# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_660.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_660 [L=528] Description: # 751068 # 752651 # 1 # ID=1_660;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.295 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-39 135.4 3.4 2.2e-22 80.0 0.1 2.6 3 ABC_tran ABC transporter 3.1e-07 30.4 4.0 0.0012 18.7 0.4 3.2 3 AAA_21 AAA domain, putative AbiEii toxin, Type IV TA 0.00051 19.4 2.7 0.42 9.9 0.1 3.2 2 SMC_N RecF/RecN/SMC N terminal domain 0.0028 17.8 1.4 0.88 9.7 0.0 2.8 3 AAA_22 AAA domain ------ inclusion threshold ------ 0.013 15.1 0.1 0.013 15.1 0.1 2.1 2 AAA_29 P-loop containing region of AAA domain 0.014 15.3 4.6 0.57 10.2 0.2 3.2 4 MMR_HSR1 50S ribosome-binding GTPase 0.026 14.4 0.2 0.026 14.4 0.2 2.6 2 RsgA_GTPase RsgA GTPase 0.028 14.0 0.8 0.028 14.0 0.8 2.9 3 AAA_15 AAA ATPase domain 0.041 14.3 11.7 0.011 16.2 7.2 2.3 2 AAA_23 AAA domain 0.07 12.6 0.3 4.1 6.8 0.1 2.3 2 AAA_25 AAA domain 0.071 12.0 5.6 0.15 11.0 0.2 2.6 2 NB-ARC NB-ARC domain 0.17 12.1 0.2 10 6.4 0.1 2.8 3 SbcCD_C Putative exonuclease SbcCD, C subunit 0.22 11.8 7.0 1.9 8.8 0.6 3.5 4 AAA ATPase family associated with various cellula 0.24 11.5 3.3 0.76 9.9 0.5 2.3 2 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/C 0.26 11.7 1.7 4.7 7.7 0.1 2.7 2 NPV_P10 Nucleopolyhedrovirus P10 protein 0.46 10.8 1.7 4.2 7.6 0.0 2.5 2 AAA_16 AAA ATPase domain 3.2 7.3 6.1 1.5 8.4 0.0 2.6 3 AAA_30 AAA domain Domain annotation for each model (and alignments): >> ABC_tran ABC transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.0 0.1 2.2e-25 2.2e-22 1 137 [] 21 187 .. 21 187 .. 0.93 2 ? -2.2 0.0 5.1 5e+03 54 87 .. 202 249 .. 191 276 .. 0.61 3 ! 55.8 0.1 6.2e-18 6.1e-15 1 136 [. 291 452 .. 291 453 .. 0.90 Alignments for each domain: == domain 1 score: 80.0 bits; conditional E-value: 2.2e-25 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.....SEEEEEETTEEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF ABC_tran 1 lknvslklkegekvaivGenGaGKStLlkllagllkp.....teGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvre 78 lk+++l+lkege++++vGenGaGKStL+k++ g++ +G+i +dgk+++ + l++ ig+++qe +l p+ +v e 23726_FusoPortal_Gene_660 21 LKDINLELKEGEILGLVGENGAGKSTLMKIIFGMEVIretggYNGKIFFDGKEVNFlSPFDALNAGIGMVHQEFSLIPGFKVSE 104 79*******************************9877788889*************99************************** PP H...........................HHHTCHHHHHHCSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT.SSEEEEES CS x...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF ABC_tran 79 n...........................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkk.pkllllDE 134 n + ++++++a+ klg + + ++ + +++ kq ++ar + ++ kll+lDE 23726_FusoPortal_Gene_660 105 NivlnrestknnlmthffgegiskidqkDNTKRAQEAILKLGVNLTGQEQI----NEMAVAYKQFTEIAREIEREsTKLLVLDE 184 **********************99987666667999999999999888888....