# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_795.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_795 [L=327] Description: # 891619 # 892599 # -1 # ID=1_795;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-85 281.7 33.3 8.9e-17 61.4 0.1 5.3 7 Ank_2 Ankyrin repeats (3 copies) 6.5e-59 195.5 16.0 2.4e-10 40.6 0.2 8.4 9 Ank_4 Ankyrin repeats (many copies) 3.3e-52 172.6 10.2 2.7e-06 27.5 0.0 9.9 10 Ank Ankyrin repeat 4e-48 155.7 3.8 2.9e-06 27.1 0.0 10.1 10 Ank_3 Ankyrin repeat 7.1e-47 156.6 5.4 1.3e-11 44.4 0.2 7.9 8 Ank_5 Ankyrin repeats (many copies) ------ inclusion threshold ------ 0.13 11.9 9.9 1.1 8.9 0.3 3.2 5 Shigella_OspC Shigella flexneri OspC protein Domain annotation for each model (and alignments): >> Ank_2 Ankyrin repeats (3 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.4 0.1 3.2e-20 8.9e-17 3 84 .] 9 100 .. 7 100 .. 0.89 2 ! 43.2 0.1 1.5e-14 4.3e-11 25 84 .] 69 133 .. 63 133 .. 0.88 3 ! 33.8 0.3 1.3e-11 3.6e-08 25 77 .. 102 159 .. 100 165 .. 0.84 4 ! 60.3 1.3 6.6e-20 1.8e-16 3 82 .. 142 230 .. 142 231 .. 0.82 5 ! 43.0 0.6 1.7e-14 4.8e-11 24 81 .. 200 262 .. 197 265 .. 0.85 6 ! 60.2 0.9 7.5e-20 2.1e-16 12 84 .] 217 298 .. 217 298 .. 0.88 7 ! 42.8 0.1 1.9e-14 5.4e-11 26 78 .. 268 325 .. 264 326 .. 0.86 Alignments for each domain: == domain 1 score: 61.4 bits; conditional E-value: 3.2e-20 Ank_2 3 lAakngnlelvklLl..egadpn..k.ngktaLhyAakngnleivklLleha.....adndgrtpLhyAarsghleivklLlek 76 A+kng++ +v+ ++ g d+n + g+taL+yA+++g+++ivklLl+++ a+n+ + pLh+ ++sg+ ei++lLl+k 23726_FusoPortal_Gene_795 9 NACKNGQKGVVEAFIkkGGLDFNkrDsLGNTALFYACMKGSKDIVKLLLSNGadgslANNNSMIPLHAVSKSGNKEIISLLLDK 92 699*99889******866688886537**********************98435577779999********************* PP Ank_2 77 gadinlkd 84 g+din++d 23726_FusoPortal_Gene_795 93 GSDINTTD 100 *****997 PP == domain 2 score: 43.2 bits; conditional E-value: 1.5e-14 Ank_2 25 ngktaLhyAakngnleivklLleha.....adndgrtpLhyAarsghleivklLlekgadinlkd 84 n + +Lh+ k+gn+ei++lLl+++ +d++grtpL+y ++++e++klLlekgad ++kd 23726_FusoPortal_Gene_795 69 NSMIPLHAVSKSGNKEIISLLLDKGsdintTDKEGRTPLIYTLMENRTEAAKLLLEKGADTQIKD 133 6689*******************84355666699**************************99987 PP == domain 3 score: 33.8 bits; conditional E-value: 1.3e-11 Ank_2 25 ngktaLhyAakngnleivklLleha.....adndgrtpLhyAarsghleivklLlekg 77 +g+t+L+y +++ +e++klLle++ dndg+ ++ yA +g +i+ lLl+++ 23726_FusoPortal_Gene_795 102 EGRTPLIYTLMENRTEAAKLLLEKGadtqiKDNDGHKAIDYATANGLRDIITLLLKNE 159 69*********************843445566**************99*******653 PP == domain 