# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_791.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_791 [L=319] Description: # 888706 # 889662 # 1 # ID=1_791;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.330 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-73 246.3 8.4 4.8e-72 243.0 8.4 1.9 1 NMO Nitronate monooxygenase 1e-10 41.1 3.6 1.8e-09 37.0 3.6 2.2 1 IMPDH IMP dehydrogenase / GMP reductase domain 9.6e-10 37.9 1.0 1.6e-09 37.1 1.0 1.4 1 FMN_dh FMN-dependent dehydrogenase 1.2e-08 34.6 0.4 2.8e-08 33.4 0.4 1.6 1 His_biosynth Histidine biosynthesis protein 3e-06 26.6 2.7 4.9e-06 25.9 2.7 1.2 1 ThiG Thiazole biosynthesis protein ThiG 5.5e-05 22.4 1.4 8.9e-05 21.7 1.4 1.3 1 DHO_dh Dihydroorotate dehydrogenase 7.9e-05 21.8 0.4 0.00014 21.0 0.4 1.4 1 DUF561 Protein of unknown function (DUF561) 0.0018 17.4 8.1 0.0062 15.6 4.8 2.7 2 Glu_synthase Conserved region in glutamate synthase 0.0095 15.0 0.3 0.014 14.4 0.3 1.2 1 Dus Dihydrouridine synthase (Dus) ------ inclusion threshold ------ 0.023 14.5 0.6 0.049 13.4 0.6 1.5 1 ETF Electron transfer flavoprotein domain 0.16 11.2 1.3 0.33 10.2 0.1 2.0 2 G3P_antiterm Glycerol-3-phosphate responsive antiterminator 0.45 9.7 3.4 0.51 9.5 0.5 2.3 2 TMP-TENI Thiamine monophosphate synthase Domain annotation for each model (and alignments): >> NMO Nitronate monooxygenase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 243.0 8.4 3.4e-75 4.8e-72 4 330 .. 6 300 .. 3 301 .. 0.94 Alignments for each domain: == domain 1 score: 243.0 bits; conditional E-value: 3.4e-75 NMO 4 ltellkikppvvqpgmggiskarLaaavsnaGgLGvlasgyltaDrlakeirkvkaltdkPfgvnlflpkkdaadraekykkel 87 + e+l+ik+p++q+ m ++s+ +La+avs++GgLG++a+g + + l+++irk+ka+t++Pfgvnl+l ++d+ d+ 23726_FusoPortal_Gene_791 6 ICEILGIKYPIFQGAMAWVSGGELAGAVSKDGGLGIIAGGGMEPELLRENIRKAKAITTNPFGVNLMLLRPDVEDQ-------- 81 6799************************************************************************........ PP NMO 88 eeaalelnieegvrfyrkvevvldekvevvsfgfglpteevvarlkeagvvliptissvkearkvearGaDalivqGpeaGGhq 171 +++ ieegv+ v+ +g+g p +++lk+a++ +ip+i +vk a +e+ GaDa+iv+G+e+GGh 23726_FusoPortal_Gene_791 82 ----MNVCIEEGVK--------------VITTGAGNP-GAFMEKLKAANIKVIPVIPTVKLAERMEKIGADAVIVEGMESGGHV 146 ....8999*****9..............899999988.88899***************************************** PP NMO 172 GtpevgdkglfaLvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesdakdahkkklleaklddteltsav 255 G ++aL+pqv++av+iPviAaGGi +++ aaLa+GA+g+q gt fL +ke+ ++ k+ +l+ak t +t 23726_FusoPortal_Gene_791 147 G--TL---TTMALLPQVVNAVNIPVIAAGGIASGKQFLAALAMGAEGIQCGTIFLTAKECLIHQNYKNIILKAKDRSTTVTGTS 225 *..33...48************************************************************************** PP NMO 256 sGrpaRalatelleeleeakiatlalpe.ahelakkiraalveagnteegllwagqgidrldkiisvkeLiesLve 330 G p R++ ++l +e+ e + ++ +e ++ ++ +r a+ ++ + e g++++gq++ +++++ + ke++e L++ 23726_FusoPortal_Gene_791 226 TGHPVRVIENKLAKEMIELERSGAPKEEiEKLGTGSLRLAVIDG-DVERGSFMSGQVAAMVNDERTTKEILEFLMN 300 **************9988666666655515566778********.**************************99876 PP >> IMPDH IMP dehydrogenase / GMP reductase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.0 3.6 1.3e-12 1.8e-09 27 245 .. 6 201 .. 2 215 .. 