# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_687.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_687 [L=129] Description: # 778381 # 778767 # 1 # ID=1_687;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.341 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-06 28.1 0.0 2.7e-06 27.5 0.0 1.2 1 4HBT Thioesterase superfamily 0.0077 15.7 0.0 0.01 15.3 0.0 1.2 1 MaoC_dehydratas MaoC like domain Domain annotation for each model (and alignments): >> 4HBT Thioesterase superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.5 0.0 3.2e-10 2.7e-06 6 71 .. 23 87 .. 18 89 .. 0.90 Alignments for each domain: == domain 1 score: 27.5 bits; conditional E-value: 3.2e-10 HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEE CS 4HBT 6 gGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevr 71 g+++l+l+ +a+++l l g+ +++ + +s++f++pv gd +++e++++++g++s ++ e r 23726_FusoPortal_Gene_687 23 GARMLQLFGDVATELLIQLDGD-EGLFKAYDSVEFMAPVFAGDYIEAEGEIVNVGNSSRKMVFEAR 87 8999999999999999999998.**********************************987776665 PP >> MaoC_dehydratas MaoC like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 0.0 1.2e-06 0.01 81 117 .. 52 88 .. 30 92 .. 0.82 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 1.2e-06 EEEEE-S--BTTCEEEEEEEEEEEEEEEEEEEEEEEE CS MaoC_dehydratas 81 ikvrFtkpVlpgdtlkvelevvgkrdvrktkkvevtk 117 ++v F +pV++gd +++e e v++ + ++ + e++k 23726_FusoPortal_Gene_687 52 DSVEFMAPVFAGDYIEAEGEIVNVGNSSRKMVFEARK 88 68*********************88887766777766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (129 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 258 (0.015438); expected 334.2 (0.02) Passed bias filter: 244 (0.0146003); expected 334.2 (0.02) Passed Vit filter: 9 (0.000538535); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.22u 0.24s 00:00:00.46 Elapsed: 00:00:00.31 # Mc/sec: 1209.70 // [ok]