l e g+++++e + eTn++g++ G 23726_FusoPortal_Gene_655 225 IIKLESGKIVT-TDMLILSIGVSPDTKFLQNSGINLGERGHILVNE-KLETNIDGIYALG 282 ******97766.5889************************999987.579*******987 PP >> Pyr_redox Pyridine nucleotide-disulphide oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.8 0.2 3.1 2.2e+03 1 28 [. 3 30 .. 3 39 .. 0.82 2 ? 4.6 0.4 0.065 45 49 80 .. 66 97 .. 52 100 .. 0.83 3 ! 61.7 0.2 1e-19 7e-17 2 77 .. 153 227 .. 152 231 .. 0.93 Alignments for each domain: == domain 1 score: -0.8 bits; conditional E-value: 3.1 EEEEECSSHHHHHHHHHHHHTTSEEEEE CS Pyr_redox 1 kvvvvGgGyiglElAgalaelgkkVtvv 28 kv++vGg g A+ l++l + +v 23726_FusoPortal_Gene_655 3 KVLIVGGVAGGASTATRLRRLDENLEIV 30 799****999999999999998766555 PP == domain 2 score: 4.6 bits; conditional E-value: 0.065 HHHHT.TEEEECSEEEEEEEEETTSEEEEEEET CS Pyr_redox 49 klekn.gievllntkveeiegsedgvesvklkd 80 +l+++ + +v+ n++v+ ++g++++v+ vk+k+ 23726_FusoPortal_Gene_655 66 SLKARfNLDVRVNSEVVGVNGKDKKVK-VKTKN 97 566666899***************865.88765 PP == domain 3 score: 61.7 bits; conditional E-value: 1e-19 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EEEEE CS Pyr_redox 2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedg.vesvk 77 ++v+GgGy+g+E A++l++lg ++t++e+++++l +D e+s+il+ +l +ngi+++ ++kv+e+++++++ + +k 23726_FusoPortal_Gene_655 153 ATVIGGGYVGIETAENLKHLGIDTTLIEAAPHILAPFDSEISNILEYELVNNGINLMISEKVVEFQEDGNEiI--IK 227 78****************************************************************9999732..44 PP >> TusA Sulfurtransferase TusA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.5 0.0 2.5e-18 1.7e-15 2 70 .] 570 638 .. 569 638 .. 0.94 Alignments for each domain: == domain 1 score: 56.5 bits; conditional E-value: 2.5e-18 EEEBTT-STTCCHHHHHHHHCCCGCT-EEEEEESSCHHHHHHHHHHHHHTEEEEEEE-GCC-EEEEEEE CS TusA 2 elDlrGlvCPePllklkkalekleegevlevladdpaatediprfakklghelveveeedgeyrivirk 70 lDl+Gl+CP+Pl+k+k++++kl+e +l+v ++dp++ +di+++ k +++ l++ +++dg +++k 23726_FusoPortal_Gene_655 570 YLDLSGLSCPGPLVKIKEKIDKLQESKKLKVKVSDPGFYNDIQAWSKVTKNSLLSLDKKDGLTYATLQK 638 69********************************************************99987776665 PP >> Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.6 0.0 5.3e-16 3.7e-13 5 103 .. 332 431 .. 328 437 .. 0.90 Alignments for each domain: == domain 1 score: 49.6 bits; conditional E-value: 5.3e-16 EESSSEEEEEES-HHHHHHHCSGEEEEEEEECCGHHHHHTTH.TEEEEEEEEETTTTBEEEEEEEE.TTHHHHHHHHHHHHHTT CS Pyr_redox_dim 5 vftdpevasvGlteeeAkaagieikvgkfpfkangralayae.tkgfvKlvadaktgkvlGahivG.pgageliqelavaikag 86 + +++ as+Gl+e ++k+ i + k+++ +n++a +y+ t + +K ++++++g++lGa+ vG g+++ i+ +a+ ik++ 23726_FusoPortal_Gene_655 332 KIFELTGASTGLNERSLKQLN--IPYEKVYLHPNNHAAYYPGaTAISIKALYNKENGQILGAQAVGiSGVDKFIDVIATSIKFK 413 5677788**************..7788999999********99***********************778888************ PP SBHH.HHHTSBSSSSSTG CS Pyr_redox_dim 87 ltve.dladtihihPtls 103 +t++ + +++++P++ 23726_FusoPortal_Gene_655 414 ATIDdLTELELAYAPPFL 431 ****558899***99975 PP >> DrsE DsrE/DsrF-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.7 0.1 0.00071 0.49 6 63 .. 