# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_747.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_747 [L=88] Description: # 841003 # 841266 # 1 # ID=1_747;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.1e-20 71.5 0.0 9.4e-20 71.3 0.0 1.0 1 FAD_oxidored FAD dependent oxidoreductase ------ inclusion threshold ------ 0.044 12.9 0.0 0.045 12.9 0.0 1.1 1 Peptidase_S8 Subtilase family 0.075 12.7 0.1 0.12 12.0 0.1 1.3 1 Ribosomal_S21 Ribosomal protein S21 Domain annotation for each model (and alignments): >> FAD_oxidored FAD dependent oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.3 0.0 1.7e-23 9.4e-20 355 419 .. 6 70 .. 2 83 .. 0.85 Alignments for each domain: == domain 1 score: 71.3 bits; conditional E-value: 1.7e-23 FAD_oxidored 355 eveakgpYqIPyrsLvPkrveNLlvagRciSathiafgsiRvepvcmalGqAaGvaAalaleegv 419 eve++++++IP+++L + ++eNL agR +S++ +af++iRv+++c+a+G+AaGvaAa+ + +g 23726_FusoPortal_Gene_747 6 EVESGSYFDIPLGALQSINIENLYGAGRIVSSDEVAFAAIRVMGTCFATGHAAGVAAAYQALNGN 70 6788999***************************************************9544433 PP >> Peptidase_S8 Subtilase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 8e-06 0.045 243 277 .. 46 80 .. 15 85 .. 0.84 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 8e-06 EE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF Peptidase_S8 243 smsGTSmAsPnaagaaAlllsalpkltpetvraal 277 + GT +A+ +aag+aA + + + e++r+ l 23726_FusoPortal_Gene_747 46 RVMGTCFATGHAAGVAAAYQALNGNVDREKIREEL 80 677********************999999999866 PP >> Ribosomal_S21 Ribosomal protein S21 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.1 2.1e-05 0.12 10 33 .. 60 83 .. 56 85 .. 0.93 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 2.1e-05 Ribosomal_S21 10 lerALkrfkrkvekagvirevrrr 33 +++A++ ++ v++++++ e++r+ 23726_FusoPortal_Gene_747 60 VAAAYQALNGNVDREKIREELKRQ 83 789********************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (88 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 394 (0.0235759); expected 334.2 (0.02) Passed bias filter: 311 (0.0186094); expected 334.2 (0.02) Passed Vit filter: 24 (0.00143609); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.22u 0.24s 00:00:00.46 Elapsed: 00:00:00.31 # Mc/sec: 825.22 // [ok]