# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_765.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_765 [L=333] Description: # 865341 # 866339 # 1 # ID=1_765;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.292 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-110 367.8 5.4 4.3e-110 367.7 5.4 1.0 1 FA_synthesis Fatty acid synthesis protein Domain annotation for each model (and alignments): >> FA_synthesis Fatty acid synthesis protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 367.7 5.4 2.6e-114 4.3e-110 1 322 [. 1 323 [. 1 324 [. 0.99 Alignments for each domain: == domain 1 score: 367.7 bits; conditional E-value: 2.6e-114 XEEEEESS-STTTTHHHHHHHHHHHHH-TTEEEEEEE-HHHHHTT--S..--TT.EEEEE--B---TTS-HHHHHHH-TTBHHH CS FA_synthesis 1 vkiavdamGgdhgpeevvkgvelaakeaddleivlvGdkeeiepllkkeeeakskleivhaedviemeekpvaavrkkkdssma 84 +kia+dam gd++p +vkg++ a++e ++l+++lvG++ i+++lkk + + +++ei +a++vi m+++pv+avr+kkdssm+ 23726_FusoPortal_Gene_765 1 MKIALDAMSGDFAPISTVKGAIEALEEIEGLQVILVGKEGIIKEELKKYKYDTNRIEIKNADEVIVMTDDPVKAVREKKDSSMN 84 89**********************************************7788899***************************** PP HHHHHHHTTS-SEEEE-S-HHHHHHHHHHCT-B-TT-SS-EEE-EE--TT.S-EEEE-SSS-TT--HHHHHHHHHHHHHHHHHT CS FA_synthesis 85 valelvkegeadalvsaGntgAlmalallrlgrikgierpalavllPtvs.gktvlLDvganvdckpkeLvqfalmGsvyaesv 167 v ++lvke+ a+a vs+GntgAl+a ++l+l+rikg+ rpa+avl+P+++ + t+ LD+gan d kp+ L qfa mGs y e 23726_FusoPortal_Gene_765 85 VCIDLVKEKLAQASVSCGNTGALLASSQLKLKRIKGVLRPAIAVLFPNKKdSGTLFLDLGANSDSKPEFLNQFATMGSKYMEIF 168 **************************************************66******************************** PP S--SS-EEEEEESSSSTT-SSHHHHHHHHHHHT-TTSEEEEEEEGGGCCCTS-SEEE--HHHHHHHHHHHHHHHHHHHHHHHHH CS FA_synthesis 168 lgvdsprvglLniGeeevkgndlvkqtfellkaiesieflGnvegrdildgkvdvivcdgftgNvilktaegvakavksllkee 251 +g ++p+v+lLniGeee kgn+l+++t+ llk+++ i f+Gn+e+ i++g vdv+v+dg+tgN+ lkt+eg++k++++++ke 23726_FusoPortal_Gene_765 169 SGKKNPKVALLNIGEEETKGNELTRETYTLLKENKDIDFYGNIESTKIMEGDVDVVVTDGYTGNILLKTSEGIGKFIFHIVKES 252 ************************************************************************************ PP HTTT----------HHCHHHHHHHH-GGGC--EEEETBSS-EEE--TT--HHHHHHHHHHHHHHHHTTHHH CS FA_synthesis 252 lkkslasklgalllskalkrlkkkldykeyggavllGlkgvvikshgkankkaikaaIrqakelvetqvis 322 + +s+ sklgall+++a+k++kkk++ +eygga++lGl+++ k+hg+++++aik+a+++a++++e ++i+ 23726_FusoPortal_Gene_765 253 IMESWISKLGALLVKGAMKKVKKKTEASEYGGAIFLGLSELSLKAHGNSDSRAIKNALKVASKFIELNFIE 323 *******************************************************************9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (333 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 795 (0.0475706); expected 334.2 (0.02) Passed bias filter: 525 (0.0314146); expected 334.2 (0.02) Passed Vit filter: 43 (0.002573); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.26u 0.23s 00:00:00.49 Elapsed: 00:00:00.30 # Mc/sec: 3226.81 // [ok]