664 714 .. 659 723 .. 0.76 2 ! 23.4 0.0 8.2e-08 5.7e-05 27 103 .. 722 796 .. 713 805 .. 0.84 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00071 EE-S-TTTBSHHHHHHHHHHHHHTTT-EEEEEE-GGGGGGGBS---TGGGTS---GGG CS DrsE 6 lvtggpygseaarealelalaaaalghevsvffygdGvllllkgqtanpadeknlael 63 +++ + ++a +a+ +a+ a+++g +v +ff+ G +l+k ++ + k+++e+ 23726_FusoPortal_Gene_655 664 VFS---GDLDKAIAAFIIANGALTMGKKVTMFFTFWGLSILKK----KKLAKKSFIEK 714 444...3677899******************************....33333555444 PP == domain 2 score: 23.4 bits; conditional E-value: 8.2e-08 HHTTT-EEE.EEE-GGGGGGGBS---TGGGTS---GGGGGGCGGGT-EEEEEHHHHHHTT--GGGE-T--EEEE-HHH CS DrsE 27 aaalghevs.vffygdGvllllkgqtanpadeknlaellkalkeygvklyvCgqaakargldededlgvgvevsglge 103 +++++ vs + f g G++++++ ++++ +l el+k++k+ g+ + +C ++++ +g++++e++ g+ +g+g+ 23726_FusoPortal_Gene_655 722 KNSQDLPVSkMNFFGIGAKMIRS--VMKKKNIMSLEELMKKAKDSGINITACTMSMDVMGISKEELI-DGINYGGVGQ 796 4677788888999999*******..557778899****************************77777.6888888876 PP >> Rhodanese Rhodanese-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.2 0.0 7.8e-11 5.4e-08 8 102 .. 462 540 .. 457 541 .. 0.91 Alignments for each domain: == domain 1 score: 33.2 bits; conditional E-value: 7.8e-11 Rhodanese 8 llekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGy 91 + +++++++lDvR++ e g +++++n+ pl el ++ el ++k++ +yc+ g r a ++l++ G 23726_FusoPortal_Gene_655 462 NYNEKETIILDVREELELISGKLNNSINI-------------PLSELRKRCTEL--PKDKEIWTYCAVGLRGYIASRFLTQKG- 529 44555567**********99*********.............***********9..***************9999********. PP Rhodanese 92 knvsvldGGfk 102 ++v++l GG+k 23726_FusoPortal_Gene_655 530 YKVKNLAGGIK 540 8********86 PP >> NAD_binding_8 NAD(P)-binding Rossmann-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.5 0.1 9.8e-06 0.0068 1 32 [. 6 39 .. 6 43 .. 0.90 2 ! 11.2 0.1 0.00045 0.31 1 31 [. 155 185 .. 155 187 .. 0.97 Alignments for each domain: == domain 1 score: 16.5 bits; conditional E-value: 9.8e-06 EE--SHHHHHHHHHHHC..CTEEEEEE-SSSSSS CS NAD_binding_8 1 IVGaGlsGlaaAylLak..agfdvllfekrdrlG 32 IVG+ ++G+++A +L++ +++++++fek+++++ 23726_FusoPortal_Gene_655 6 IVGGVAGGASTATRLRRldENLEIVIFEKGEYVS 39 9****************5449*********9875 PP == domain 2 score: 11.2 bits; conditional E-value: 0.00045 EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS NAD_binding_8 1 IVGaGlsGlaaAylLakagfdvllfekrdrl 31 ++G+G G+ +A L+ g+d +l+e+++++ 23726_FusoPortal_Gene_655 155 VIGGGYVGIETAENLKHLGIDTTLIEAAPHI 185 8***************************997 PP >> DAO FAD dependent oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.2 0.1 0.009 6.2 1 32 [. 3 38 .. 3 45 .. 