# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_675.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_675 [L=100] Description: # 769023 # 769322 # -1 # ID=1_675;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.243 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.088 11.7 0.1 0.11 11.4 0.1 1.0 1 HMG-CoA_red Hydroxymethylglutaryl-coenzyme A reductase Domain annotation for each model (and alignments): >> HMG-CoA_red Hydroxymethylglutaryl-coenzyme A reductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.1 6.3e-06 0.11 173 241 .. 7 75 .. 3 82 .. 0.83 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 6.3e-06 HHHHHHHHHHTSEEEEEEE-S--GGGEEEEEEEEEHHHH..-SSTTHHHHHH.HHHHHHHHHHHH-HHHH CS HMG-CoA_red 173 avaelieeefgeeellsilsNlctdkkasainviegrgksvvaeatigeevv.ekilkataealvdlnra 241 +++ i++ ++e++ + ++sNl ++ + a+n g++ vvae++ + e++ ++i k+ ++ ++d +++ 23726_FusoPortal_Gene_675 7 DAINNINRFIQETKFIDVSSNLKVEENVVARNLQ-GKESDVVAEVMENLELIfKEISKVHNKGQADEYTE 75 567788889999****************999865.55666999999776654499999999999998876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (100 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1061 (0.0634873); expected 334.2 (0.02) Passed bias filter: 462 (0.0276448); expected 334.2 (0.02) Passed Vit filter: 36 (0.00215414); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.21u 0.23s 00:00:00.44 Elapsed: 00:00:00.30 # Mc/sec: 969.01 // [ok]