# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_73.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_73 [L=243] Description: # 94979 # 95707 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.237 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.2e-39 133.5 0.0 9.9e-39 133.2 0.0 1.0 1 Cu-oxidase_4 Multi-copper polyphenol oxidoreductase laccase Domain annotation for each model (and alignments): >> Cu-oxidase_4 Multi-copper polyphenol oxidoreductase laccase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 133.2 0.0 5.9e-43 9.9e-39 13 229 .. 21 237 .. 16 239 .. 0.83 Alignments for each domain: == domain 1 score: 133.2 bits; conditional E-value: 5.9e-43 -B----.SSSSS-HHHHHH.HHHHHHHHTTS.G..EEE-B--SS--EEE.EE--GGCSSSS--B...-SEEEESSTTSEEEEEES CS Cu-oxidase_4 13 aslNlg.lhvgDdpeaVae.nrrrlaaalgv.r..lvlleqvHgtevvvvaeeeaakgsaeeeele.aDalvtdepgvalavltA 91 +++N++ l ++ + +V e r+ +++ +++ + +v +q+H+++vv + +++++ + +e +D+++t++++va+++ +A 23726_FusoPortal_Gene_73 21 NKFNIKiLFTKKNYGNVLEkSREEIKKDFSLqNkiMVSSHQTHSDNVVLIGDNADK------TYFEnTDGILTSNKNVAIFTKYA 99 5566653333444445544268888888777514689**********888873333......224449***************** PP SSEEEEEEETTSSEEEEEEE-HHHHHHTHHHHHHHHHCSTT.-GGGEEEEE-SB--TTT-EEEHHHHHHHHHHSGGGG...EEEE CS Cu-oxidase_4 92 DCvPvlladpkgkvvaaaHaGwrGlvagvlektveamkelgakpedilaaiGPsIgpecyeVgeevaeafeaadpeaa...aaae 173 DC++++++d+++k+++a+H+Gw+G+ ++++++++e+++ + + i ++ G I+ e+y+Vg e++e+f+++ p++ a + 23726_FusoPortal_Gene_73 100 DCLAIFIYDEESKIFGAVHSGWKGTYQEIVKRAIEKINP--KNLSTINILFGIGISCENYKVGVEFYEEFRNKFPKEIvekAFSI 182 *************************************87..7889999999********************99998876654445 PP ETTEEEE-HHHHHHHHHHHTT-..SEEEE---BTTT-TTT---HHHHSH.---EEEE CS Cu-oxidase_4 174 eegkaylDLaalarlqLeeaGvkeenieasglCTvceedrfFSyRrdgg.tGrmaal 229 +++ y++ + ++ L++ Gvke++i ++ CT++e +f+S+Rrd++ +Gr a+ 23726_FusoPortal_Gene_73 183 KDDDFYFNNQLFNYYLLKDYGVKEDKIFLNNRCTFKE--NFHSFRRDKElSGRNGAI 237 555558*****************************54..5*******989***9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (243 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 789 (0.0472116); expected 334.2 (0.02) Passed bias filter: 373 (0.0223193); expected 334.2 (0.02) Passed Vit filter: 32 (0.00191479); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.24u 0.23s 00:00:00.47 Elapsed: 00:00:00.30 # Mc/sec: 2354.70 // [ok]