***************99865269****** PP TTT CS xxx RF ABC_tran 135 pta 137 pta 23726_FusoPortal_Gene_660 185 PTA 187 *97 PP == domain 2 score: -2.2 bits; conditional E-value: 5.1 HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTCHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxx RF ABC_tran 54 leslrkeigvlpqepqlfpeltvren..............esdeeiek 87 ++ ++k i +++ +++l++ +tv ++ +++ ++++ 23726_FusoPortal_Gene_660 202 KKLANKGITIIFITHRLNEIMTVSDKvtvlrdgqlintvpTKSTNVNE 249 456677777777777777777777776666555555555533333333 PP == domain 3 score: 55.8 bits; conditional E-value: 6.2e-18 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTEEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx. RF ABC_tran 1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren. 79 lk ++l++k+ge++++ G G GK +++ ++gl k t+G+i+++g+dl +++ l+k i +++++ l + ++++n 23726_FusoPortal_Gene_660 291 LKGLDLDIKKGEILGLGGMAGQGKIAVANGVMGLFK-TKGNIKYKGEDLVLnKPTYPLEKGIFFVSEDrkgVGLLLDESIERNi 373 7899*******************************8.9*******999887699999***********988777777779999* PP .........................HHHTCHHHHHHCSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS .........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ABC_tran 80 .........................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136 + +++++k+++kl++k + ++ + ++LSgG +q+v++a+a+ +p+ll++ Ept 23726_FusoPortal_Gene_660 374 afpameikglflkkylglinviddkAVTDNAKKYIEKLEIKSMSEKQ---KVAELSGGNQQKVCVAKAFTMEPDLLFVSEPT 452 ********************987766666799999999998854433...46*****************************9 PP >> AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.4 1.2e-06 0.0012 2 41 .. 34 66 .. 33 151 .. 0.70 2 ! 7.3 0.3 0.0034 3.3 257 298 .. 176 217 .. 163 222 .. 0.89 3 ? 4.2 0.0 0.03 30 189 296 .. 412 482 .. 346 482 .. 0.73 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 1.2e-06 AAA_21 2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsgggg 41 +l+G Ng+GKS+L++++ ++ e ++++ + 23726_FusoPortal_Gene_660 34 LGLVGENGAGKSTLMKIIFGM---EVIRETGGYNG----K 66 579***************888...33333333333....2 PP == domain 2 score: 7.3 bits; conditional E-value: 0.0034 AAA_21 257 kgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298 +++ll++DEp + L lle +k+l+++g+ +i+ TH 23726_FusoPortal_Gene_660 176 STKLLVLDEPTAVLTEDEAQILLETMKKLANKGITIIFITHR 217 4489999999999999999**********************5 PP == domain 3 score: 4.2 bits; conditional E-value: 0.03 AAA_21 189 vrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP 272 + ++ + ++elS G ++ +++ a+ + +ll++ Ep g++ 23726_FusoPortal_Gene_660 412 EIKSMSEKQK-----------------------------------VAELSGGNQQKVCVAKAFTMEP---DLLFVSEPTRGIDV 457 4444444333...................................4556999999999999999988...9************* PP AAA_21 273 kllrrllellkelsr.ngaQviltT 296 + +le lke +r +++ +++t+ 23726_FusoPortal_Gene_660 458 GAKQLVLETLKEYNReRNTTIVVTS 482 **********777776999999997 PP >> SMC_N RecF/RecN/SMC N terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.9 0.1 0.00043 0.42 24 46 .. 