0.82 Alignments for each domain: == domain 1 score: 37.0 bits; conditional E-value: 1.3e-12 SSSSEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SS.S-HHHHHHHHHHHHTSTT--B-TTS-B-EEEEE-TTTTHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF IMPDH 27 ltkkiklniPlvsaamdtvtesemAialareGgigvihkn.lsieeqaeevkkvkrspnaakdekgrllvgaavgvkedalerv 109 +++ + ++ P+ am +v++ e+A a+++ Gg+g+i +++e e+++k k ++ g v + + d ++++ 23726_FusoPortal_Gene_791 6 ICEILGIKYPIFQGAMAWVSGGELAGAVSKDGGLGIIAGGgMEPELLRENIRKAKAITTN---PFG---VN-LMLLRPDVEDQM 82 55667899*****************************9754999*9******99944322...222...21.234678999*** PP HHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE.-SS-STTBHHHHHHSB---H CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF IMPDH 110 kaLveagvDvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkv.GiGpGsiCttrvvagvGvpq 192 + +e+gv v++ + g+ +e++k+ kv + + t + a+++ + gadav v G+ +G v+ 23726_FusoPortal_Gene_791 83 NVCIEEGVKVIT--TGAGNPGAFMEKLKAANIKV--IP----VIPTVKLAERMEKIGADAVIVeGMESGG----------HVGT 148 ********9875..77888888888877766555..33....47899*************9886666665..........5667 PP HHHHHHHHHHHTTTT-EEEEES---SHHHHHHHHHCT-SEEEESHHHHTBTTS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF IMPDH 193 ltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEs 245 lt +a ++++ ++pvia GGi + ++ Ala+Ga+ + +G ++ +E+ 23726_FusoPortal_Gene_791 149 LTTMALLPQVVNAVNIPVIAAGGIASGKQFLAALAMGAEGIQCGTIFLTAKEC 201 78888888899999*********************************999886 PP >> FMN_dh FMN-dependent dehydrogenase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.1 1.0 1.2e-12 1.6e-09 225 309 .. 119 201 .. 112 227 .. 0.87 Alignments for each domain: == domain 1 score: 37.1 bits; conditional E-value: 1.2e-12 -SHHHHHHHHHTTESEEEE--..GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHH CS FMN_dh 225 ltaedakraveaGvdgivvSN..HGGRqldgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpflyg 306 t++ a+r+ ++G+d+++v GG+ g+ +t+ Lp++v+av+ i+v++ gGi +G+ l Ala+GA+++ G fl + 23726_FusoPortal_Gene_791 119 PTVKLAERMEKIGADAVIVEGmeSGGHV--GTLTTMALLPQVVNAVN--IPVIAAGGIASGKQFLAALAMGAEGIQCGTIFLTA 198 577789999**********752267876..9***************8..******************************99988 PP HHH CS FMN_dh 307 laa 309 + 23726_FusoPortal_Gene_791 199 KEC 201 665 PP >> His_biosynth Histidine biosynthesis protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.4 0.4 2e-11 2.8e-08 149 226 .. 120 198 .. 104 200 .. 0.92 Alignments for each domain: == domain 1 score: 33.4 bits; conditional E-value: 2e-11 HHHHHHHHHHTT-SEEEEEETTTTTTSS---H.HHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTCSEEEESHHHHTT CS His_biosynth 149 avelakkleelgageilltdidrdGtlsGpdl.eltkelaeavkipviasGGvgsledlkelksegvdavivgsalyeg 226 +v+la+++e+ ga ++++ +++ G l+ ++ +av+ipvia+GG++s + + ++ ++g++++ +g++++++ 23726_FusoPortal_Gene_791 120 TVKLAERMEKIGADAVIVEGMESGGHVGTLTTmALLPQVVNAVNIPVIAAGGIASGKQFLAALAMGAEGIQCGTIFLTA 198 7899******************9998877776477*****************************************976 PP >> ThiG Thiazole biosynthesis protein ThiG # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.9 2.7 3.5e-09 4.9e-06 125 212 .. 113 200 .. 102 206 .. 