0.82 2 ? 3.1 0.0 0.077 54 162 203 .. 74 115 .. 65 134 .. 0.71 3 ! 11.5 0.3 0.00021 0.15 3 30 .. 154 183 .. 152 187 .. 0.88 4 ? -0.1 0.0 0.74 5.2e+02 156 233 .. 201 274 .. 195 317 .. 0.67 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.009 EEEEECTSHHHHHHHHHHHHT.T....EEEEESSSST CS DAO 1 dvviiGGGiiGlstAyeLarr.g....Vtllekgdia 32 +v+i+GG G+stA L rr ++++ekg+ + 23726_FusoPortal_Gene_655 3 KVLIVGGVAGGASTATRL-RRlDenleIVIFEKGEYV 38 599***************.55445799******9654 PP == domain 2 score: 3.1 bits; conditional E-value: 0.077 EEEESECEEEEEEEETCEEEEEEECTEEE..EEEEEEEE--GGG CS DAO 162 eilegtevtgleeedgkvwgverttpgen..daadavVnaaGaw 203 +++ ++ev+g++ +d+k ++v +t++ge+ +++d +V+a Ga 23726_FusoPortal_Gene_655 74 DVRVNSEVVGVNGKDKK-VKV-KTKNGEEyeEIFDFLVLAPGAK 115 678899*****556555.556.45556664447788*****986 PP == domain 3 score: 11.5 bits; conditional E-value: 0.00021 EEECTSHHHHHHHHHHHHT.T..EEEEESSS CS DAO 3 viiGGGiiGlstAyeLarr.g..Vtllekgd 30 +iGGG++G+ tA L ++ g +tl+e+++ 23726_FusoPortal_Gene_655 154 TVIGGGYVGIETAENL-KHlGidTTLIEAAP 183 7***************.66699******985 PP == domain 4 score: -0.1 bits; conditional E-value: 0.74 HHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH.HH.HTTCTTTSEE.EEEEEEEEEEEECCTH CS DAO 156 aealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsd.ll.gllkeldlpi.spvrgqvlvlkplsek 233 + ++G+++ ++v++++e+ g + + ++g +++ d ++++ G+ d ++ ++ i + rg++lv ++l+ + 23726_FusoPortal_Gene_655 201 LVNNGINLMISEKVVEFQED-GNEIII-KLESGKIVTTDMLILSIGVSPDtKFlQNS-----GInLGERGHILVNEKLETN 274 67888888888999999664.333333.344476644477******99988542333.....2339999999999776553 PP >> HI0933_like HI0933-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.2 0.0 0.85 5.9e+02 2 33 .. 3 36 .. 2 39 .. 0.84 2 ? 1.3 0.0 0.15 1e+02 123 165 .. 72 115 .. 58 120 .. 0.80 3 ! 5.6 0.1 0.0071 4.9 2 36 .. 152 186 .. 151 191 .. 0.91 4 ! 8.8 0.1 0.00079 0.55 110 163 .. 192 244 .. 188 249 .. 0.91 Alignments for each domain: == domain 1 score: -1.2 bits; conditional E-value: 0.85 SEEEE--SHHHHHHHHHH..HHTT--EEEE-SSS CS HI0933_like 2 dviviGgGaAGlmaAisa..akrgakVlllekak 33 +v+++Gg a G +A ++ +++ +++++ek++ 23726_FusoPortal_Gene_655 3 KVLIVGGVAGGASTATRLrrLDENLEIVIFEKGE 36 799************9995556788899999986 PP == domain 2 score: 1.3 bits; conditional E-value: 0.15 T-EEE-S--EEEEECETTE.EEEEE.TTEEEE..ESEEEE----S CS HI0933_like 123 gvklrletevksvekeedgkfrvktkseeele..adklvlAtGGk 165 + ++r+++ev +v+ ++++ ++vktk++ee+e d lvlA G k 23726_FusoPortal_Gene_655 72 NLDVRVNSEVVGVNGKDKK-VKVKTKNGEEYEeiFDFLVLAPGAK 115 678999*******765555.