31 52 .. 5 60 .. 0.66 2 ! 6.3 0.2 0.0055 5.4 157 211 .. 175 230 .. 151 239 .. 0.83 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00043 SSEEEEEESTTSSHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 24 ksftaivGpNGSGKsnlldAilF 46 ++ +vG+NG+GKs l+ i F 23726_FusoPortal_Gene_660 31 GEILGLVGENGAGKSTLMKII-F 52 346689***********9977.4 PP == domain 2 score: 6.3 bits; conditional E-value: 0.0055 S--SEEEECSTTTTS-HHHHHHHHHHHHHHCCT.SEEEEE-SSHHHHTT-SCEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF SMC_N 157 kpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgv 211 + + l +lDe a L e + +++ e +k+ ++ +i i++r + + ++ v v 23726_FusoPortal_Gene_660 175 ESTKLLVLDEPTAVLTEDEAQILLETMKKLANKgITIIFITHRLNEIMTVSDKVTV 230 556799**********************98877689999***97766655544444 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.7 0.0 0.0009 0.88 5 28 .. 31 54 .. 26 79 .. 0.83 2 ? 6.2 0.2 0.011 11 80 128 .. 166 214 .. 127 222 .. 0.72 3 ? -2.3 0.0 4.6 4.5e+03 57 70 .. 463 476 .. 414 503 .. 0.56 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.0009 AAA_22 5 agilvvtGesGtGKTtllrrlleq 28 il ++Ge G+GK+tl++ ++ 23726_FusoPortal_Gene_660 31 GEILGLVGENGAGKSTLMKIIFGM 54 567889************977655 PP == domain 2 score: 6.2 bits; conditional E-value: 0.011 AAA_22 80 ealeqalraravielliiDEaqh.lr.s..eealeeLrsllnlsrkgvqliLv 128 + +++ +++ ++ +ll++DE l+ + +le+ ++l+n kg+++i++ 23726_FusoPortal_Gene_660 166 TEIAREIEREST-KLLVLDEPTAvLTeDeaQILLETMKKLAN---KGITIIFI 214 345555555555.99999999996645145667888899999...99999887 PP == domain 3 score: -2.3 bits; conditional E-value: 4.6 AAA_22 57 lrellralglelka 70 e l+++++e+++ 23726_FusoPortal_Gene_660 463 VLETLKEYNRERNT 476 33333333332222 PP >> AAA_29 P-loop containing region of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 0.1 1.3e-05 0.013 17 39 .. 26 48 .. 19 52 .. 0.80 2 ? -2.7 0.3 4.9 4.9e+03 17 38 .. 296 317 .. 291 333 .. 0.70 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 1.3e-05 AAA_29 17 ieldlkgvtlltGpsGsGKSTll 39 +el++ ++ l+G++G+GKSTl+ 23726_FusoPortal_Gene_660 26 LELKEGEILGLVGENGAGKSTLM 48 4555445888************8 PP == domain 2 score: -2.7 bits; conditional E-value: 4.9 AAA_29 17 ieldlkgvtlltGpsGsGKSTl 38 +++++ ++ l G G GK ++ 23726_FusoPortal_Gene_660 296 LDIKKGEILGLGGMAGQGKIAV 317 5666444778899999999665 PP >> MMR_HSR1 50S ribosome-binding GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 0.2 0.00058 0.57 3 24 .. 35 56 .. 33 66 .. 0.81 2 ? -2.5 0.0 5.1 5e+03 74 86 .. 173 189 .. 145 219 .. 0.49 3 ? 5.6 0.0 0.015 15 12 56 .. 243 290 .. 243 344 .. 0.80 4 ? -2.8 0.0 6.3 6.1e+03 77 99 .. 389 409 .. 360 425 .. 