# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_709.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_709 [L=329] Description: # 802194 # 803180 # -1 # ID=1_709;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.264 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-35 122.7 0.0 1.8e-35 122.4 0.0 1.1 1 Epimerase NAD dependent epimerase/dehydratase family 1.5e-30 106.1 0.2 2.2e-30 105.5 0.2 1.2 1 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomeras 1e-23 84.1 0.0 1.4e-23 83.7 0.0 1.2 1 NAD_binding_10 NAD(P)H-binding 1.5e-22 79.9 0.0 1.9e-22 79.6 0.0 1.1 1 RmlD_sub_bind RmlD substrate binding domain 1.7e-19 69.9 0.1 5.4e-14 51.9 0.0 2.2 2 NAD_binding_4 Male sterility protein 2e-19 70.1 0.0 2.7e-18 66.3 0.0 2.4 1 GDP_Man_Dehyd GDP-mannose 4,6 dehydratase 2e-08 33.6 0.0 3.3e-08 32.9 0.0 1.3 1 Polysacc_synt_2 Polysaccharide biosynthesis protein 1.8e-06 27.6 0.1 3.2e-06 26.8 0.1 1.5 1 NmrA NmrA-like family 0.0014 18.4 0.0 0.0063 16.3 0.0 1.9 1 KR KR domain 0.0064 16.7 0.0 0.012 15.8 0.0 1.4 1 TrkA_N TrkA-N domain 0.0065 15.8 0.1 0.03 13.7 0.1 1.9 1 adh_short short chain dehydrogenase ------ inclusion threshold ------ 0.037 14.0 0.0 0.087 12.9 0.0 1.7 1 DapB_N Dihydrodipicolinate reductase, N-terminus Domain annotation for each model (and alignments): >> Epimerase NAD dependent epimerase/dehydratase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 122.4 0.0 1.3e-38 1.8e-35 1 240 [. 4 224 .. 4 225 .. 0.91 Alignments for each domain: == domain 1 score: 122.4 bits; conditional E-value: 1.3e-38 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSH CS Epimerase 1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedp 84 +l+tGatGf+G++++++l+++ y+v+++ r+++ ++t +e++e++++d+ + ++l ++ + ++ avih+Aa ++v +++d 23726_FusoPortal_Gene_709 4 VLLTGATGFLGKYVIDELKNNSYQVVAFGRNEKIGHTLIDENVEFYKGDIDNLDDLFKASQ--DCSAVIHAAALSTVWGKWKD- 84 699****************************999999999999*************99988..8*********9999887776. PP HHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSBSSS.S.BSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEE CS Epimerase 85 adfieknlqgtlnlleaarkagvkrllflsSsevYGkdaeq.p.keettltgpl.kpnspYaaaKlageklveayaaqyglnai 165 f++ n+ gt n+++++ ++++ +l+f+sS ++Y ++q ke+++ p + + Y +K+++e+++++ +ln++ 23726_FusoPortal_Gene_709 85 --FYNVNVLGTKNVVQVCEEKNL-KLVFVSSPSIYAGAKDQlDvKEDEA---PKeNDLNYYIKSKIMAENIIKSS----KLNYM 158 ..*********************.************9988633455555...667*****************986....7888* PP EEEESEEESTTS-TTSTTSHHHHHHHHHHCTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEE CS Epimerase 166 ilrlfnlyGprngegevsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyni 240 i+r+ l+G + ++++ip+l++ ++ + l+ dg+++ d ve va a+ l+le+ ++ +++iyni 23726_FusoPortal_Gene_709 159 IIRPRGLFGVG-----DTSIIPRLLELN-KK-IGIPLFVDGKQKVDITCVENVAYALRLALEN--NQYSRQIYNI 224 ***********.....******999944.34.48*****************************..556788***9 PP >> 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 105.5 0.2 1.6e-33 2.2e-30 1 274 [. 5 247 .. 5 252 .. 