# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_716.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_716 [L=329] Description: # 808670 # 809656 # -1 # ID=1_716;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.298 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.3e-129 428.6 5.0 1.1e-128 428.4 5.0 1.0 1 Dak1 Dak1 domain Domain annotation for each model (and alignments): >> Dak1 Dak1 domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 428.4 5.0 6.3e-133 1.1e-128 1 305 [. 17 325 .. 17 327 .. 0.97 Alignments for each domain: == domain 1 score: 428.4 bits; conditional E-value: 6.3e-133 HHHHHH-TT.EEEETTTTEEEETT-S-TTS-EEEEEEEESSTTTTGGGBSBTSBSEEEEEEETS---HHHHHHHHHHH--SS-E CS Dak1 1 eGlvaanpe.lklleeekvvvrkkekkkgkValisgGGSGHePahagfVGkGmldaavaGevFaSPsadqilaaikavdsgkGv 83 +G+++a p+ ++ +e+e +++rk++ k +kValisgGGSGHePahag+VG Gmldaav+Ge+F+SP ad++++aikavd+gkGv 23726_FusoPortal_Gene_716 17 QGMIKAFPDkVSRVENEPIIIRKNK-KVNKVALISGGGSGHEPAHAGYVGYGMLDAAVCGEIFTSPGADKVYNAIKAVDTGKGV 99 6999*****9****99999999655.58******************************************************** PP EEEEESSHHHHHHHHHHHHHHHHTT--EEEEEE--B-SSSSSTTCSSSB--THHHHHHHHHHHHHHHT--HHHHHHHHHHHHTT CS Dak1 84 llivkNYtGDvlnfglAaekakaegikvetvvvdDDvavedseekagrRGvagtvlveKiaGaaaeegasLeevaelaekvnen 167 lli+kNY+GDv+nf++A e+a+aegi+v++vvvdDD+ave+s++++grRG+agt++v+Ki+Gaaae+g++L++++el++kv++n 23726_FusoPortal_Gene_716 100 LLIIKNYSGDVMNFEMAGEMAQAEGITVKQVVVDDDIAVENSTYTVGRRGIAGTIFVHKILGAAAEKGYDLDKLVELGNKVVKN 183 ************************************************************************************ PP EEEEEEEEE--B-TTTSSBSS---TTEEEETE-TTS---SEEEE---HHHHHHHHHHHHHH.....TT-EEEEEEEE-BSS-HH CS Dak1 168 lrsigvalsactvpgagkpsfeleedemelGvGiHgEpGvereklksadelveelleklled....kgdevvllvnglGgtsll 247 l+++g++l++ctv ++gk+sfe+++de+e+G+GiHgEpG++rek+++a+e +++l+ek+ ++ +gd++++lvnglG t+l+ 23726_FusoPortal_Gene_716 184 LKTMGMSLKPCTVFTTGKESFEIADDEVEIGLGIHGEPGTHREKMTTANEFTKKLFEKIYAEsnvqNGDRFAVLVNGLGETTLI 267 ************************************************************8556778***************** PP HHHHHHHHHHHHHHHTT-EEEEEEEESSS--TTBEEEEEEEEEE-HHHHHHHHS-EES CS Dak1 248 elyivarevaelleekgikvvrvlvGeyvTsldmaGfsitllklddellelldapvet 305 el+i+++++++ll++k i+v+++lvG+y+Tsldm Gfsi+llkld+e++ell+a+ +t 23726_FusoPortal_Gene_716 268 ELFIINNHLQDLLKDKRIEVAKTLVGNYMTSLDMGGFSISLLKLDKEMEELLNAEEDT 325 ******************************************************9887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (329 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 632 (0.0378171); expected 334.2 (0.02) Passed bias filter: 455 (0.0272259); expected 334.2 (0.02) Passed Vit filter: 22 (0.00131642); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.25u 0.23s 00:00:00.48 Elapsed: 00:00:00.31 # Mc/sec: 3085.20 // [ok]