# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_706.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_706 [L=310] Description: # 799034 # 799963 # -1 # ID=1_706;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.299 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-25 87.1 0.4 2.4e-23 82.0 0.1 2.5 2 ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synth 2.3e-20 72.1 0.0 4.9e-20 71.1 0.0 1.5 1 ACP_syn_III 3-Oxoacyl-[acyl-carrier-protein (ACP)] synth 3.5e-06 26.4 0.2 5.1e-05 22.6 0.1 2.1 2 FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like prote 0.0041 16.4 0.6 0.012 14.8 0.2 1.9 2 Thiolase_N Thiolase, N-terminal domain 0.0049 15.5 0.4 0.015 13.9 0.1 2.0 2 SpoVAD Stage V sporulation protein AD (SpoVAD) 0.0077 15.8 0.5 0.61 9.6 0.0 2.9 2 Thiolase_C Thiolase, C-terminal domain ------ inclusion threshold ------ 0.015 14.7 0.0 0.023 14.0 0.0 1.3 1 Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal 0.049 13.2 0.6 0.51 9.9 0.1 2.2 2 Peptidase_M22 Glycoprotease family 0.061 13.0 0.0 0.12 12.0 0.0 1.4 1 DUF1948 Domain of unknown function (DUF1948) 0.12 11.7 0.0 0.24 10.7 0.0 1.5 1 USP7_ICP0_bdg ICP0-binding domain of Ubiquitin-specific pr Domain annotation for each model (and alignments): >> ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.0 0.0 0.066 1.1e+02 1 60 [. 46 106 .. 46 124 .. 0.63 2 ! 82.0 0.1 1.4e-26 2.4e-23 1 90 [] 221 309 .. 221 309 .. 0.96 Alignments for each domain: == domain 1 score: 3.0 bits; conditional E-value: 0.066 HHHTT--GGG-SEEEE-SS.SHHHHHHHHHHHT--GGGB--THHHH-B-GGGHHHHHHHHH CS ACP_syn_III_C 1 Lekagltpedidalvphqa.nlriidavakklglpeekvvvnldeyGntsaasiplaLdea 60 L++a++t +did++v a ++ i +a ++ + k + + + nt+ s + aLd++ 23726_FusoPortal_Gene_706 46 LKNANITIDDIDCIVSASAvGIQPIPCMAALIHEKIAKGTSIPALDINTTCTSFITALDTM 106 6789999999999987665245555556666655555555555555566666666666665 PP == domain 2 score: 82.0 bits; conditional E-value: 1.4e-26 HHHTT--GGG-SEEEE-SSSHHHHHHHHHHHT--GGGB--THHHH-B-GGGHHHHHHHHHHHTTSS-TT-EEEEEEEETTTEEE CS ACP_syn_III_C 1 LekagltpedidalvphqanlriidavakklglpeekvvvnldeyGntsaasiplaLdeaveegklkpgdlvllvgfGaGltwg 84 Le+++++ +did+l+phqa+ + +++klg+p+ k++++++e+Gn+++as+p++L++ +e++k+k+gd +ll+g+ aGlt 23726_FusoPortal_Gene_706 221 LENNNMKISDIDMLIPHQASVA-MPLIMEKLGVPKGKYINEVKEFGNMVSASVPMTLAHGLEKQKIKNGDIILLIGTAAGLTTN 303 789****************975.688********************************************************** PP EEEEE- CS ACP_syn_III_C 85 aallrw 90 +l+++ 23726_FusoPortal_Gene_706 304 IMLIKI 309 999985 PP >> ACP_syn_III 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.1 0.0 2.9e-23 4.9e-20 1 75 [. 90 163 .. 90 167 .. 0.92 Alignments for each domain: == domain 1 score: 71.1 bits; conditional E-value: 2.9e-23 EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGCS-TTTHHHHTTB-EEEEEEEEEEESSSSCEEEEEE CS ACP_syn_III 1 fDlnaaCsgfvyalsvAaaliesgaakrvLvigaetlsrilDwkdrstavlfGDGAgAvvleaseeegsrildse 75 +D+n++C++f++al++ + l+e+g++krvL+++ +++sr l++k++++ lf+DGA A+++e+++ ++++++d+ 23726_FusoPortal_Gene_706 90 LDINTTCTSFITALDTMSYLLETGRYKRVLIVSCDVASRALNPKQKESFQLFSDGAVAFIVEKTD-KEIGVIDAM 163 59*************************************************************95.444677765 PP >> FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.6 0.1 3.1e-08 5.1e-05 57 177 .. 7 128 .. 2 157 .. 0.86 2 ? 1.7 0.0 0.073 1.2e+02 86 110 .. 212 236 .. 173 246 .. 