0.87 Alignments for each domain: == domain 1 score: 105.5 bits; conditional E-value: 1.6e-33 3Beta_HSD 1 vvtGggGFlGrrivkeLlrleelkevrvlDlresselleelskvnvktkkvlegDvrdkekleealegvdvvihtasivdvagk 84 ++tG++GFlG++++ eL + +v ++ ++++ ++l nv+ + +gD+ + ++l +a ++ ++vih a+++ v gk 23726_FusoPortal_Gene_709 5 LLTGATGFLGKYVIDELKNNS--YQVVAF--GRNEKIGHTLIDENVE---FYKGDIDNLDDLFKASQDCSAVIHAAALSTVWGK 81 579*************96555..455444..4555555566666776...99*******************************5 PP 3Beta_HSD 85 leedeilevnvkGTqnvleacvkagvrvlvYtSsaevvgpnsrgdeilngdEetpyesthkdayaesKalaEklvlkangrtlk 168 + d +++vnv GT+nv++ c +++ + lv++Ss ++ + +++ l+ +E++ +++ + y +sK +aE++++++ 23726_FusoPortal_Gene_709 82 WK-D-FYNVNVLGTKNVVQVCEEKNLK-LVFVSSPSIYAG---AKDQLDVKEDEAPKENDLNYYIKSKIMAENIIKSSK----- 154 54.4.8*******************96.9*******9999...677777999999999***************998765..... PP 3Beta_HSD 169 nggrllTcaLRpagiyGegdkllvpllkkllksglalfkigekealsdrvYvgNvawahilAakaLqdpkkassiagqayfisd 252 l+ +Rp g++G gd+ + p+l +l k+ + +++ ++++d + v+Nva+a lA + q+ q y i++ 23726_FusoPortal_Gene_709 155 ----LNYMIIRPRGLFGVGDTSIIPRLLELNKKI-GIPLFVDGKQKVDITCVENVAYALRLALENNQYS-------RQIYNITN 226 ....56688*******************998876.78999999999************99997665555.......799***** PP 3Beta_HSD 253 dtPvesyedlnltllkelglel 274 d+P e ++++ + +++e+g+e 23726_FusoPortal_Gene_709 227 DEPIE-FKKILTLFFNEIGTEG 247 *****.************9875 PP >> NAD_binding_10 NAD(P)H-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.7 0.0 1e-26 1.4e-23 1 147 [. 8 166 .. 8 183 .. 0.84 Alignments for each domain: == domain 1 score: 83.7 bits; conditional E-value: 1e-26 TTTSHHHHHHHHHHHHC.T-EEEEEETTHHHCHHHHCTTTCEEEE--TT.CCHHHHHHTT-SEEEES-......--TCC..HHH CS NAD_binding_10 1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsal......ggggk..dee 76 GAtG G+++++el +++ ++v+a+ Rn++ + l +e++e +gd+ + +dl +a ++++aV+ a+ g+ ++ + 23726_FusoPortal_Gene_709 8 GATGFLGKYVIDELKNNS-YQVVAFGRNEKIGHTLI-DENVEFYKGDIDNLDDLFKASQDCSAVIHAAalstvwGKWKDfyN-- 87 9****************6.***********999999.6*****************************977666443333551.. PP H....HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHH.....CCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE CS NAD_binding_10 77 g....aknivdaakaagvkRfvlvssigvgdevpgefgewnke.....llkaylaakraaeellrasgldyTivrpggLt 147 + +kn+v+++++++ ++v+vss ++ ++++++ +e l++y++ k ae+++++s+l+y i+rp gL 23726_FusoPortal_Gene_709 88 VnvlgTKNVVQVCEEKNL-KLVFVSSPSIYAGAKDQLDVKEDEapkenDLNYYIKSKIMAENIIKSSKLNYMIIRPRGLF 166 35567************9.79999*9999887777766543322222289999***********************9996 PP >> RmlD_sub_bind RmlD substrate binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.6 0.0 1.4e-25 1.9e-22 1 222 [. 2 234 .. 2 251 .. 0.85 Alignments for each domain: == domain 1 score: 79.6 bits; conditional E-value: 1.4e-25 EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHHHHHHHHHH--SEEEE------HHHHHH CS RmlD_sub_bind 1 mkilvtGanGqlGseLakqlaeeglevlaltre...............eldltdaeavaellkeakpdvvvnaAAytavDkaEs 69 mk+l+tGa+G lG+ ++++l+++ ++v+a++r+ + d+++ + + ++ ++ +++v++aAA v 23726_FusoPortal_Gene_709 2 MKVLLTGATGFLGKYVIDELKNNSYQVVAFGRNekightlidenvefyKGDIDNLDDLFKASQD--CSAVIHAAALSTVWG--- 80 89******************************99*********996666666666666665555..899******999986... PP SHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S-TTS-.B-TTS--..