# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_669.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_669 [L=170] Description: # 765408 # 765917 # -1 # ID=1_669;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.227 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-08 33.7 0.2 3.1e-05 24.1 0.1 2.6 2 HTH_Tnp_1 Transposase 2e-07 30.9 0.0 0.019 15.0 0.0 2.2 2 HTH_28 Helix-turn-helix domain ------ inclusion threshold ------ 0.013 15.1 0.1 0.03 14.0 0.1 1.7 1 HTH_38 Helix-turn-helix domain 0.044 12.4 0.2 0.061 11.9 0.1 1.3 1 HI0933_like HI0933-like protein 0.046 13.3 5.8 0.076 12.6 0.3 2.7 3 CENP-B_N CENP-B N-terminal DNA-binding domain 0.053 13.2 0.0 8.6 6.2 0.0 2.5 2 HTH_23 Homeodomain-like domain 0.056 13.5 0.4 0.2 11.8 0.4 2.0 1 B-block_TFIIIC B-block binding subunit of TFIIIC 0.1 12.6 0.7 0.28 11.2 0.0 2.3 2 HTH_7 Helix-turn-helix domain of resolvase 0.11 12.9 0.0 0.19 12.1 0.0 1.5 1 LZ_Tnp_IS481 leucine-zipper of insertion element IS481 0.44 10.5 4.1 11 6.0 1.0 2.6 2 DUF4485 Domain of unknown function (DUF4485) 0.55 10.5 8.1 0.44 10.8 3.2 2.7 3 TSC22 TSC-22/dip/bun family Domain annotation for each model (and alignments): >> HTH_Tnp_1 Transposase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.3 0.0 0.0036 5.5 8 39 .. 5 35 .. 2 46 .. 0.90 2 ! 24.1 0.1 2e-08 3.1e-05 3 70 .. 55 138 .. 53 160 .. 0.75 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0036 HTH_Tnp_1 8 sdefKariVreslepgksvsevArrhgvspnq 39 ++e K++i ++ ++g ++s++A+ +v+++ 23726_FusoPortal_Gene_669 5 TRENKIEIFERR-KNGETISSLAKAFDVHKSN 35 789999999999.****************985 PP == domain 2 score: 24.1 bits; conditional E-value: 2e-08 HTH_Tnp_1 3 rrrrwsdefKariVreslepgksvsevArrhg.vspnqLykWrrqyregeeaspae...............feltaleeenrel 70 ++r +s+ fK++i+++ l + s+ +vA + g vs++ L +W ++++e e + +++++++e+++ l 23726_FusoPortal_Gene_669 55 KNRLYSKDFKLQIINRILVNHESINSVAIDIGlVSASILHNWLSKFKENEYNVVEKkkgrkpkfmtkpkknDKVLSEKEKIKLL 138 7899****************************557788********94443333333566666676666664444444444444 PP >> HTH_28 Helix-turn-helix domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.0 0.0 1.2e-05 0.019 2 46 .. 9 53 .. 8 57 .. 0.92 2 ! 13.9 0.0 2.7e-05 0.041 1 51 [. 63 115 .. 63 116 .. 0.90 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 1.2e-05 HTH_28 2 RleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvp 46 ++ei ++ ++G++++ +A+++ ++ + + +i ++G++ L++ 23726_FusoPortal_Gene_669 9 KIEIFERRKNGETISSLAKAFDVHKSNIEYLIALIKKHGFDILRK 53 8999999*********************************99986 PP == domain 2 score: 13.9 bits; conditional E-value: 2.7e-05 HTH_28 1 qRleiiklla.aGhsvreaArelgi.srrtvyrWikryeegGiagLvprrrrp 51 ++l+ii +++ +++s++ +A g+ s + + W++++ e + +++++r+ 23726_FusoPortal_Gene_669 63 FKLQIINRILvNHESINSVAIDIGLvSASILHNWLSKFKENEYNVVEKKKGRK 115 79******998999*************************98777777777776 PP >> HTH_38 Helix-turn-helix domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.1 2e-05 0.03 3 39 .. 2 38 .. 1 41 [. 