0.58 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.00058 EEEESTTSSHHHHHHHHHTSTE CS MMR_HSR1 3 aivGrpNvGKStLinaltgera 24 ++vG +GKStL++ ++g ++ 23726_FusoPortal_Gene_660 35 GLVGENGAGKSTLMKIIFGMEV 56 89*************9998643 PP == domain 2 score: -2.5 bits; conditional E-value: 5.1 HHTSEEEEEEET....T CS MMR_HSR1 74 eeadlillvvda....v 86 e+ + llv+d + 23726_FusoPortal_Gene_660 173 ERESTKLLVLDEptavL 189 33344455555322221 PP == domain 3 score: 5.6 bits; conditional E-value: 0.015 HHHHHHHHHT....STEEECSSTTSSSSCEEEEEEETTEEEEEEECGG.T CS MMR_HSR1 12 KStLinaltg....eraivsdkpgtTrdinegrvklkgkeielvDtpG.l 56 KSt +n +t+ +++ +s++ T + n +++ + + +vD+pG + 23726_FusoPortal_Gene_660 243 KSTNVNEITEwmigRKVSTSSEGKNTDNSNVENLM--EIKDLWVDMPGeM 290 9999****965444799999999******999988..55559******42 PP == domain 4 score: -2.8 bits; conditional E-value: 6.3 SEEEEEEETTTTCSHHHHHHHHH CS MMR_HSR1 77 dlillvvdavkeklkpldeelee 99 ++ v+d k+ ++++ ++ e 23726_FusoPortal_Gene_660 389 LGLINVIDD-KA-VTDNAKKYIE 409 456777772.33.3333222222 PP >> RsgA_GTPase RsgA GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.2 2.6e-05 0.026 83 123 .. 14 55 .. 4 67 .. 0.80 2 ? -0.6 0.1 1 9.8e+02 112 160 .. 243 288 .. 171 297 .. 0.60 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 2.6e-05 -TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT- CS RsgA_GTPase 83 saktkegleelkellkd.ktsvlvGqSGvGKStLinallpel 123 s +++ l++++ +lk+ ++ lvG+ G+GKStL++ + + + 23726_FusoPortal_Gene_660 14 SFGDNTVLKDINLELKEgEILGLVGENGAGKSTLMKIIFGME 55 5566778899999999989****************9998743 PP == domain 2 score: -0.6 bits; conditional E-value: 1 HHHHHHHHCTT-----S--------------SE..EEEEETTTEEEESS-S CS RsgA_GTPase 112 KStLinallpelelktgevseklgrGkhTTtav..ellelaegglliDtPG 160 KSt +n++++ + ++vs+ +++Gk+T + +l+e++ l +D PG 23726_FusoPortal_Gene_660 243 KSTNVNEITEW--MIGRKVST-SSEGKNTDNSNveNLMEIK--DLWVDMPG 288 66666666654..22233333.4667777554311344444..55566666 PP >> AAA_15 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.8 2.9e-05 0.028 14 43 .. 21 51 .. 20 81 .. 0.87 2 ? 5.6 3.2 0.0097 9.6 304 380 .. 141 216 .. 100 218 .. 0.77 3 ? -0.7 0.1 0.82 8e+02 77 118 .. 377 416 .. 331 456 .. 0.70 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 2.9e-05 AAA_15 14 lkdteidldee.ltvliGkNnsGKSsileal 43 lkd+ ++l+e + l+G+N++GKS++++++ 23726_FusoPortal_Gene_660 21 LKDINLELKEGeILGLVGENGAGKSTLMKII 51 789999999988999**************99 PP == domain 2 score: 5.6 bits; conditional E-value: 0.0097 AAA_15 304 dgeelplnynGsGvqrlillillileaekkdeneekinilaiEEPEahlHPqlqkvlikllkelannnktQviitTH 380 +l +n G+ + + + ++++++ + ++ ++e++ +l+++EP a l + ++l +++k+lan++ +i+ TH 23726_FusoPortal_Gene_660 141 AILKLGVNLTGQEQINEMAVAYKQFTEIAREIERESTKLLVLDEPTAVLTEDEAQILLETMKKLANKGI-TIIFITH 216 445677777777777778888888877777778899********************************8.7777777 PP == domain 3 score: -0.7 bits; conditional E-value: 0.82 AAA_15 77 eikIdvefliefeyledkkkilklkskkkskeyestlkskgk 118 ++I+ f ++yl + i++++ +++k+y++ l+ k 23726_FusoPortal_Gene_660 377 AMEIKGLF--LKKYLGLINVIDDKAVTDNAKKYIEKLEIKSM 416 45555555..55555555555555555444444443333322 PP >> AAA_23 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 16.2 7.2 1.1e-05 0.011 2 136 .. 6 169 .. 6 281 .. 0.70 2 ? -0.5 0.1 1.4 1.4e+03 155 171 .. 