# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_684.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_684 [L=351] Description: # 775238 # 776290 # 1 # ID=1_684;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.213 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.14 12.3 14.4 0.11 12.7 5.9 3.1 3 Orf78 Orf78 (ac78) 1.6 8.1 7.3 10 5.5 2.4 2.7 3 5TM-5TMR_LYT 5TMR of 5TMR-LYT Domain annotation for each model (and alignments): >> Orf78 Orf78 (ac78) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 5.9 1.3e-05 0.11 27 97 .. 53 123 .. 27 132 .. 0.75 2 ? 3.8 0.8 0.008 67 73 95 .. 207 233 .. 198 241 .. 0.58 3 ? -3.3 0.0 1.3 1.1e+04 76 80 .. 263 267 .. 245 273 .. 0.53 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 1.3e-05 Orf78 27 dnddndkaenkkekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyYfvilrerqkssv 97 +n+ ++ka ++++ +++ +++ ++++++ ++k +++n+ l+ + ++++++ l ++i+Y +i e q++ 23726_FusoPortal_Gene_684 53 NNKVKEKALSSQKIFRQNINKSYKNSQNKIKNKIEEYNLYLVFAASILTIMTLGWAIFYSFINNEYQNNRS 123 23334444444444455555555555566788999999*************************99888755 PP == domain 2 score: 3.8 bits; conditional E-value: 0.008 Orf78 73 vvcvlvllyviyYfvi....lrerqks 95 ++ +++l++ i+++vi l+er+ + 23726_FusoPortal_Gene_684 207 FMYIFLLFFTIFFIVInlivLKERKDK 233 444555555555555411116666554 PP == domain 3 score: -3.3 bits; conditional E-value: 1.3 Orf78 76 vlvll 80 ++++l 23726_FusoPortal_Gene_684 263 IFIIL 267 33333 PP >> 5TM-5TMR_LYT 5TMR of 5TMR-LYT # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.5 2.4 0.0013 10 80 163 .. 95 179 .. 89 184 .. 0.86 2 ? -1.4 0.1 0.17 1.4e+03 112 132 .. 206 225 .. 192 233 .. 0.47 3 ? 4.2 0.0 0.0031 26 5 32 .. 249 276 .. 245 304 .. 0.73 Alignments for each domain: == domain 1 score: 5.5 bits; conditional E-value: 0.0013 5TM-5TMR_LYT 80 ftalacgistilagllaGlihrklkrrr.kkltvlvalligllveilqmllilllakpfdqalalvktialPmilvnslgtalf 162 f+a + i+t+ +++ ++i + ++++r k +++ + ++ l e + + l++l+ + + ++ vk i +P ++n + +lf 23726_FusoPortal_Gene_684 95 FAASILTIMTLGWAIFYSFINNEYQNNRsKIFSMPKNFFKINLYENIMIWLFILIPPLLYVSYKKVKGIKIPFYFFNVFMEVLF 178 6788888999999999999999999988999999999999999999887788888888999****************9987777 PP 5TM-5TMR_LYT 163 l 163 23726_FusoPortal_Gene_684 179 T 179 5 PP == domain 2 score: -1.4 bits; conditional E-value: 0.17 5TM-5TMR_LYT 112 vlvalligllveilqmllill 132 ++ +++ l+ i+ +++ l+ 23726_FusoPortal_Gene_684 206 LFMYIFL-LFFTIFFIVINLI 225 3333333.2223334444444 PP == domain 3 score: 4.2 bits; conditional E-value: 0.0031 5TM-5TMR_LYT 5 rkllsekrktlksklllglifglfsilg 32 ++l +++r+ +k+ ++++l++g++++ 23726_FusoPortal_Gene_684 249 KNLKKKNREGWKNSIFIILYVGILGLAY 276 677778888***************9864 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (351 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 2251 (0.134694); expected 334.2 (0.02) Passed bias filter: 447 (0.0267472); expected 334.2 (0.02) Passed Vit filter: 46 (0.00275251); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.29u 0.24s 00:00:00.53 Elapsed: 00:00:00.31 # Mc/sec: 3291.51 // [ok]