--SSHHHHHHHHHHHHHHHH-SSEEEEEE-S CS RmlD_sub_bind 70 eeeaayavnaeavealAeaaaavgalLihvStDyVFdGekkrp.Yeeddet..sPlnvYGrtKlaGEqavlaagkkalivRtsw 150 + + y+vn+ +++++ +++++ + +L++vS+ ++ G+k++ +ed+++ + ln+Y ++K+ E+ +++++ +++i+R 23726_FusoPortal_Gene_709 81 KWKDFYNVNVLGTKNVVQVCEEKNLKLVFVSSPSIYAGAKDQLdVKEDEAPkeNDLNYYIKSKIMAENIIKSSKLNYMIIRPRG 164 677899*********************************99874555554422679**************************** PP EESSSSS-HHHHHHHHH.HH-SEEEEESS-EE--EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHH CS RmlD_sub_bind 151 vygekgknfvktmlrla.kereelkvvaDqlgsPTsardlAevllqllekaaeekelagvyHlanegetswle 222 ++g + + + ++l+l k +l v q T ++++A +l +le+ ++y ++n++ + + 23726_FusoPortal_Gene_709 165 LFGVGDTSIIPRLLELNkKIGIPLFVDGKQKVDITCVENVAYALRLALENNQY---SRQIYNITNDEPIEFKK 234 ****************9445779********************9999998876...46788888887665555 PP >> NAD_binding_4 Male sterility protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.0 2.6e-06 0.0036 1 28 [. 6 31 .. 6 55 .. 0.81 2 ! 51.9 0.0 3.9e-17 5.4e-14 82 207 .. 60 166 .. 34 208 .. 0.79 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 2.6e-06 EE-TTSHHHHHHHHHHHHHS-.TEEEEE CS NAD_binding_4 1 lTGaTGFLGkvLlekLLrtqpevkiyll 28 lTGaTGFLGk+++ +L +++ ++++ 23726_FusoPortal_Gene_709 6 LTGATGFLGKYVIDELKNNSY--QVVAF 31 8**************966654..55555 PP == domain 2 score: 51.9 bits; conditional E-value: 3.9e-17 HHHHHH--EEEE--SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH-- CS NAD_binding_4 82 qelaeevdviihsaAtvnfdepykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekeeklded 164 + ++ ++++ih aA ++ ++ k++++vNv+Gt++v++ +++ k+l l++vS+ ++ +g++ ++ ++ed 23726_FusoPortal_Gene_709 60 FKASQDCSAVIHAAALSTVWGKWKDFYNVNVLGTKNVVQVCEE-KNL-KLVFVSSpSIYAGAKD-QL------------DVKED 128 4567899***********************************5.566.6******988888888.44............24455 PP EEEETTTCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE CS NAD_binding_4 165 eraklkglpntYeqsKalaEklvrearrrsglpvvivRpsiit 207 e +++ n Y +sK +aE+++++ + l+ +i+Rp + 23726_FusoPortal_Gene_709 129 EAP-KENDLNYYIKSKIMAENIIKSSK----LNYMIIRPRGLF 166 544.4555699************9988....8899***97665 PP >> GDP_Man_Dehyd GDP-mannose 4,6 dehydratase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.3 0.0 1.9e-21 2.7e-18 1 331 [. 5 316 .. 5 317 .. 0.74 Alignments for each domain: == domain 1 score: 66.3 bits; conditional E-value: 1.9e-21 EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S CS GDP_Man_Dehyd 1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlykdpeaeleenlklvkgDltDssslerllaevqpdevynLAA 84 L TG +Gf G y+++ L ++ y+v+ + r+++ h ++en++++kgD+ + + l ++ +++ +v++ AA 23726_FusoPortal_Gene_709 5 LLTGATGFLGKYVIDELKNNSYQVVAFGRNEKIG------HTL------IDENVEFYKGDIDNLDDLFKASQDC--SAVIHAAA 74 78**********************9987776654......433......346899******9977777776665..8******* PP ---HHHHTTSHHCHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG.-SBS..SSSB-TTS-----SHHHHHHHHHHHHHH CS GDP_Man_Dehyd 85 qshVdvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvY.Gkvq..evpqtEttpfyPrsPYaaaKlyaewivv 165 s+V +++ +++vnvlGt ++ +++ + + +++++S+ +Y G + +v+ +E + + + Y +K++ae i++ 23726_FusoPortal_Gene_709 75 LSTVWGKWKD---FYNVNVLGTKNVVQVCEEK----NLKLVFVSSPSIYaGAKDqlDVKEDEAPKENDLNYYIKSKIMAENIIK 151 ****999997...****************875....568**********455443334445555567789*************9 PP HHHHHH---EEEEEE-EEESTTS-TTSCCCHHHHHHHHHHTTS-C-EEETTTT-EEEEEEHHHHHHHHHHHHHCSS-..