# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_746.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_746 [L=227] Description: # 840271 # 840951 # 1 # ID=1_746;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.291 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-28 99.2 0.0 2.7e-28 98.8 0.0 1.1 1 Cyclase Putative cyclase Domain annotation for each model (and alignments): >> Cyclase Putative cyclase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.8 0.0 1.6e-32 2.7e-28 1 135 [. 10 169 .. 10 170 .. 0.85 Alignments for each domain: == domain 1 score: 98.8 bits; conditional E-value: 1.6e-32 Cyclase 1 idLshplsedtpvwedp.......................islsehtGTHlDapgHfae..ktideipleelvgpavvldvskk 59 id+s+ +++++p+ + + is ++htGTH+Dap+H+ + +i++++ l+gpavv+++ 23726_FusoPortal_Gene_746 10 IDISYIVKNKMPADP-AlklptleffsnegvngqlhnlevISYCPHTGTHMDAPFHIDTngDSIEKLDPTLLIGPAVVVSLDYS 92 799999999996553.033456788889999999999999****************988888******************9443 PP Cyclase 60 aaaedyeiitaedleaalakqgveikpgdivlirTgwskrl.edkeky...rnpglseeaaewlaekgvkavGiDtlsvD 135 + + + +ita+ +++++ k+++ei++gd+vl++Tg+sk++ ++ke+y ls + a+++++kgv+ vG++ +svD 23726_FusoPortal_Gene_746 93 D-R-RPCVITADIIKKWE-KSNIEIQKGDAVLLNTGHSKYWeSGKEEYiekGYVCLSTDLAKYFVDKGVRFVGLESISVD 169 2.2.33468*******96.5567******************988899985333889***********************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (227 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 287 (0.0171733); expected 334.2 (0.02) Passed bias filter: 272 (0.0162757); expected 334.2 (0.02) Passed Vit filter: 19 (0.00113691); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.23u 0.24s 00:00:00.47 Elapsed: 00:00:00.31 # Mc/sec: 2128.70 // [ok]