# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_785.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_785 [L=38] Description: # 882242 # 882355 # 1 # ID=1_785;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.211 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.051 13.7 0.4 0.06 13.5 0.4 1.3 1 DUF2283 Protein of unknown function (DUF2283) Domain annotation for each model (and alignments): >> DUF2283 Protein of unknown function (DUF2283) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.4 3.6e-06 0.06 31 46 .. 18 33 .. 1 34 [. 0.82 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 3.6e-06 DUF2283 31 ilDfdedGrlvGIEiL 46 ++D++ G+l+GIEiL 23726_FusoPortal_Gene_785 18 NVDISSLGKLLGIEIL 33 89*************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (38 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 248 (0.0148396); expected 334.2 (0.02) Passed bias filter: 192 (0.0114888); expected 334.2 (0.02) Passed Vit filter: 11 (0.00065821); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.20u 0.24s 00:00:00.44 Elapsed: 00:00:00.31 # Mc/sec: 356.35 // [ok]