# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_672.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_672 [L=130] Description: # 767440 # 767829 # 1 # ID=1_672;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.251 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-14 52.3 0.0 7.9e-14 52.1 0.0 1.0 1 4HBT_2 Thioesterase-like superfamily ------ inclusion threshold ------ 0.013 15.8 0.0 0.019 15.2 0.0 1.3 1 4HBT Thioesterase superfamily Domain annotation for each model (and alignments): >> 4HBT_2 Thioesterase-like superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.1 0.0 9.5e-18 7.9e-14 5 120 .. 12 123 .. 8 128 .. 0.93 Alignments for each domain: == domain 1 score: 52.1 bits; conditional E-value: 9.5e-18 4HBT_2 5 dvDlnghlnnarylryleearvkflertglksrsiarrgiglilssahvryrrplkfsdrftvefrvididaktfiiehrflsn 88 d+++ h+ n r l +++ ar+ fl ++ l s+s+ g g i+ +a+v+y+++l++ ++++v+ + i+i+ ++i+eh++++ 23726_FusoPortal_Gene_672 12 DLNYGDHVGNERALLFFQWARESFLRQNNL-SESNIGDGSGFIQVEATVQYKKQLFLDQKIEVRITKIEIKGLKIIFEHEIYN- 93 666777**9*****9***********999*.999999**********************************************. PP 4HBT_2 89 adgkkaarveerivvmdygkrskkapvPpell 120 + ++++++ ++ ++y+++ k ++vP ++ 23726_FusoPortal_Gene_672 94 -GQDLVITGTATVLAYNYEEQ-KVKKVPANFK 123 .9999***************9.******6654 PP >> 4HBT Thioesterase superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.2 0.0 2.3e-06 0.019 16 78 .. 31 99 .. 23 100 .. 0.85 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 2.3e-06 HHHHHHHHTTST......TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEE CS 4HBT 16 aagaalrslggr......gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrlv 78 a+ +lr +++ g+++ ve +++++++ l+++++v+ + +++++ + +e+e++++++ ++ 23726_FusoPortal_Gene_672 31 ARESFLRQNNLSesnigdGSGFIQVEATVQYKKQLFLDQKIEVRITKIEIKGLKIIFEHEIYNGQDLVI 99 666666666666777777899999****************************************99875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (130 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 635 (0.0379966); expected 334.2 (0.02) Passed bias filter: 340 (0.0203447); expected 334.2 (0.02) Passed Vit filter: 28 (0.00167544); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.22u 0.22s 00:00:00.44 Elapsed: 00:00:00.31 # Mc/sec: 1219.08 // [ok]