404 421 .. 328 500 .. 0.60 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 1.1e-05 AAA_23 2 Lkienf.rsf......rdqeidF...skgltlItGpNGaGKTTildAikla.Lygetprlsrks..................gr 56 Lkien+ +sf +d i++ + + ++G+NGaGK+T++ i + et++ ++k g 23726_FusoPortal_Gene_660 6 LKIENLsKSFgdntvlKD--INLelkEGEILGLVGENGAGKSTLMKIIFGMeVIRETGGYNGKIffdgkevnflspfdalnaGI 87 677887677854433344..444557678999****************998457777777777799999999999999999988 PP AAA_23 57 gfeksdveiesegkvkayveltfenkdgry.trsiererekskkkgkttkkaklellei...deleqfisellgskkiilnlil 136 g++++++++ + kv++ + l+ e++++ t ++ e + +++++tk a++ +l+ + +++i+e + + +++++ i+ 23726_FusoPortal_Gene_660 88 GMVHQEFSLIPGFKVSENIVLNRESTKNNLmTHFF-GEGISKIDQKDNTKRAQEAILKLgvnLTGQEQINE-MAVAYKQFTEIA 169 99999999999888888888888887776652222.23333333444444444444444444666777775.555666664443 PP == domain 2 score: -0.5 bits; conditional E-value: 1.4 AAA_23 155 leelekeleeled.ekkl 171 ++++++le ++ ek++ 23726_FusoPortal_Gene_660 404 AKKYIEKLEIKSMsEKQK 421 222222222222111111 PP >> AAA_25 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.4 0.0 0.047 46 31 49 .. 29 47 .. 22 49 .. 0.89 2 ? 6.8 0.1 0.0042 4.1 119 188 .. 154 216 .. 128 218 .. 0.77 Alignments for each domain: == domain 1 score: 3.4 bits; conditional E-value: 0.047 AAA_25 31 pagelallaGapgtGKttl 49 +ge+ l+G g+GK+tl 23726_FusoPortal_Gene_660 29 KEGEILGLVGENGAGKSTL 47 6889999***********9 PP == domain 2 score: 6.8 bits; conditional E-value: 0.0042 AAA_25 119 kdrggtlltadvdaleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188 ++++++++ ++ +++++ie+ e +l+v+D +++l de + l+e ++++ +++g++++++ H 23726_FusoPortal_Gene_660 154 QINEMAVAYKQFTEIAREIER-ESTKLLVLDEPTAVLTEDEA-----QILLETMKKL-ANKGITIIFITH 216 4566666777889********.99***********9998876.....7788888887.477777777777 PP >> NB-ARC NB-ARC domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.2 0.00015 0.15 17 41 .. 29 53 .. 18 69 .. 0.79 2 ? 2.4 1.0 0.062 61 17 40 .. 299 322 .. 286 334 .. 0.80 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.00015 SSSEEEEEEESTTSSHHHHHHHHTC CS NB-ARC 17 delgivalvGmgGvGKttlakqilk 41 +e +i++lvG G GK+tl+k i+ 23726_FusoPortal_Gene_660 29 KEGEILGLVGENGAGKSTLMKIIFG 53 67789****************9984 PP == domain 2 score: 2.4 bits; conditional E-value: 0.062 SSSEEEEEEESTTSSHHHHHHHHT CS NB-ARC 17 delgivalvGmgGvGKttlakqil 40 ++ +i++l Gm+G GK +a+ ++ 23726_FusoPortal_Gene_660 299 KKGEILGLGGMAGQGKIAVANGVM 322 55679***********99988775 PP >> SbcCD_C Putative exonuclease SbcCD, C subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 3.1 3e+03 60 79 .. 113 132 .. 105 142 .. 0.75 2 ? 6.4 0.1 0.01 10 49 89 .. 161 202 .. 153 203 .. 0.81 3 ? 2.1 0.0 0.21 2.1e+02 26 41 .. 418 433 .. 401 441 .. 