*****99998874468999998876 PP == domain 3 score: 5.6 bits; conditional E-value: 0.0071 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS HI0933_like 2 dviviGgGaAGlmaAisaakrgakVlllekakklg 36 + viGgG G+ +A+++++ g +++l+e+a++++ 23726_FusoPortal_Gene_655 152 KATVIGGGYVGIETAENLKHLGIDTTLIEAAPHIL 186 578**************************998775 PP == domain 4 score: 8.8 bits; conditional E-value: 0.00079 HHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS HI0933_like 110 divdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163 +i ++l+ el ++g++l+ +++v +++++ ++ + +k++s++ +++d l+l++G 23726_FusoPortal_Gene_655 192 EISNILEYELVNNGINLMISEKVVEFQEDGNE-IIIKLESGKIVTTDMLILSIG 244 78899*********************776666.9****9************998 PP >> NAD_binding_9 FAD-NAD(P)-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 0.1 0.077 54 2 35 .. 6 36 .. 5 44 .. 0.89 2 ! 6.9 0.0 0.0078 5.5 111 154 .. 67 113 .. 57 115 .. 0.81 3 ? -0.1 0.0 1.1 7.9e+02 2 19 .. 155 172 .. 154 192 .. 0.82 4 ? 3.2 0.0 0.1 72 119 154 .. 209 244 .. 193 246 .. 0.88 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.077 NAD_binding_9 2 ivGaGprGlavlerLlarakkkspleitlfdpse 35 ivG+ + G+++++rL + +++lei +f++ e 23726_FusoPortal_Gene_655 6 IVGGVAGGASTATRLRRL---DENLEIVIFEKGE 36 9999999********999...7*********965 PP == domain 2 score: 6.9 bits; conditional E-value: 0.0078 NAD_binding_9 111 lpegvtvev.hraevvdlekradgqavlladgasl..aadaVvLAlG 154 l+++++++v +++evv+++ ++++++v +++g+++ +d +vLA G 23726_FusoPortal_Gene_655 67 LKARFNLDVrVNSEVVGVNGKDKKVKVKTKNGEEYeeIFDFLVLAPG 113 4555555553599*******************986569*******98 PP == domain 3 score: -0.1 bits; conditional E-value: 1.1 NAD_binding_9 2 ivGaGprGlavlerLlar 19 ++G+G G+ ++e+L + 23726_FusoPortal_Gene_655 155 VIGGGYVGIETAENLKHL 172 8************99655 PP == domain 4 score: 3.2 bits; conditional E-value: 0.1 NAD_binding_9 119 vhraevvdlekradgqavlladgaslaadaVvLAlG 154 +++++vv++++++++ + l++g+ ++ d ++L +G 23726_FusoPortal_Gene_655 209 MISEKVVEFQEDGNEIIIKLESGKIVTTDMLILSIG 244 46899****************************999 PP >> UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 0.2 1.5e-05 0.01 2 52 .. 152 202 .. 151 244 .. 0.88 2 ? 0.3 0.0 0.58 4e+02 36 94 .. 532 588 .. 528 599 .. 0.80 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 1.5e-05 EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-SS--TTHH CS UDPG_MGDP_dh_N 2 kisviGlGYvGlvtaavlaeighevigvDideekvdklnsgkipiyepgLe 52 k +viG GYvG+ ta l ++g++ +++ + + + s+ ++i e +L 23726_FusoPortal_Gene_655 152 KATVIGGGYVGIETAENLKHLGIDTTLIEAAPHILAPFDSEISNILEYELV 202 679*****************************************9998874 PP == domain 2 score: 0.3 bits; conditional E-value: 0.58 HHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B-TTTTC CS UDPG_MGDP_dh_N 36 vdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaVgTPskkkgka 94 v++l +g i+i+e++L ++ ++ s++ + +v+k+ e d+ ++ + P k +++ 23726_FusoPortal_Gene_655 532 VKNL-AGGIKIEEKELIKMQEETF-SNKENSDYNVDKEDEYLDLSGLSCPGPLVKIKEK 588 5555.46699*********99999.7888888999999999999999999998774444 PP >> FAD_binding_3 FAD binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.7 0.1 0.16 1.1e+02 3 22 .. 