# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_698.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_698 [L=459] Description: # 790945 # 792321 # 1 # ID=1_698;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.337 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-175 582.5 26.8 6.5e-175 582.4 26.8 1.0 1 SCFA_trans Short chain fatty acid transporter 2e-06 26.3 3.7 2e-06 26.3 3.7 2.2 3 ABG_transport AbgT putative transporter family 1.7e-05 23.4 14.0 1.7e-05 23.4 14.0 2.4 2 DcuC C4-dicarboxylate anaerobic carrier Domain annotation for each model (and alignments): >> SCFA_trans Short chain fatty acid transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 582.4 26.8 1.2e-178 6.5e-175 2 453 .] 11 458 .. 10 458 .. 0.98 Alignments for each domain: == domain 1 score: 582.4 bits; conditional E-value: 1.2e-178 SCFA_trans 2 lerlsaalvalvskylPdplifallltlvtfvlvlvltkqtavslvdvwgnGfwnllsfamqmalilvtGqalassklvkkllk 85 ++r+++++v++++++lPdp+if +llt+++f+ +++ltk t++++v w +Gfw+llsf+mqmal+lvtG++lass+l kk+l+ 23726_FusoPortal_Gene_698 11 FKRFTSMCVRVMERWLPDPFIFCALLTFIVFIGAIFLTKATPLQVVGFWADGFWSLLSFSMQMALVLVTGHTLASSRLFKKMLS 94 5899******************************************************************************** PP SCFA_trans 86 kiaslakdtksavvlvtllaliaavinwGlGlvvgailakevarrvkgldyalliaaayiglltwhgGlsgsiPllvatpnepl 169 + as k++k+a+++v++++ ia+ +nwG+Glv+ga++ake+a++vkg+dy+llia+ay+g+l+whgGlsgsiPl +a+ +e l 23726_FusoPortal_Gene_698 95 TFASGIKGPKQAILIVSIVSGIACALNWGFGLVIGALFAKEIAKKVKGVDYRLLIASAYTGFLVWHGGLSGSIPLQLASGGEGL 178 ************************************************************************************ PP SCFA_trans 170 kkiavelvgreiiPvsetlfssynliilailivvlplitamlaPkkeevksidkkllkeekeeekklkskkdatiaekleeskl 253 +k +++ v e+iP s+tlfs+ n++i++ l++++pl+ +++ P k+e++++d+kll + +e + ++t ae++e+s 23726_FusoPortal_Gene_698 179 AKQTAG-VVTEAIPTSQTLFSPMNIFIIVGLLIIVPLLNMAMFPSKDEIVEVDPKLLVKPEEVVMDTS---KMTPAERVENSSA 258 ***998.8899*********************************************998777665555...89*********** PP SCFA_trans 254 lallisilGiaylgvyfyekGfnltlnsvnlifllvGlllhktPlaymraitraarsvaGilvqfPfyaGimgmmessalGGps 337 +++l+si+G+ y+g+y+ kGf l+ln vn+ifl++G+llh tP y+ a+ +a++ Gil+qfPfyaGimg+m + G s 23726_FusoPortal_Gene_698 259 VSILLSIMGFVYIGYYLKTKGFALNLNLVNFIFLFLGILLHGTPRRYLNALAEATKGAGGILLQFPFYAGIMGIMVGADADGMS 342 ************************************************************************************ PP SCFA_trans 338 latliaeafinvankktfplltlfsaalinifiPsGGGewaiqgpilipaaqalGvdlGksvlaiayGdawtnliqPfwalPal 421 la+l++++f++++++ktfp+++++sa+++n+f+PsGGG+wa+q+pi++pa+qa+Gv ks++aia+Gdawtn+iqPfwalPal 23726_FusoPortal_Gene_698 343 LAKLMSNFFVSISTEKTFPVFSFISAGVVNFFVPSGGGQWAVQAPIVMPAGQAIGVSAAKSAMAIAWGDAWTNMIQPFWALPAL 426 ************************************************************************************ PP SCFA_trans 422 aiaGlgardilGycitalilaglilviglvll 453 +iaGlga+di+Gyc+ + +++g+ ++ g+ l+ 23726_FusoPortal_Gene_698 427 GIAGLGAKDIMGYCLIVTVVSGIFICTGFLLF 458 ****************************9885 PP >> ABG_transport AbgT putative transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 1.4 0.18 9.8e+02 13 34 .. 26 47 .. 16 148 .. 0.53 2 ? -3.2 0.2 0.3 1.7e+03 19 390 .. 196 212 .. 184 238 .. 0.55 3 ! 26.3 3.7 3.5e-10 2e-06 347 445 .. 326 423 .. 301 447 .. 0.80 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 0.18 ABG_transport 13 lPdPvllfiilivvllvasail 34 lPdP+++ ++l ++++ + l 23726_FusoPortal_Gene_698 26 LPDPFIFCALLTFIVFIGAIFL 47 6666665555555555544332 PP == domain 2 score: -3.2 bits; conditional E-value: 0.3 ABG_transport 19 lfiilivvllvasailsalglsvknpraegeketievknllseeglallltelvknftsfapLGlvLvvllGvgvaersGllsa 102 lf + + ++v i+ 23726_FusoPortal_Gene_698 196 LFSPMNIFIIVGLLII-------------------------------------------------------------------- 211 3333333333332222.................................................................... PP