0.79 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 3.1 SbcCD_C 60 repalrlvfLDEAFsklDee 79 ++++l + f+ E+ sk+D++ 23726_FusoPortal_Gene_660 113 TKNNLMTHFFGEGISKIDQK 132 57778889999*******86 PP == domain 2 score: 6.4 bits; conditional E-value: 0.01 SbcCD_C 49 alaalyssaeg.repalrlvfLDEAFsklDeesiatllelle 89 a + + a++ ++++ +l++LDE + l e+ ++ lle+++ 23726_FusoPortal_Gene_660 161 AYKQFTEIAREiERESTKLLVLDEPTAVLTEDEAQILLETMK 202 4455555556678999******************99999987 PP == domain 3 score: 2.1 bits; conditional E-value: 0.21 SbcCD_C 26 lsrssgtlSGGekqfl 41 ++++++lSGG +q++ 23726_FusoPortal_Gene_660 418 EKQKVAELSGGNQQKV 433 478999*******875 PP >> AAA ATPase family associated with various cellular activities (AAA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 0.0 0.04 39 3 20 .. 36 53 .. 34 85 .. 0.89 2 ? 8.8 0.6 0.0019 1.9 30 115 .. 150 221 .. 115 226 .. 0.82 3 ? -1.3 0.0 2.6 2.6e+03 5 44 .. 308 359 .. 305 375 .. 0.72 4 ? -1.2 0.0 2.4 2.3e+03 87 115 .. 461 488 .. 398 497 .. 0.54 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.04 EESSTTSSHHHHHHHHHH CS AAA 3 lyGppGtGKTllakavak 20 l+G G GK++l+k + 23726_FusoPortal_Gene_660 36 LVGENGAGKSTLMKIIFG 53 89************9975 PP == domain 2 score: 8.8 bits; conditional E-value: 0.0019 ETTTCCSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHCHHHSSCSTHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGG CS AAA 30 sgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpd 113 g e ++ + + k++ e+ +e+++++ ++ l++DE a+ +++ ++ Ll+ ++++ +k +++i +t+r + 23726_FusoPortal_Gene_660 150 TGQEQIN-EMAVAYKQFTEIAREIERES-TKLLVLDEPTAVLTED----------EAQILLETMKKLANK--GITIIFITHRLN 219 4444452.35566778888888888887.8***********9999..........6899********995..69********98 PP GS CS AAA 114 kl 115 ++ 23726_FusoPortal_Gene_660 220 EI 221 87 PP == domain 3 score: -1.3 bits; conditional E-value: 2.6 SSTTSSHHHHHHHHHHHHTHEE.EEEETTTCC.SS..........STTHHHH CS AAA 5 GppGtGKTllakavakelgvef.leisgsell.sk..........yvgesek 44 G G GK ++a+ v+ ++++ ++ +g +l+ +k +v+e k 23726_FusoPortal_Gene_660 308 GMAGQGKIAVANGVMGLFKTKGnIKYKGEDLVlNKptyplekgifFVSEDRK 359 88999******99999998664488888888866666666666655555555 PP == domain 4 score: -1.2 bits; conditional E-value: 2.4 HHHHHHHHHTTTSSSTEEEEEEESSGGGS CS AAA 87 nqLlteldgvkkkeskvivigatnrpdkl 115 + l+ l+++++ e+++++++++ ++++l 23726_FusoPortal_Gene_660 461 QLVLETLKEYNR-ERNTTIVVTSSEIEEL 488 233444444444.3446666666665555 PP >> CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 0.5 0.00077 0.76 69 124 .. 149 202 .. 110 235 .. 0.68 2 ? 1.9 0.1 0.22 2.1e+02 95 153 .. 441 498 .. 384 504 .. 0.67 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00077 CobA_CobO_BtuR 69 meeeekeedaaaakealekakealaseeydlvvlDEinyalklglldeeevlellk 124 + +e+ ++ a a ++++++++++++e+ +l+vlDE +++l+ + + +le++k 23726_FusoPortal_Gene_660 149 LTGQEQINEMAVAYKQFTEIAREIERESTKLLVLDEPTAVLTEDE--AQILLETMK 202 4566777888899999999******************99987763..334455555 PP == domain 2 score: 1.9 bits; conditional E-value: 0.22 CobA_CobO_BtuR 95 eeydlvvlDEinyalklglldeeevlellk..kkpeklelvlTGrnapeelleaADlvtem 153 e dl+ + E + +++g +++ vle+lk ++++++ +v+T + eel +++D + + 23726_FusoPortal_Gene_660 441 MEPDLLFVSEPTRGIDVG--AKQLVLETLKeyNRERNTTIVVTSSE-IEELRNICDRIAII 498 356777777777666666..5788999**97779999999999755.56777777776655 PP >> NPV_P10 Nucleopolyhedrovirus P10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.4 0.2 0.2 2e+02 24 56 .. 