3 22 .. 2 31 .. 0.92 2 ? -2.4 0.0 2.9 2e+03 123 155 .. 70 102 .. 58 120 .. 0.76 3 ! 11.2 0.1 0.00021 0.15 5 32 .. 154 181 .. 151 187 .. 0.92 Alignments for each domain: == domain 1 score: 1.7 bits; conditional E-value: 0.16 EEEEE--SHHHHHHHHHHHH CS FAD_binding_3 3 dVlIVGaGpaGlmlallLse 22 +VlIVG+ G+++a+ L++ 23726_FusoPortal_Gene_655 3 KVLIVGGVAGGASTATRLRR 22 6**************99986 PP == domain 2 score: -2.4 bits; conditional E-value: 2.9 HHTEEETSSEEEECCEECCCCCCCEEEECCTTE CS FAD_binding_3 123 erglqvrfktevlsleqdeegvtavvrdketge 155 + l+vr + ev++++ +++v+ + ++ e+ e 23726_FusoPortal_Gene_655 70 RFNLDVRVNSEVVGVNGKDKKVKVKTKNGEEYE 102 445899999****99999999998877665433 PP == domain 3 score: 11.2 bits; conditional E-value: 0.00021 EEE--SHHHHHHHHHHHHTTHHEEEEES CS FAD_binding_3 5 lIVGaGpaGlmlallLseaGvrvvlvek 32 ++G+G +G+ +a L++ G++++l+e 23726_FusoPortal_Gene_655 154 TVIGGGYVGIETAENLKHLGIDTTLIEA 181 69************************97 PP >> AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.1 3.2 2.2e+03 30 46 .. 3 18 .. 2 30 .. 0.59 2 ! 14.2 0.0 2.7e-05 0.019 27 73 .. 149 195 .. 132 242 .. 0.79 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 3.2 EEEEESTSHHHHHHHHH CS AlaDh_PNT_C 30 kvlviGgGvaGlqAiat 46 kvl++G GvaG ++ at 23726_FusoPortal_Gene_655 3 KVLIVG-GVAGGASTAT 18 688887.6777554433 PP == domain 2 score: 14.2 bits; conditional E-value: 2.7e-05 ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTC CS AlaDh_PNT_C 27 epakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgak 73 + k +viGgG +G++ +++ k lg ++t+++ p+ l ++s ++ 23726_FusoPortal_Gene_655 149 NVKKATVIGGGYVGIETAENLKHLGIDTTLIEAAPHILAPFDSEISN 195 456889***************************99999888884444 PP >> DUF2271 Predicted periplasmic protein (DUF2271) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.5 0.1 2.8e-05 0.019 33 87 .. 595 651 .. 588 656 .. 0.84 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 2.8e-05 DUF2271 33 vktLavwgegekwlkdlrqWwrksgrklke..pidgvsgaTrapGkyklkvdekddk 87 k+L v ++ +++d++ W + ++++l + + dg++ aT ++G+ + +v + +++ 23726_FusoPortal_Gene_655 595 SKKLKVKVSDPGFYNDIQAWSKVTKNSLLSldKKDGLTYATLQKGQASKVVVKEQEN 651 57889999999***********9996654458**************99888777654 PP >> Arg_repressor Arginine repressor, DNA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.1 7.8 5.5e+03 43 60 .. 133 150 .. 131 153 .. 0.81 2 ? 14.9 0.1 2.3e-05 0.016 8 45 .. 740 777 .. 739 784 .. 0.92 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 7.8 HHHHHHT-EEEETTSTTE CS Arg_repressor 43 RdLkelglvkvraengey 60 R ++++ +k +++n+++ 23726_FusoPortal_Gene_655 133 RNINDMDKIKAEIKNHNV 150 788899999999888876 PP == domain 2 score: 14.9 bits; conditional E-value: 2.3e-05 HHHHHHHHHS---SHHHHHHHHHHTT----HHHHHHHH CS Arg_repressor 8 klikkiikeekissQkelvelLkeeGidvtQatvSRdL 45 k i+ ++k+++i s +el+++ k+ Gi++t t+S d+ 23726_FusoPortal_Gene_655 740 KMIRSVMKKKNIMSLEELMKKAKDSGINITACTMSMDV 777 689********************************886 PP >> NAD_binding_7 Putative NAD(P)-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 0.0 0.62 4.3e+02 8 35 .. 