ABG_transport 103 llkklvrkapkklitptvvligilshtasdaayvvliPlaallfialGrhPlaGlaaafagvsggfsanlllgtlDvllagitq 186 23726_FusoPortal_Gene_698 - ------------------------------------------------------------------------------------ - .................................................................................... PP ABG_transport 187 eaariidpsykvnplanwyfiaasvvvlvlialfvtdkivePrLgkykgeeekdekeelaselteeekkglryaglavvvvial 270 23726_FusoPortal_Gene_698 - ------------------------------------------------------------------------------------ - .................................................................................... PP ABG_transport 271 laltviPeegiLrdeekesvaksPflksivalilllflvpglvYGivtktiknekdvvkalaesmssmgayivlvffaaqfval 354 23726_FusoPortal_Gene_698 - ------------------------------------------------------------------------------------ - .................................................................................... PP ABG_transport 355 fnwsnlGkilavkgaelLkeigltgillllglills 390 23726_FusoPortal_Gene_698 212 -----------------------------------V 212 ...................................2 PP == domain 3 score: 26.3 bits; conditional E-value: 3.5e-10 ABG_transport 347 faaqfvalfnwsnlGkilavkgaelLkeigltgillllglillsalinlligsasakWavlaPifvPmlmllgisPeltqaayR 430 a+ + ++ G la +++ +i +++ ++++i ++++n+++ s+ +Wav aPi++P ++g+s + + +a 23726_FusoPortal_Gene_698 326 YAGIMGIMVGADADGMSLAKLMSNFFVSISTEKTFPVFSFIS-AGVVNFFVPSGGGQWAVQAPIVMPAGQAIGVSAAKSAMAIA 408 444444555555566777777777777787777778888875.79*************************************** PP ABG_transport 431 igDsvtniitPlmsy 445 gD+ tn+i P+ + 23726_FusoPortal_Gene_698 409 WGDAWTNMIQPFWAL 423 ***********8765 PP >> DcuC C4-dicarboxylate anaerobic carrier # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 2.2 0.016 91 258 339 .. 35 121 .. 23 149 .. 0.64 2 ! 23.4 14.0 3e-09 1.7e-05 238 447 .. 241 442 .. 177 458 .. 0.74 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 0.016 DcuC 258 ilfvlplilvllg...lafvivn..gewylpeiavlflamgilvefiak...lnglkekeiveafveGaaellgvalvvglarg 333 +l ++++i+ ++ + ++ g w +l++ m + + ++++ + + k++++ f G + ++ l+v ++ g 23726_FusoPortal_Gene_698 35 LLTFIVFIGAIFLtkaT---PLQvvGFWADGFWSLLSFSMQMALVLVTGhtlASSRLFKKMLSTFASGIKGPKQAILIVSIVSG 115 44444444444432221...22232112222223344445555555555444577888999********9998999******99 PP DcuC 334 veviae 339 + ++ 23726_FusoPortal_Gene_698 116 IACALN 121 987766 PP == domain 2 score: 23.4 bits; conditional E-value: 3e-09 DcuC 238 fskeksesees.fskrqkvvlilfvlplilvllglafvivngewylpeiavlflamgilvefiaklnglkekeiveafveGaae 320 ++++ + + ++ ++++ +v +l ++ ++ + + ++ ++++l + +fl++gil+ ++ ++ + +++Ga+ 23726_FusoPortal_Gene_698 241 VMDTSKMTPAErVENSSAVSILLSIMGFVYIGYY--LKTKGFALNLNLVNFIFLFLGILLHGTP---RRYLNA-LAEATKGAGG 318 4444444444435555666666666666666553..3344456888999999999999998777...444444.4445788877 PP DcuC 321 llg....valvvglargveviaeggmiidtilnlisnalsglsg.ivfilvmlliqallafvvpSgsglavltmplmapLAdlv 399 +l a + g+++g+ +gm + +l+sn+ ++s f ++ + +++f+vpSg g+ ++ +p++ p ++ + 23726_FusoPortal_Gene_698 319 ILLqfpfYAGIMGIMVGAD---ADGMS---LAKLMSNFFVSISTeKTFPVFSFISAGVVNFFVPSGGGQWAVQAPIVMPAGQAI 396 6531222477777777776...35554...56778888777777799999999999**************************** PP DcuC 400 gvpralvvlafqlasgllniisPtsgvvvatlglarvsfgtwvkfvak 447 gv++a +a +++ +n+i P + +lg+a + ++++ + ++ 23726_FusoPortal_Gene_698 397 GVSAAKSAMAIAWGDAWTNMIQPF--WALPALGIAGLGAKDIMGYCLI 442 ***********************9..6678888888888777765433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (459 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 602 (0.036022); expected 334.2 (0.02) Passed bias filter: 259 (0.0154978); expected 334.2 (0.02) Passed Vit filter: 23 (0.00137626); expected 16.7 (0.001) Passed Fwd filter: 5 (0.000299186); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.28u 0.23s 00:00:00.51 Elapsed: 00:00:00.31 # Mc/sec: 4304.28 // [ok]