--EEE CS GDP_Man_Dehyd 166 nyreayglfavngilfNhesprrgetfvtrkitraiakialgkqevlvlGnldakRdwghvkDyveamwlmlqqdkp..edyvi 247 + + +y + g f + t i+r + ++ ++ + ++++k d + v+ ++ a++l+l++++ + y+i 23726_FusoPortal_Gene_709 152 SSKLNYMIIRPRGL-F---GVG-----DTSIIPRLLELNKK--IGIPLFVDGKQKVDITCVENVAYALRLALENNQYsrQIYNI 224 88888877666553.3...333.....46778888854333..345556899********************987752266999 PP -TT-EEECHHCHHCCHHCCCHHHHHH.........................HTGGCCCEECCG--SS--SBB-B-THHHHHHH- CS GDP_Man_Dehyd 248 atgetysvrefvelaflelgkeiewegkgeeevg.............rakesgkvvvevdpkyfrptevdlllgdatkakeeLg 318 + e ++ +++++l f e+g e + + + + + r +++ +++ +r ++ +++kak+eLg 23726_FusoPortal_Gene_709 225 TNDEPIEFKKILTLFFNEIGTEGKYLKWNYNLIFllvsfleifykffRI-KKEPPITKYTLYLMRYSQ----TLNIDKAKKELG 303 ********************66544322222222333333333322211.233334444444454433....47999******* PP ---SS-HHHHHHH CS GDP_Man_Dehyd 319 Wkpkvsfeelvre 331 + pk+s+ e+v++ 23726_FusoPortal_Gene_709 304 YYPKMSILEGVKK 316 **********987 PP >> Polysacc_synt_2 Polysaccharide biosynthesis protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.9 0.0 2.4e-11 3.3e-08 1 127 [. 4 111 .. 4 114 .. 0.84 Alignments for each domain: == domain 1 score: 32.9 bits; conditional E-value: 2.4e-11 EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE- CS Polysacc_synt_2 1 vlvtGagGsiGselvrqilkekpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfha 84 vl+tGa+G +G+ +++++ k++ +++ + r+E+ +++ +e+ ++++ gd+ + + l ka + ++ +v+ha 23726_FusoPortal_Gene_709 4 VLLTGATGFLGKYVIDEL-KNNSYQVVAFGRNEKIGHTLIDEN--------VEFY----KGDIDNLDDLFKASQ--DCSAVIHA 72 89*************996.667788999****98666665554........4455....69************9..******** PP -----HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE CS Polysacc_synt_2 85 AAlKhVPlveenpleaiktNvlgtenvieaaieagvekvvliS 127 AAl V ++ + + Nvlgt+nv++++ e++ + v++S 23726_FusoPortal_Gene_709 73 AALSTV---WGKWKDFYNVNVLGTKNVVQVCEEKNLKL-VFVS 111 **9877...578999999***************99864.5555 PP >> NmrA NmrA-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.8 0.1 2.3e-09 3.2e-06 1 231 [. 4 249 .. 4 291 .. 0.78 Alignments for each domain: == domain 1 score: 26.8 bits; conditional E-value: 2.3e-09 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG......... CS NmrA 1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy......... 75 +l +GaTG +Gk+v++ l ++ ++v a R++ + ++l ++ ve+ kgd+d+ + l +a ++ +v+ + ++ 23726_FusoPortal_Gene_709 4 VLLTGATGFLGKYVIDELKNNSYQVVAFGRNE--KIGHTLIDENVEFYKGDIDNLDDLFKASQDCSAVIHAAALStvwgkwkdf 85 6899**************************96..57789******************************988776777999999 PP .S-HHHHHHHHHHHHHHHS-SEEEEEE...---GG.GT.SSS...--...-TTT.HHHHHHHHHHHHCTS-EEEEEE-EEGGG- CS NmrA 76 .skeiedgkklvdAakeaGvkhfiySs...lgddndrsnaee...pa...vphf.dsKaeieeyvralgipytfvyagffmenf 148 + ++ k++v++ e k ++ Ss ++ ++d+ +++e p+ ++ + +sK+ e+ ++++ ++y ++++ ++ 23726_FusoPortal_Gene_709 86 yNVNVLGTKNVVQVCEEKNLKLVFVSSpsiYAGAKDQLDVKEdeaPKendLNYYiKSKIMAENIIKSSKLNYMIIRPRGLFGVG 169 999************9999999885553335556655554441113311133333788888****************9999999 PP BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHHHHHHHHTTEEEEE-S.EEE-HHHHHHHHHHHHTS-EEE CS NmrA 149 lsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikilkdprklkgkriklag.ntlsgneivelfekkigktvkY 231 +++ + + ++ + l +g+ k + +e+++ + +l + ++++ +++++++ + + +++i++lf +ig + kY 23726_FusoPortal_Gene_709 170 DTSIIPRLLELNKKI--GIPLFVDGKQKVDIT-CVENVAYALRLAL-ENNQYSRQIYNITNdEPIEFKKILTLFFNEIGTEGKY 249 999999444444444..566666777555555.6688876665555.5556666666665515699999999999999988655 PP >> KR KR domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 4.5e-06 0.0063 3 147 .. 