2 29 .. 1 105 [. 0.79 2 ? 10.7 0.0 0.00075 0.52 8 41 .. 151 187 .. 146 268 .. 0.74 3 ? 0.5 0.4 1.1 7.5e+02 26 58 .. 525 557 .. 518 680 .. 0.64 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 0.62 NAD_binding_7 8 kkvlvvGgGevAarkvrklleagakvtv 35 kkvl+vGg +a+ + +l + + ++ + 23726_FusoPortal_Gene_655 2 KKVLIVGGVAGGASTATRLRRLDENLEI 29 79*****866666665555554444433 PP == domain 2 score: 10.7 bits; conditional E-value: 0.00075 NAD_binding_7 8 kkvlvvGgGevAarkvrklleagakvtvvapev...k 41 kk v+GgG v+ + +++l g + t++ + + 23726_FusoPortal_Gene_655 151 KKATVIGGGYVGIETAENLKHLGIDTTLIEAAPhilA 187 8899************************855532241 PP == domain 3 score: 0.5 bits; conditional E-value: 1.1 NAD_binding_7 26 lleagakvtvvapevkeeleelvklaeeelekd 58 l ++g kv+ +a +k e +el+k++ee+++++ 23726_FusoPortal_Gene_655 525 LTQKGYKVKNLAGGIKIEEKELIKMQEETFSNK 557 556666777777776666667777777766322 PP >> K_oxygenase L-lysine 6-monooxygenase (NADPH-requiring) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 6.6e-05 0.046 107 211 .. 70 171 .. 66 209 .. 0.74 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 6.6e-05 K_oxygenase 107 eldeqvrfgeeveevepdeeeeeelltveskdaegeeeellarnlvlgvGtepaiPevleklegkervvHsseylerkee.... 186 +++ vr ++ev v+ ++++ v++k+++gee e lvl+ G +p+ P++ + +e+ ++++ ++ + 23726_FusoPortal_Gene_655 70 RFNLDVRVNSEVVGVNGKDKK------VKVKTKNGEEYEEIFDFLVLAPGAKPIFPAI-KGIEN-KKIFTLRNINDMD-Kikae 144 566567788888888887764......555558999999*****************86.55664.6666554443322.12334 PP K_oxygenase 187 ..llakkriaVvGsGqSaaeifedllr 211 +++ k+ +V+G+G + e +e+l + 23726_FusoPortal_Gene_655 145 ikNHNVKKATVIGGGYVGIETAENLKH 171 658899999**********99999865 PP >> Lycopene_cycl Lycopene cyclase protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 0.0 0.054 37 2 40 .. 4 42 .. 3 44 .. 0.93 2 ? 7.5 0.0 0.0024 1.7 4 39 .. 155 188 .. 153 245 .. 0.94 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 0.054 Lycopene_cycl 2 vvviGaGpAglslAarlteakpglkvvlieaspsllfpn 40 v+++G+ + g s A rl + +l++v+ e ++ + f+n 23726_FusoPortal_Gene_655 4 VLIVGGVAGGASTATRLRRLDENLEIVIFEKGEYVSFAN 42 799**9999***********************9998887 PP == domain 2 score: 7.5 bits; conditional E-value: 0.0024 Lycopene_cycl 4 viGaGpAglslAarlteakpglkvvlieaspsllfp 39 viG+G g+ A++l ++ g+ +liea+p++l p 23726_FusoPortal_Gene_655 155 VIGGGYVGIETAENL--KHLGIDTTLIEAAPHILAP 188 9**************..**************99876 PP >> GIDA Glucose inhibited division protein A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.2 0.00017 0.12 2 29 .. 153 182 .. 152 204 .. 0.83 2 ? -1.8 0.0 1.7 1.2e+03 112 151 .. 643 683 .. 632 758 .. 