0.84 Alignments for each domain: == domain 1 score: 25.9 bits; conditional E-value: 3.5e-09 EEEEEE-S-HHHHHHHHCTT-SEEEEBSSSTTS----S-H.HHHHHHHHH-SS-BEEES---SHHHHHHHHHCT-SEEEESHHH CS ThiG 125 evlpYvsdDlvlarrleevGcaavmPlaapiGsglGllnk.ealkiiieeakvPvivDAGigspsdaaqamelGadavllntav 207 +v+p + + + la+r+e++G+ av+ + G G l++ + l +++ +++Pvi Gi s ++ +a+ +Ga+++ t 23726_FusoPortal_Gene_791 113 KVIPVI-PTVKLAERMEKIGADAVIVEGMESGGHVGTLTTmALLPQVVNAVNIPVIAAGGIASGKQFLAALAMGAEGIQCGTIF 195 555544.45779***********************9876515678999999***************************998877 PP HTSSS CS ThiG 208 aeakd 212 +ak+ 23726_FusoPortal_Gene_791 196 LTAKE 200 77765 PP >> DHO_dh Dihydroorotate dehydrogenase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.7 1.4 6.4e-08 8.9e-05 183 280 .. 105 199 .. 97 213 .. 0.70 Alignments for each domain: == domain 1 score: 21.7 bits; conditional E-value: 6.4e-08 HHHHHHTECEEEE...BSEE--C.TTCCGCCCCTTSSEEEEEGGGHH.HHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHH CS DHO_dh 183 dvllelkldgiivtNttvqrlai.dlkseknvkanktGGlsGkalkd.ialkvirelykrlkkeipiIgvGGiesgeDalekie 264 ++l++ +++ i v+ t+ +++ ++ + +++ + G sG ++ + ++++ ++ + ++ ip+I+ GGi sg+ l + 23726_FusoPortal_Gene_791 105 EKLKAANIKVIPVIPTVKLAERMeKIGADAVIVE---GMESGGHVGTlTTMALLPQVVNAVN--IPVIAAGGIASGKQFLAALA 183 5666667777766666554443314444444443...4345555555145677889999999..******************** PP HTECEEEESHHHHHHG CS DHO_dh 265 aGAslvqvytalvfeg 280 GA +q +t + + 23726_FusoPortal_Gene_791 184 MGAEGIQCGTIFLTAK 199 **********886555 PP >> DUF561 Protein of unknown function (DUF561) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.0 0.4 1e-07 0.00014 134 215 .. 120 193 .. 111 216 .. 0.81 Alignments for each domain: == domain 1 score: 21.0 bits; conditional E-value: 1e-07 DUF561 134 qvkLakkLeslgvdliqteGkitsiskakkvndliekslstlastyeiskkvslPvicasGlsdvtvpl.alslgasGiGigs 215 vkLa+++e++g+d + eG +s + +l+t+a +++++v++Pvi+a G+++ l al++ga Gi g 23726_FusoPortal_Gene_791 120 TVKLAERMEKIGADAVIVEGM---ES-GGH-----VGTLTTMALLPQVVNAVNIPVIAAGGIASGKQFLaALAMGAEGIQCGT 193 699*****************2...22.122.....2356799999*****************88766552799******8886 PP >> Glu_synthase Conserved region in glutamate synthase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.1 0.12 1.7e+02 68 145 .. 16 89 .. 2 106 .. 0.68 2 ! 15.6 4.8 4.5e-06 0.0062 273 316 .. 162 205 .. 101 210 .. 0.74 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 0.12 EE---B-TTTS-HHHHHHHHHHHHHHT-B-EETTS---GGGGS-----SEEEE-TT-TT--HHHHH..H-SEEEEE---T CS Glu_synthase 68 iltsamSyGalseeahealakamnrlgtksntGEGGedeerlktakdlaikQvasgrFGvteeyLn..nakaleiklaQG 145 i ++am + + la a+++ g+ GG+++e l+++ k +++ FGv+ L+ +++++ + G 23726_FusoPortal_Gene_791 16 IFQGAMAWV-----SGGELAGAVSKDGGLGIIAGGGMEPELLRENIRK-AKAITTNPFGVNLMLLRpdVEDQMNVCIEEG 89 555555443.....3445777888877766666799999999888877.7999999***997777521345555555555 PP == domain 2 score: 15.6 bits; conditional E-value: 4.5e-06 GG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHHTT--S-- CS Glu_synthase 273 drvsliadGglktgadvvkalalGAdavgigtaalialgCimar 316 ++ +ia+Gg+ +g++ + ala+GA+ ++ gt+ l a C +++ 23726_FusoPortal_Gene_791 162 VNIPVIAAGGIASGKQFLAALAMGAEGIQCGTIFLTAKECLIHQ 205 46889***********************************9876 PP >> Dus Dihydrouridine synthase (Dus) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.3 1e-05 0.014 140 214 .. 