4 123 .. 3 126 .. 0.85 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 4.5e-06 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEE CS KR 3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvi 86 +l+tG++G LG+ +++ l ++ ++v ++R+ ++ ++li+ +ve+++ D+ + d++ ++ ++++ vi 23726_FusoPortal_Gene_709 4 VLLTGATGFLGKYVIDELKNNS-YQVVAFGRN---EKIGHTLID------ENVEFYKGDIDNLDDLFKASQDCS-------AVI 70 699***************8776.679999***...233333444......59**********999999999997.......8** PP E---------TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-H CS KR 87 haAgvlrdklleemtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqa 147 haA ++ + +++ ++ v G++n+ +++e+++l+ +v++SS + g++ q 23726_FusoPortal_Gene_709 71 HAAALS-------TVWGKWKDFYNVNVLGTKNVVQVCEEKNLK-LVFVSSPSIYAGAKDQL 123 **9864.......56899*********************9998.58899999999988886 PP >> TrkA_N TrkA-N domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.0 8.5e-06 0.012 7 62 .. 11 66 .. 5 101 .. 0.86 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 8.5e-06 SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGG CS TrkA_N 7 GrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiek 62 G +G+ +++eL++ ++ +vv+ ++e+ ++l +e++e+++gd + + L +a + 23726_FusoPortal_Gene_709 11 GFLGKYVIDELKNnSY-QVVAFGRNEKIGHTLIDENVEFYKGDIDNLDDLFKASQDC 66 668**********555.7****************************99999987544 PP >> adh_short short chain dehydrogenase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.7 0.1 2.1e-05 0.03 3 82 .. 4 70 .. 2 114 .. 0.76 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 2.1e-05 EEEETTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEE CS adh_short 3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLv 82 vl tGa++ +G+ + +el ++ ++vv+++r+e+ +++++e ++ ++++D+ + +++ ++ +++ +++ 23726_FusoPortal_Gene_709 4 VLLTGATGFLGKYVIDELKNNSYQVVAFGRNEKIGHTLIDE------NVEFYKGDIDNLDDLFKASQDC-------SAVI 70 99*****************************9999888877......3779999999888888887777.......3344 PP >> DapB_N Dihydrodipicolinate reductase, N-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 6.2e-05 0.087 1 74 [. 2 72 .. 2 111 .. 0.82 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 6.2e-05 EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBTSHCCHCCC-SEEEE- CS DapB_N 1 ikvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevlekadvliDF 74 +kv+++Ga+G +Gk v++ +++ +++++va r+e ++ + + e +++ k ++ ddl ++ +++ +i 23726_FusoPortal_Gene_709 2 MKVLLTGATGFLGKYVIDELKN-NSYQVVAF-GRNE-KIGHTLIDENVEFYKGDIDNLDDLFKASQDCSAVIHA 72 89*******************9.77787765.5554.5677777788888888888889998888888877765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (329 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 688 (0.041168); expected 334.2 (0.02) Passed bias filter: 445 (0.0266276); expected 334.2 (0.02) Passed Vit filter: 43 (0.002573); expected 16.7 (0.001) Passed Fwd filter: 12 (0.000718047); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 12 [number of targets reported over threshold] # CPU time: 0.28u 0.23s 00:00:00.51 Elapsed: 00:00:00.31 # Mc/sec: 3085.20 // [ok]