# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_676.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_676 [L=443] Description: # 769542 # 770870 # 1 # ID=1_676;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.296 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-30 104.4 40.2 6.1e-30 104.1 40.2 1.1 1 Xan_ur_permease Permease family ------ inclusion threshold ------ 0.45 10.5 4.1 0.33 10.9 0.7 2.4 2 DUF4501 Domain of unknown function (DUF4501) Domain annotation for each model (and alignments): >> Xan_ur_permease Permease family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 104.1 40.2 7.4e-34 6.1e-30 3 386 .. 29 402 .. 27 409 .. 0.90 Alignments for each domain: == domain 1 score: 104.1 bits; conditional E-value: 7.4e-34 HHHHHHHHHHHHHHHHHHHHHTTTS-.........H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-.....H CS Xan_ur_permease 3 llllglQhllamfaalvvvPllvgdalglaeelrqlisatllasGiatllqllifgirlpillgssfafvtalmialGsa.edi 85 +l++gl+++++m + l ++P ++ a gl + +++ +a +++ +i +++++l+++ + +++ g+s ++ G+a +++ 23726_FusoPortal_Gene_676 29 ELIAGLTTFATMSYVLATIPNMLEGA-GL--NRASILTALIIFIIICSIAMALYTNRPFALAPGLSSVAII------GTAlPQM 103 799***********************.54..3347777788888899999999888888888888776665......4334679 PP HHHHHHHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHH CS Xan_ur_permease 86 eialagllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaavegltvvslkllllavvvll 169 + +++++g ++++g++f++is++g+r+ ++++ip v + +iGl + i++k++g + a+ +++t+ +++ +++ ++ + 23726_FusoPortal_Gene_676 104 NMPVEVAFGLVFLSGLIFVIISFVGIREIVVKAIPASVKISISAGIGLYISLIGLKMAGVVVANPKNNTLNLGDMTTAKSILFV 187 9************************************************************9995556**************** PP HHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHHHTTSSHHHHS-SS-----------HH.....H.HHHHTHHH.HHHHHHHHH CS Xan_ur_permease 170 villlsvflkglfsqlpiLigiiagwllalfmgivnlspevseapwfqlpsplkfgtpl...fnlgliltvlavalvavvesvG 250 +++ll+ +l+ + ++++ ++i++++++ + mg++++ + + p+ + +k+ ++++ ++ ++++++ ++ ++G 23726_FusoPortal_Gene_676 188 IGFLLILVLEARKIKGSLILAILIVTIIGIPMGVTKVPTNLINIPTGISDISFKID--IlgaLKPEYFPWIFTFFVPDFFGTMG 269 *********************************77777765565555443333333..2557********************** PP HHHHHHHHHTS-TII..IIIHHHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHH CS Xan_ur_permease 251 diravakvvgrslkp..kpdlrralladGlatllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaall 332 i ++a+ +g +k+ ++d+ r + +d+l+t+ ++++ + +tty e++ +v+ + +r+++ta l++l +++ + 23726_FusoPortal_Gene_676 270 IILGIANRAGWLDKDgnMQDIDRCFKVDSLSTVAGSFFCMPVMTTYLESASGVEDG----GRTGMTALFTSFLFALTLLFTPIA 349 **********9999999***************************************....************************ PP TTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHH---- CS Xan_ur_permease 333 ssIPepvlgGvllvvfgmiaasgvsnlqtvdldsarnllivavslvlGlgvatv 386 ++P+ + +++ l + g ++s++++++ +d +++ ++i + +++ ++at+ 23726_FusoPortal_Gene_676 350 LMVPGVA-TAPVLTIIGFQMLSSMKSVNYNDKTESLPAFIAVAMTIFTFNIATG 402 *****99.*************************999988877777777777765 PP >> DUF4501 Domain of unknown function (DUF4501) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.9 0.1 0.16 1.4e+03 88 113 .. 59 82 .. 19 89 .. 0.68 2 ? 10.9 0.7 4e-05 0.33 66 123 .. 367 429 .. 349 434 .. 0.80 Alignments for each domain: == domain 1 score: -0.9 bits; conditional E-value: 0.16 DUF4501 88 aslllgtlfislfLilsvasffylkr 113 as +l l i ++i s+a+ +y +r 23726_FusoPortal_Gene_676 59 AS-ILTAL-IIFIIICSIAMALYTNR 82 33.44444.44589999999999877 PP == domain 2 score: 10.9 bits; conditional E-value: 4e-05 DUF4501 66 nlplnrstvtpvlpkvggPev.aaslllgtlfislfLilsvasffylk....rssklPkvfYr 123 ++ + +v + ++ + P+ a+++ + t+ i+++L lsv s++ lk +++++Pkv+Y 23726_FusoPortal_Gene_676 367 QMLSSMKSVNYNDKTESLPAFiAVAMTIFTFNIATGLSLSVLSYIILKvfsgKAKEIPKVMYG 429 455555666666666677764499999********************9666678999***996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (443 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 807 (0.0482887); expected 334.2 (0.02) Passed bias filter: 245 (0.0146601); expected 334.2 (0.02) Passed Vit filter: 21 (0.00125658); expected 16.7 (0.001) Passed Fwd filter: 5 (0.000299186); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.28u 0.24s 00:00:00.52 Elapsed: 00:00:00.32 # Mc/sec: 4024.42 // [ok]