0.73 Alignments for each domain: == domain 1 score: 22.6 bits; conditional E-value: 3.1e-08 FAE1_CUT1_RppA 57 lgeetyvPravlelpekktlaeareEaee.vlfgavdellaktkvspkdidilvvncsl.fsptPslsamvvnryklredvksy 138 +g +P+++++ +e+ + + + +E + + ++a ++ l++++++ +did +v ++++ +p P ++a++ ++ + + ++ 23726_FusoPortal_Gene_706 7 IGYGVELPKNTVNFKEQIRYRISGDEKQIsLAVSACQKALKNANITIDDIDCIVSASAVgIQPIPCMAALIHEKIAKGTSIPAL 90 56667799*********999988888886155799*******************99987579********************** PP FAE1_CUT1_RppA 139 nLsgmGCsAglisidlaknllqvhkntlalvvstEnitl 177 ++ C+ + ++d + ll++ + + +l+vs + + 23726_FusoPortal_Gene_706 91 DINT-TCTSFITALDTMSYLLETGRYKRVLIVSCDVASR 128 *998.8***************************987665 PP == domain 2 score: 1.7 bits; conditional E-value: 0.073 FAE1_CUT1_RppA 86 vlfgavdellaktkvspkdidilvv 110 + ++++e l++++++ +did+l+ 23726_FusoPortal_Gene_706 212 KVPKMMEEFLENNNMKISDIDMLIP 236 455689999**************95 PP >> Thiolase_N Thiolase, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.2 7.4e-06 0.012 24 118 .. 35 129 .. 27 171 .. 0.79 2 ? -0.9 0.0 0.47 7.9e+02 70 111 .. 250 295 .. 215 298 .. 0.71 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 7.4e-06 HHHHHHHHHHHHHHHTS-GGGEEEEEEE-SSBTTSTSCHHHHHHHHTTS-TTSEEEEEE-GGGHHHHHHHHHHHHHHTTS-SEE CS Thiolase_N 24 eeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvv 107 L+ +a +++l++a+++ +++d ++ + + +a ++ k+ ++pa +n +c S ++a+ ++ + +g+++ v 23726_FusoPortal_Gene_706 35 ISLAVSACQKALKNANITIDDIDCIVSASAVGIQPIPCMAALIHEKIAKGTSIPALDINTTCTSFITALDTMSYLLETGRYKRV 118 5788999***************9887766554444444555555555566789****************************999 PP EEEEEEESTTS CS Thiolase_N 108 vagGvEsmsna 118 +++ + s+a 23726_FusoPortal_Gene_706 119 LIVSCDVASRA 129 98877666655 PP == domain 2 score: -0.9 bits; conditional E-value: 0.47 TTS-TTSEEEEE....E-GGGHHHHHHHHHHHHHHTTS-SEEEEEE CS Thiolase_N 70 agipeevpavtv....nkvcsSglkavalaaqsiaageadvvvagG 111 +g+p+ + v n+v++S +++a++ ++ + ++ d+++++G 23726_FusoPortal_Gene_706 250 LGVPKGKYINEVkefgNMVSASVPMTLAHGLEKQKIKNGDIILLIG 295 5555555555553333678888888888888888888888888887 PP >> SpoVAD Stage V sporulation protein AD (SpoVAD) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.9 0.1 8.8e-06 0.015 52 133 .. 35 123 .. 20 156 .. 0.84 2 ? -1.7 0.0 0.52 8.7e+02 57 77 .. 215 235 .. 170 240 .. 0.62 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 8.8e-06 HHHHHHHHHHHHHHTT--GGG-SEEEEEESSG.GGHHHHHH......HHHH---EEEB--GGGHHHHHHHHHHHHHHTTS-SEE CS SpoVAD 52 sklleeavkkalkkanlkkedidfllaGDLln.qlisssfa......arelkiPflglygaCstsaeslalaallvdggfakrv 128 +l +a++kalk+an++ +did +++ + q i+ a a+ +iP l + + C+++ +l + l+++g krv 23726_FusoPortal_Gene_706 35 ISLAVSACQKALKNANITIDDIDCIVSASAVGiQPIPCMAAlihekiAKGTSIPALDINTTCTSFITALDTMSYLLETGRYKRV 118 567889******************9988766437666544422222267789*******************************9 PP EEEEE CS SpoVAD 129 laats 133 l +++ 23726_FusoPortal_Gene_706 119 LIVSC 123 98765 PP == domain 2 score: -1.7 bits; conditional E-value: 0.52 HHHHHHHHHTT--GGG-SEEE CS SpoVAD 57 eavkkalkkanlkkedidfll 77 + +++ l+++n+k +did+l+ 23726_FusoPortal_Gene_706 215 KMMEEFLENNNMKISDIDMLI 235 345566788888888888876 PP >> Thiolase_C Thiolase, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.6 0.0 0.00037 0.61 25 61 .. 39 75 .. 23 88 .. 0.82 2 ? 2.9 0.2 0.045 75 28 63 .. 217 251 .. 202 306 .. 