0.92 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 2e-05 HTH_38 3 khLsleeReeIerllaeGlslreIArrLgrspsTIsR 39 ++L+ e+ eI ++ G++++ A+ ++++s I + 23726_FusoPortal_Gene_669 2 SKLTRENKIEIFERRKNGETISSLAKAFDVHKSNIEY 38 79******************************98876 PP >> HI0933_like HI0933-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.1 4e-05 0.061 57 128 .. 10 85 .. 3 113 .. 0.78 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 4e-05 GGEEES...STTTTHHHHHHS-HHH.....HHHHHHHTT--EEE-STTEEEETT.-CHHHHHHHHHHHHHHT-EEE- CS HI0933_like 57 eellsrypenpkflksalsrftned.....lialveelgvklkeedsgrlFpvsdkaedivdallkelkeagvklrl 128 e+++r ++n+++++s ++f+ ++ lial++++g ++ +d+ rl+ ++ k + i ++l+++ + + v + 23726_FusoPortal_Gene_669 10 IEIFER-RKNGETISSLAKAFDVHKsnieyLIALIKKHGFDILRKDKNRLYSKDFKLQIINRILVNHESINSVAIDI 85 455666.688888877777776543333339*************************999999999988888887765 PP >> CENP-B_N CENP-B N-terminal DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.3 5e-05 0.076 7 40 .. 4 37 .. 2 54 .. 0.85 2 ? 3.3 0.1 0.038 57 12 43 .. 64 97 .. 52 102 .. 0.81 3 ? -2.9 0.2 3.3 5.1e+03 42 50 .. 128 136 .. 126 139 .. 0.60 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 5e-05 --HHHHHHHHHHHHCTT-HHHHHHHHT--CCHHH CS CENP-B_N 7 LTlreKievIqrleegeSkaelarrfnvpestls 40 LT + Kie+ r ge +la+ f v +s + 23726_FusoPortal_Gene_669 4 LTRENKIEIFERRKNGETISSLAKAFDVHKSNIE 37 9*****************************9875 PP == domain 2 score: 3.3 bits; conditional E-value: 0.038 HHHHHHHHHCTT.-HHHHHHHHT--.CCHHHHHH CS CENP-B_N 12 KievIqrleege.Skaelarrfnvp.estlsdil 43 K+++I r+ + S +++a ++++ +s l ++l 23726_FusoPortal_Gene_669 64 KLQIINRILVNHeSINSVAIDIGLVsASILHNWL 97 999*****99999******999964155555555 PP == domain 3 score: -2.9 bits; conditional E-value: 3.3 HHHCHHHHC CS CENP-B_N 42 ilknKkkll 50 +l K+k++ 23726_FusoPortal_Gene_669 128 VLSEKEKIK 136 455566554 PP >> HTH_23 Homeodomain-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 0.0 0.0057 8.6 3 32 .. 5 34 .. 3 52 .. 0.81 2 ? 4.6 0.0 0.018 27 8 43 .. 65 102 .. 64 107 .. 0.79 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0057 HTH_23 3 sereRlrillllaeGlsvreIAreLgvsrr 32 + +++++i ++G +++ A++++v+++ 23726_FusoPortal_Gene_669 5 TRENKIEIFERRKNGETISSLAKAFDVHKS 34 567899999999****************98 PP == domain 2 score: 4.6 bits; conditional E-value: 0.018 HTH_23 8 lrillllae.GlsvreIAreLg.vsrrTvyrwlkryre 43 l+i+ ++ s+ +A g vs + + +wl++++e 23726_FusoPortal_Gene_669 65 LQIINRILVnHESINSVAIDIGlVSASILHNWLSKFKE 102 677777776677777888888889************76 PP >> B-block_TFIIIC B-block binding subunit of TFIIIC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.4 0.00013 0.2 11 46 .. 12 47 .. 10 103 .. 0.91 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 0.00013 B-block_TFIIIC 11 IassRysGitqsdLakeskqdprslfyrlkkLekkg 46 I +R++G+t s+Lak+++ ++++ y++ +k+g 23726_FusoPortal_Gene_669 12 IFERRKNGETISSLAKAFDVHKSNIEYLIALIKKHG 47 5578***********************998888877 PP >> HTH_7 Helix-turn-helix domain of resolvase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 0.00019 0.28 7 33 .. 