0.67 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.00017 EEEE-SSHHHHHHHHHHHHTT--EEEE..E CS GIDA 2 viViGgGhAGceAAlaaarlGakvlLi..t 29 +ViGgG G+e A +++ lG++++Li + 23726_FusoPortal_Gene_655 153 ATVIGGGYVGIETAENLKHLGIDTTLIeaA 182 58************************9441 PP == domain 2 score: -1.8 bits; conditional E-value: 1.7 EEEES-EEEEEECT.TEEEEEEETTS-EEEECEEEE--TT- CS GIDA 112 eiieeeveelivee.kkvkgvvtedgetikakavviatGtf 151 +++ +e e++i+e+ ++++ vv + + a++ia G+ 23726_FusoPortal_Gene_655 643 KVVVKEQENVIIEDnSNMTMVVFSGDLDKAIAAFIIANGAL 683 55556666666665244555666665555666888888882 PP >> Amino_oxidase Flavin containing amine oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 0.0 0.0007 0.49 212 259 .. 63 111 .. 49 117 .. 0.88 2 ? -0.5 0.0 0.74 5.2e+02 3 26 .. 162 185 .. 162 185 .. 0.90 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.0007 HHHHHHHTTTTEEEETSEEEEEEEEETTCEEEEETTSTEE..EESEEEE- CS Amino_oxidase 212 lpealaeelrgldirlntrVkeikregdgvtvtledgevv..eaDaVvvT 259 pe+l + + +ld+r+n++V ++ + +v+v++++ge++ +D v++ 23726_FusoPortal_Gene_655 63 TPESLKA-RFNLDVRVNSEVVGVNGKDKKVKVKTKNGEEYeeIFDFLVLA 111 5777777.8899*************9999***********8878888877 PP == domain 2 score: -0.5 bits; conditional E-value: 0.74 HHHHHHHHHHTTEEEEEEESSSSS CS Amino_oxidase 3 GLaaArqLlsaGfdVtvlEardrv 26 G+ +A L++ G d+t++Ea +++ 23726_FusoPortal_Gene_655 162 GIETAENLKHLGIDTTLIEAAPHI 185 7779****************8875 PP >> DUF2612 Protein of unknown function (DUF2612) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.1 0.00022 0.15 129 172 .. 641 683 .. 632 688 .. 0.80 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 0.00022 DUF2612 129 ilrslfadggrvfvlDngdmtmsvyvfefqltavelaiiensdl 172 + + +++++++v+++Dn +mtm + ++ +a+ ++ii+n+ l 23726_FusoPortal_Gene_655 641 ASKVVVKEQENVIIEDNSNMTMV-VFSGDLDKAIAAFIIANGAL 683 556677789*************9.66666677788888888776 PP >> SinI Anti-repressor SinI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 0.1 0.003 2.1 7 17 .. 756 766 .. 755 768 .. 0.89 2 ? 1.2 0.1 0.43 3e+02 15 21 .. 778 784 .. 777 785 .. 0.94 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.003 HHHHHHHHTT- CS SinI 7 eLikEAkesGl 17 eL+k+Ak+sG+ 23726_FusoPortal_Gene_655 756 ELMKKAKDSGI 766 9*********9 PP == domain 2 score: 1.2 bits; conditional E-value: 0.43 TT--HHH CS SinI 15 sGlskeE 21 +G+skeE 23726_FusoPortal_Gene_655 778 MGISKEE 784 9*****9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (811 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 898 (0.0537338); expected 334.2 (0.02) Passed bias filter: 529 (0.0316539); expected 334.2 (0.02) Passed Vit filter: 75 (0.00448779); expected 16.7 (0.001) Passed Fwd filter: 26 (0.00155577); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 24 [number of targets reported over threshold] # CPU time: 0.56u 0.34s 00:00:00.90 Elapsed: 00:00:00.44 # Mc/sec: 5358.19 // [ok]