# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_697.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_697 [L=369] Description: # 789571 # 790677 # 1 # ID=1_697;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.317 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each model (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (369 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 481 (0.0287817); expected 334.2 (0.02) Passed bias filter: 266 (0.0159167); expected 334.2 (0.02) Passed Vit filter: 15 (0.000897559); expected 16.7 (0.001) Passed Fwd filter: 0 (0); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.25u 0.22s 00:00:00.47 Elapsed: 00:00:00.30 # Mc/sec: 3575.65 // [ok]