# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_681.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_681 [L=99] Description: # 772994 # 773290 # 1 # ID=1_681;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.256 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0096 15.1 2.8 0.012 14.8 2.8 1.0 1 ISG65-75 Invariant surface glycoprotein ------ inclusion threshold ------ 0.011 15.5 2.4 0.015 15.1 2.4 1.2 1 DUF724 Protein of unknown function (DUF724) 0.023 13.9 3.7 0.026 13.8 3.7 1.0 1 FAM76 FAM76 protein 0.03 14.8 0.3 0.088 13.3 0.3 1.8 1 DUF3139 Protein of unknown function (DUF3139) 0.092 11.9 0.7 0.11 11.6 0.7 1.1 1 PUL PUL domain Domain annotation for each model (and alignments): >> ISG65-75 Invariant surface glycoprotein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 2.8 3.5e-06 0.012 67 131 .. 26 92 .. 15 94 .. 0.89 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 3.5e-06 ISG65-75 67 enakekvdyyvekleslleeake..kgtltesdaeklkkaceeAkaknkkarekakkalekaekask 131 e++ +k+ ++++++ ++le++ + +++l ++++++++k+ +e ++ n++ ++ka+++l+k k ++ 23726_FusoPortal_Gene_681 26 ESDRKKILKELKEVSDRLEKNGNekDAQLVMKKIDEIMKITAELERRNADGDKKAEEELDKWSKDIE 92 678899999********9998765578899*****************************99888765 PP >> DUF724 Protein of unknown function (DUF724) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 2.4 4.3e-06 0.015 45 126 .. 6 92 .. 3 98 .. 0.71 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 4.3e-06 DUF724 45 lGlmvsfagll..ekvkklsiddsvseleslkeslaeLekhGF..dVkalqsrlnkLlslkdeqtk.lleelkklekkieeees 123 + +m+ f+ ++ ek+ +s d +++l++lke Lek+G d + +++++++++++ e ++ ++ kk+e+++ + ++ 23726_FusoPortal_Gene_681 6 ILMMIAFSLVVygEKFPYTSESDRKKILKELKEVSDRLEKNGNekDAQLVMKKIDEIMKITAELERrNADGDKKAEEELDKWSK 89 567877776655599999999999999999999999999999644788888888888888777554145556666666655554 PP DUF724 124 eks 126 + + 23726_FusoPortal_Gene_681 90 DIE 92 444 PP >> FAM76 FAM76 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 3.7 7.6e-06 0.026 214 284 .. 26 97 .. 17 98 .. 0.89 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 7.6e-06 FAM76 214 ssdhlvavtqLkeeiaslkkqleqkdqellekd.kkitelkaellekekelreklkelekeakekieklekk 284 sd+ +++Lke +l+k+ ++kd +l+ k+ +i +++ael++ +++ +k +e + ++ ie+l+ k 23726_FusoPortal_Gene_681 26 ESDRKKILKELKEVSDRLEKNGNEKDAQLVMKKiDEIMKITAELERRNADGDKKAEEELDKWSKDIEELDIK 97 577777899*******************98776479************************999999999865 PP >> DUF3139 Protein of unknown function (DUF3139) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.3 2.6e-05 0.088 5 44 .. 3 51 .. 1 98 [. 0.74 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 2.6e-05 DUF3139 5 iiilillillivillvgskpik.ylg.kkidkyl.......eeqgykks 44 +i++++ i+++++++ ++p+ + kki k l e++g k+ 23726_FusoPortal_Gene_681 3 KILILMMIAFSLVVYGEKFPYTsESDrKKILKELkevsdrlEKNGNEKD 51 5677777777777788999988776685555555444444466665554 PP >> PUL PUL domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.7 3.2e-05 0.11 10 55 .. 24 79 .. 19 94 .. 0.78 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 3.2e-05 PUL 10 kk.anldkllkKlkelNekllsag.qkdlalsdeelatLeallaale........s 55 ++ + +k+lk lke+ + l+++g +kd +l ++++++ +++a le + 23726_FusoPortal_Gene_681 24 TSeSDRKKILKELKEVSDRLEKNGnEKDAQLVMKKIDEIMKITAELErrnadgdkK 79 5557789****************66*********************8765443321 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (99 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 2101 (0.125718); expected 334.2 (0.02) Passed bias filter: 936 (0.0560077); expected 334.2 (0.02) Passed Vit filter: 92 (0.00550503); expected 16.7 (0.001) Passed Fwd filter: 5 (0.000299186); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.24u 0.25s 00:00:00.49 Elapsed: 00:00:00.32 # Mc/sec: 899.36 // [ok]