# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_763.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_763 [L=108] Description: # 863432 # 863755 # -1 # ID=1_763;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.259 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-16 61.0 0.5 1.4e-16 60.7 0.5 1.1 1 DDE_Tnp_1_6 Transposase DDE domain 0.00018 21.1 0.2 0.00022 20.8 0.2 1.2 1 DDE_Tnp_1 Transposase DDE domain ------ inclusion threshold ------ 0.04 13.7 0.2 0.067 13.0 0.1 1.5 2 PAS_6 YheO-like PAS domain Domain annotation for each model (and alignments): >> DDE_Tnp_1_6 Transposase DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.7 0.5 2.5e-20 1.4e-16 47 124 .. 11 88 .. 2 89 .. 0.93 Alignments for each domain: == domain 1 score: 60.7 bits; conditional E-value: 2.5e-20 DDE_Tnp_1_6 47 kgrkltirpeleelaekarerikseegkaeykkRsitvEgvfaqikenlglrrfrlrGlkkvklqvllvalalNlkkl 124 +++ ++++ e+++l++k++++i+s+ gk+++++Rsi+vEg+fa +ke+++lr++++rG++++k ++ l+++a+N++k+ 23726_FusoPortal_Gene_763 11 NRKIIKYNNEFRRLSKKSKDNIESDLGKQLRMNRSIQVEGAFAVLKEDMKLRKLKVRGKNSTKREIGLFCIAYNFNKY 88 4556788999******************************************************************97 PP >> DDE_Tnp_1 Transposase DDE domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.8 0.2 3.9e-08 0.00022 175 214 .] 46 85 .. 2 85 .. 0.82 Alignments for each domain: == domain 1 score: 20.8 bits; conditional E-value: 3.9e-08 DDE_Tnp_1 175 wqiErvFkwlkrkfgldrlryrglnrveaqllllllalnl 214 +q+E F+ lk +++l++l++rg+n +++++ l ++a+n+ 23726_FusoPortal_Gene_763 46 IQVEGAFAVLKEDMKLRKLKVRGKNSTKREIGLFCIAYNF 85 79*************************************7 PP >> PAS_6 YheO-like PAS domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 0.1 1.2e-05 0.067 42 110 .. 25 89 .. 5 94 .. 0.70 2 ? -0.8 0.0 0.22 1.2e+03 9 27 .. 87 105 .. 85 106 .. 0.79 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 1.2e-05 PAS_6 42 tgRkvGdpltdlvlellkeeeeeeedvlvnyktktkdgkilksstifirdekgkliglLCiNldiskle 110 ++++ ++ +dl+ +l ++ + ++++ ++ k++ +l+ + ++++++ igl+Ci ++++k+ 23726_FusoPortal_Gene_763 25 SKKSKDNIESDLGKQLRMNR----SIQVEGAFAVLKEDMKLRKLKVRGKNSTKREIGLFCIAYNFNKYL 89 44444444444444333333....3357788899999999************************99986 PP == domain 2 score: -0.8 bits; conditional E-value: 0.22 PAS_6 9 eglaellgencEvvlhdle 27 + la+l ++ vvlh l+ 23726_FusoPortal_Gene_763 87 KYLAKLSRKKQGVVLHPLK 105 5688888888999999886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (108 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 549 (0.0328506); expected 334.2 (0.02) Passed bias filter: 297 (0.0177717); expected 334.2 (0.02) Passed Vit filter: 24 (0.00143609); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.21u 0.24s 00:00:00.44 Elapsed: 00:00:00.30 # Mc/sec: 1046.53 // [ok]