5 31 .. 2 43 .. 0.84 2 ? -3.3 0.1 6.3 9.5e+03 1 5 [. 113 117 .. 113 118 .. 0.89 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00019 -HHHHGGGGSSTTTT--STTTSSSS-- CS HTH_7 7 skndinrvvkLleeGisiskIAkevni 33 +++ ++++++++G++is +Ak++++ 23726_FusoPortal_Gene_669 5 TRENKIEIFERRKNGETISSLAKAFDV 31 55545589*****************98 PP == domain 2 score: -3.3 bits; conditional E-value: 6.3 S---S CS HTH_7 1 GRpsk 5 GR++k 23726_FusoPortal_Gene_669 113 GRKPK 117 9**98 PP >> LZ_Tnp_IS481 leucine-zipper of insertion element IS481 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 0.00013 0.19 15 63 .. 65 114 .. 51 134 .. 0.74 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 0.00013 LZ_Tnp_IS481 15 vllvrrvvedrrtvaqvarelG.vslrtaykwlarfraeGldGlldrssr 63 +++r++ ++ +++ va ++G vs + wl++f+ + + + + r 23726_FusoPortal_Gene_669 65 LQIINRILVNHESINSVAIDIGlVSASILHNWLSKFKENEYNVVEKKKGR 114 5589******************88999*********98877766555443 PP >> DUF4485 Domain of unknown function (DUF4485) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 0.1 0.015 23 27 48 .. 92 112 .. 88 121 .. 0.78 2 ? 6.0 1.0 0.0075 11 19 67 .. 121 166 .. 114 167 .. 0.72 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.015 DUF4485 27 rvaeWlkkLcepekenleekkn 48 + ++Wl+k e e+ n++ekk+ 23726_FusoPortal_Gene_669 92 ILHNWLSKFKENEY-NVVEKKK 112 6789**********.5555553 PP == domain 2 score: 6.0 bits; conditional E-value: 0.0075 DUF4485 19 lekkeekervaeWlkkLcepekenleekknRNdYlqlLlkmlqngrleg 67 +kk++k++ ++ kL e + + k N+Yl++L +q+++le+ 23726_FusoPortal_Gene_669 121 KPKKNDKVLSEKEKIKLLE--D-EIIYLKAENEYLKKLRALVQERELEE 166 5556666666654444443..3.6788899**************99985 PP >> TSC22 TSC-22/dip/bun family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 2.6 4e+03 30 39 .. 1 10 [. 1 27 [. 0.73 2 ? 1.2 0.0 0.28 4.3e+02 17 45 .. 49 77 .. 41 83 .. 0.82 3 ? 10.8 3.2 0.00029 0.44 20 43 .. 132 155 .. 125 168 .. 0.85 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 2.6 TSC22 30 nseleeENsl 39 +s+l +EN++ 23726_FusoPortal_Gene_669 1 MSKLTRENKI 10 5788888875 PP == domain 2 score: 1.2 bits; conditional E-value: 0.28 TSC22 17 evLkekIkeLeernseleeENslLkalas 45 ++L++ L+++ +l+ N++L ++ s 23726_FusoPortal_Gene_669 49 DILRKDKNRLYSKDFKLQIINRILVNHES 77 78999999999999999999999976655 PP == domain 3 score: 10.8 bits; conditional E-value: 0.00029 TSC22 20 kekIkeLeernseleeENslLkal 43 kekIk Le+++ l++EN++Lk+l 23726_FusoPortal_Gene_669 132 KEKIKLLEDEIIYLKAENEYLKKL 155 9********************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (170 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1145 (0.0685136); expected 334.2 (0.02) Passed bias filter: 361 (0.0216012); expected 334.2 (0.02) Passed Vit filter: 52 (0.00311154); expected 16.7 (0.001) Passed Fwd filter: 11 (0.00065821); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 0.29u 0.27s 00:00:00.56 Elapsed: 00:00:00.38 # Mc/sec: 1300.51 // [ok]