152 184 .. 141 204 .. 0.88 2 ? 7.7 0.1 0.0048 4.7 10 42 .. 218 252 .. 213 279 .. 0.87 Alignments for each domain: == domain 1 score: 2.4 bits; conditional E-value: 0.2 NPV_P10 24 qqqvddvqenlpdvtelnekLdaqsaqLaelet 56 q+q+++++ +++te+ ++++ s++L l++ 23726_FusoPortal_Gene_660 152 QEQINEMAVAYKQFTEIAREIERESTKLLVLDE 184 8999999999*************9999988876 PP == domain 2 score: 7.7 bits; conditional E-value: 0.0048 NPV_P10 10 radikavddkVdalq..qqvddvqenlpdvtelne 42 +++i v+dkV++l q ++ v +++ +v+e++e 23726_FusoPortal_Gene_660 218 LNEIMTVSDKVTVLRdgQLINTVPTKSTNVNEITE 252 68999*********7334579**********9997 PP >> AAA_16 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 0.0 0.0042 4.2 23 45 .. 30 52 .. 20 85 .. 0.82 2 ? 1.8 0.0 0.27 2.6e+02 55 105 .. 148 201 .. 121 227 .. 0.56 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.0042 AAA_16 23 rpelvllsGesGvGKsslvrell 45 ++e++ l+Ge G GKs+l++ ++ 23726_FusoPortal_Gene_660 30 EGEILGLVGENGAGKSTLMKIIF 52 458899************98666 PP == domain 2 score: 1.8 bits; conditional E-value: 0.27 AAA_16 55 flrgkcdqlesaipy...salaqalareellrqlldeaesaeleawrekleeal 105 l+g+ + +e+a++y +a+ ++re+ +lde+++ + e+ ++ l+e++ 23726_FusoPortal_Gene_660 148 NLTGQEQINEMAVAYkqfTEIAREIERESTKLLVLDEPTAVLTEDEAQILLETM 201 377777777777777553335555545333333333333333333333333333 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 0.0 0.0016 1.5 19 46 .. 32 61 .. 25 88 .. 0.79 2 ? 1.5 0.1 0.19 1.9e+02 82 114 .. 170 203 .. 133 217 .. 0.60 3 ? -3.3 1.1 5.8 5.7e+03 22 45 .. 305 328 .. 299 335 .. 0.75 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.0016 AAA_30 19 rvavltGpAGtGKttalkal..reaweaag 46 + l+G G+GK+t++k + e++++ g 23726_FusoPortal_Gene_660 32 EILGLVGENGAGKSTLMKIIfgMEVIRETG 61 47789*************996667777664 PP == domain 2 score: 1.5 bits; conditional E-value: 0.19 AAA_30 82 grarlepgtllivDEagmvdtkq.laallkaaek 114 ++ + e+ +ll+ DE v t++ ++ ll+ ++k 23726_FusoPortal_Gene_660 170 REIERESTKLLVLDEPTAVLTEDeAQILLETMKK 203 334455669******8888555404444444443 PP == domain 3 score: -3.3 bits; conditional E-value: 5.8 AAA_30 22 vltGpAGtGKttalkalreaweaa 45 l G AG GK + +++ +++++ 23726_FusoPortal_Gene_660 305 GLGGMAGQGKIAVANGVMGLFKTK 328 577999999988888877776666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (528 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 988 (0.0591192); expected 334.2 (0.02) Passed bias filter: 642 (0.0384155); expected 334.2 (0.02) Passed Vit filter: 66 (0.00394926); expected 16.7 (0.001) Passed Fwd filter: 17 (0.00101723); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 17 [number of targets reported over threshold] # CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.33 # Mc/sec: 4651.25 // [ok]