0.69 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.00037 HHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHH CS Thiolase_C 25 ayaikkvlkkagltvedidlfEinEAFaaqaLavaka 61 + a +k+lk+a +t++did++ A q + ++ a 23726_FusoPortal_Gene_706 39 VSACQKALKNANITIDDIDCIVSASAVGIQPIPCMAA 75 7899****************99999988888877765 PP == domain 2 score: 2.9 bits; conditional E-value: 0.045 HHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT CS Thiolase_C 28 ikkvlkkagltvedidlfEinEAFaaqaLavakald 63 +++ l+++ ++++did++ + A a L ++ +l+ 23726_FusoPortal_Gene_706 217 MEEFLENNNMKISDIDMLIPHQASVAMPLIME-KLG 251 56778888888889988888887666655543.344 PP >> Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 1.4e-05 0.023 98 221 .. 33 150 .. 12 154 .. 0.85 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 1.4e-05 Chal_sti_synt_N 98 evlklgkeaalkalkewGrPkskithlvfvssseve.lPGadlklakklGlrpsvkrvmlyflGcygGatvlrlakdiaennkG 180 + + l+ +a++kalk+ +++i +v s+ +++ +P + +k+ +s+ + + c + t+l + + e + 23726_FusoPortal_Gene_706 33 KQISLAVSACQKALKNANITIDDIDCIVSASAVGIQpIPCMAALIHEKIAKGTSIPALDI-NTTCTSFITALDTMSYLLETGRY 115 4568999****************************86999999999***99999998887.578******************** PP Chal_sti_synt_N 181 arvlvvaseitvlgfrgPskdrlddlvGaalfGdGaaavii 221 rvl+v+++++ ++ + k+ lf dGa a i+ 23726_FusoPortal_Gene_706 116 KRVLIVSCDVASRALNPKQKESF------QLFSDGAVAFIV 150 ********988777665555443......5999***99998 PP >> Peptidase_M22 Glycoprotease family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 0.1 0.00031 0.51 34 59 .. 39 64 .. 33 127 .. 0.82 2 ? 1.5 0.0 0.11 1.9e+02 31 53 .. 211 233 .. 209 235 .. 0.90 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.00031 HHHHHHHHHHHTSTGGGEEEEEEEEE CS Peptidase_M22 34 lplieealaeaglsledldaIavtkg 59 +++ ++al++a+++++d+d+I+ ++ 23726_FusoPortal_Gene_706 39 VSACQKALKNANITIDDIDCIVSASA 64 57899****************97765 PP == domain 2 score: 1.5 bits; conditional E-value: 0.11 HHHHHHHHHHHHHHTSTGGGEEE CS Peptidase_M22 31 erllplieealaeaglsledlda 53 +++++++ee l++ +++++d+d 23726_FusoPortal_Gene_706 211 KKVPKMMEEFLENNNMKISDIDM 233 57899****************96 PP >> DUF1948 Domain of unknown function (DUF1948) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 7e-05 0.12 16 61 .. 104 149 .. 93 164 .. 0.85 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 7e-05 DUF1948 16 atlfflpktadqiqaafldydvperplndwqkeivkvfsercvefi 61 t+ +l t + ++ dv r ln qke ++fs+ +v fi 23726_FusoPortal_Gene_706 104 DTMSYLLETGRYKRVLIVSCDVASRALNPKQKESFQLFSDGAVAFI 149 4778888888888899999**************************8 PP >> USP7_ICP0_bdg ICP0-binding domain of Ubiquitin-specific protease 7 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.0 0.00014 0.24 89 141 .. 238 292 .. 228 296 .. 0.85 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00014 USP7_ICP0_bdg 89 kvsdlvpeilekaglpsdtelklyEEik..pnmieilklkqtlkkaelqdGdIic 141 ++s +p i+ek+g+p+++ ++ E + ++ l + l+k+++++GdIi 23726_FusoPortal_Gene_706 238 QASVAMPLIMEKLGVPKGKYINEVKEFGnmVSASVPMTLAHGLEKQKIKNGDIIL 292 556679***************988888632337778*****************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (310 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 702 (0.0420057); expected 334.2 (0.02) Passed bias filter: 535 (0.0320129); expected 334.2 (0.02) Passed Vit filter: 40 (0.00239349); expected 16.7 (0.001) Passed Fwd filter: 10 (0.000598372); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.26u 0.23s 00:00:00.49 Elapsed: 00:00:00.31 # Mc/sec: 2907.03 // [ok]