120 193 .. 117 241 .. 0.88 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1e-05 HHHHHHHHHHTT-SEEEEESSESTTTT-GG--HHHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEEST CS Dus 140 alelakiveaaGaqaltvHgRtraqnyegtadweaIkevkqavsipviaNGdIkdaedaqaileetGadgvmigr 214 +++la+++e+ Ga+a++v g + +v +av+ipvia G+I + ++ a+l+ Ga+g+ +g 23726_FusoPortal_Gene_791 120 TVKLAERMEKIGADAVIVEGMESGGHVGTLTTMALLPQVVNAVNIPVIAAGGIASGKQFLAALAM-GAEGIQCGT 193 6899***************97666666668899999****************************9.**9998875 PP >> ETF Electron transfer flavoprotein domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.6 3.5e-05 0.049 42 109 .. 119 183 .. 104 187 .. 0.89 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 3.5e-05 S....--.THHHHGGGT-SEEEEEE-GGGSS--HHHHHHHHHHHHHHH--SEEEEESSHHHHHHHHHHH CS ETF 42 ppeaeea.lrealaamGadkvilvddpalagydaeatakalaalikkedpdlvlagataigkqvaprlA 109 p ++ l+e + + Gad vi+ ++ + +++t ++l +++++ ++ ++ ag a gkq+++ lA 23726_FusoPortal_Gene_791 119 P----TVkLAERMEKIGADAVIVEGMESGGHVGTLTTMALLPQVVNAVNIPVIAAGGIASGKQFLAALA 183 4....44599*********************************************************99 PP >> G3P_antiterm Glycerol-3-phosphate responsive antiterminator # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.1 0.1 1.5 2.1e+03 113 138 .. 105 131 .. 101 140 .. 0.54 2 ? 10.2 0.1 0.00024 0.33 130 167 .. 154 191 .. 148 195 .. 0.89 Alignments for each domain: == domain 1 score: -2.1 bits; conditional E-value: 1.5 HHHT-SEEEEESGGG.HHHHCTSTTS. CS G3P_antiterm 113 ekskpdavevlPglv.pkvikeikkel 138 ek k+ + v+P + k++++++k 23726_FusoPortal_Gene_791 105 EKLKAANIKVIPVIPtVKLAERMEKIG 131 445555566666555555555555544 PP == domain 2 score: 10.2 bits; conditional E-value: 0.00024 HHCTSTTS...EEEEESS--SHHHHHHHCTT.SSEEEE CS G3P_antiterm 130 vikeikkelkipiiaGGLietkedveealkagaiavst 167 ++ ++ ++++ip+ia+G i + ++ +al+ ga ++ + 23726_FusoPortal_Gene_791 154 LLPQVVNAVNIPVIAAGGIASGKQFLAALAMGAEGIQC 191 677889999*************************9976 PP >> TMP-TENI Thiamine monophosphate synthase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.1 0.29 4.1e+02 138 166 .. 26 54 .. 19 63 .. 0.77 2 ? 9.5 0.5 0.00037 0.51 137 175 .. 150 189 .. 120 194 .. 0.81 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 0.29 TMP-TENI 138 gleglkelaealeiPvvaiGGitlenvae 166 g e++ ++++ + ++a GG+++e + e 23726_FusoPortal_Gene_791 26 GGELAGAVSKDGGLGIIAGGGMEPELLRE 54 556677788888899********997766 PP == domain 2 score: 9.5 bits; conditional E-value: 0.00037 TMP-TENI 137 lgleglkelaealeiPvvaiGGitl.envaevleagadgv 175 +++l ++++a++iPv+a GGi ++ ++l+ ga+g+ 23726_FusoPortal_Gene_791 150 TTMALLPQVVNAVNIPVIAAGGIASgKQFLAALAMGAEGI 189 5678999****************86245566667777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (319 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 609 (0.0364409); expected 334.2 (0.02) Passed bias filter: 484 (0.0289612); expected 334.2 (0.02) Passed Vit filter: 51 (0.0030517); expected 16.7 (0.001) Passed Fwd filter: 12 (0.000718047); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 12 [number of targets reported over threshold] # CPU time: 0.28u 0.25s 00:00:00.53 Elapsed: 00:00:00.32 # Mc/sec: 2897.95 // [ok]