# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_786.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_786 [L=541] Description: # 882372 # 883994 # 1 # ID=1_786;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.209 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.14 11.8 2.3 0.48 10.1 2.3 1.9 1 PMP1_2 ATPase proteolipid family 0.91 9.6 16.6 3.4 7.7 7.4 2.9 2 DUF4304 Domain of unknown function (DUF4304) Domain annotation for each model (and alignments): >> PMP1_2 ATPase proteolipid family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 2.3 5.7e-05 0.48 8 29 .. 271 293 .. 268 296 .. 0.86 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 5.7e-05 PMP1_2 8 GGv.iLvFvLvGLACvAivltil 29 GG+ iL F+++G+AC+ i i+ 23726_FusoPortal_Gene_786 271 GGIeILFFIVMGIACILITYFII 293 66659***********9988776 PP >> DUF4304 Domain of unknown function (DUF4304) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 1.4 0.0011 9.3 23 87 .. 87 163 .. 81 182 .. 0.73 2 ? 7.7 7.4 0.00041 3.4 13 103 .. 366 450 .. 360 481 .. 0.76 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.0011 DUF4304 23 glievvnlQksrfg..rdedaFyinigvaikelpdlitnelqikepkeydcdlrtriepll..........lgkdkl 87 ++++++n s ++++Fy+ +ai+++ + + n ++ik ++++ +++ r+++ + ++k +l 23726_FusoPortal_Gene_786 87 KIYKICNYFLSEEKiiISDEHFYYTRKLAIINFEKFEINLNEIKRITKIPMKIPNRFSTNIpalatlwyfkEQKRIL 163 566666666664444556899******************99***9***************95555555555444444 PP == domain 2 score: 7.7 bits; conditional E-value: 0.00041 DUF4304 13 kgktfyrkrdglievvnlQksrfgrdedaFyinigvaikelpdlitnelqike...pkeydcdlrtrieplllgkdklwslyne 93 k+ + + k+ + +ev+n++k+ ++ +F+ n ++ ++i n +ik+ e+++++++ +e ++ +++l++ 23726_FusoPortal_Gene_786 366 KRIHIRLKNGKGYEVCNFSKNPYN---YDFFRNTNKVLEMEFKEIFN--NIKSfieNGEIKYNFEKQLEEIK----SNYNLEKS 440 55566667777*************...******************97..55555587799999999999999....34444444 PP DUF4304 94 qeqeelleev 103 + ++ +l+++ 23726_FusoPortal_Gene_786 441 ERYNFILNKI 450 4444333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (541 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1357 (0.0811991); expected 334.2 (0.02) Passed bias filter: 332 (0.019866); expected 334.2 (0.02) Passed Vit filter: 34 (0.00203447); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.28u 0.22s 00:00:00.50 Elapsed: 00:00:00.30 # Mc/sec: 5242.35 // [ok]