4 score: 60.3 bits; conditional E-value: 6.6e-20 Ank_2 3 lAakngnlelvklLl..egadpnk.ngktaLhyAakngnleivklLleh..a....adndgrtpLhyAarsghleivklLlekg 77 +A ng +++ lLl e++d ++ g+t+Lh A+ n++ e+v+ Ll++ + ++++g+tpL++Aa +++l iv+lLl+ g 23726_FusoPortal_Gene_795 142 YATANGLRDIITLLLknENNDNKNnSGNTPLHQACYNNQSEVVRELLKQdgIelniVNDNGNTPLIIAAIESNLLIVQLLLKAG 225 578889669******64444433359*********************9754265567799*********************88* PP Ank_2 78 adinl 82 ad ++ 23726_FusoPortal_Gene_795 226 ADAKQ 230 99865 PP == domain 5 score: 43.0 bits; conditional E-value: 1.7e-14 Ank_2 24 kngktaLhyAakngnleivklLlehaad.....ndgrtpLhyAarsghleivklLlekgadin 81 +ng+t+L++Aa++ nl iv+lLl+++ad +g+t+Lh+Aa++g++ i k Lle ga+i+ 23726_FusoPortal_Gene_795 200 DNGNTPLIIAAIESNLLIVQLLLKAGADakqrlLNGNTALHFAAENGNQYIGKALLEAGAEID 262 489***********999******975333244767*************************997 PP == domain 6 score: 60.2 bits; conditional E-value: 7.5e-20 Ank_2 12 lvklLl.egadpnk...ngktaLhyAakngnleivklLleh.a....adndgrtpLhyAarsghleivklLlekgadinlkd 84 +v+lLl +gad+++ ng+taLh+Aa+ngn i k+Lle+ a +++ g+t+L +Aa +g+ ++vklL+e+ga++n+ d 23726_FusoPortal_Gene_795 217 IVQLLLkAGADAKQrllNGNTALHFAAENGNQYIGKALLEAgAeidgQNEMGETALLIAAMEGYNDFVKLLVENGANVNIVD 298 6999*999***994579*************97777****974254667799****************************976 PP == domain 7 score: 42.8 bits; conditional E-value: 1.9e-14 Ank_2 26 gktaLhyAakngnleivklLleh.a....adndgrtpLhyAarsghleivklLlekga 78 g+taL +Aa++g++++vklL+e+ a +dn+ ++pL+yA+++g++eiv++Ll ga 23726_FusoPortal_Gene_795 268 GETALLIAAMEGYNDFVKLLVENgAnvniVDNSQNSPLFYASEKGYTEIVEILLLAGA 325 79*******************9842545677**********************96666 PP >> Ank_4 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.0 0.0 2.1e-11 6e-08 7 55 .] 9 57 .. 6 57 .. 0.95 2 ! 25.4 0.0 5.3e-09 1.5e-05 11 55 .] 47 90 .. 46 90 .. 0.95 3 ! 28.0 0.0 7.9e-10 2.2e-06 4 41 .. 73 109 .. 71 114 .. 0.95 4 ! 16.1 0.0 4.1e-06 0.011 10 55 .] 112 156 .. 110 156 .. 0.89 5 ! 23.3 0.1 2.3e-08 6.5e-05 18 55 .] 153 188 .. 150 188 .. 0.76 6 ! 40.6 0.2 8.8e-14 2.4e-10 2 55 .] 169 222 .. 168 222 .. 0.94 7 ! 25.5 0.2 4.9e-09 1.4e-05 6 47 .. 207 247 .. 206 251 .. 0.92 8 ! 27.0 0.0 1.6e-09 4.5e-06 2 46 .. 236 279 .. 235 281 .. 0.95 9 ! 35.9 0.0 2.6e-12 7.1e-09 4 55 .] 271 321 .. 271 321 .. 0.96 Alignments for each domain: == domain 1 score: 33.0 bits; conditional E-value: 2.1e-11 Ank_4 7 yaaisgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilklLl 55 +a++ g+ +v+ + k g d n++ ++ G+tal +A+++g+++i+klLl 23726_FusoPortal_Gene_795 9 NACKNGQKGVVEAFIKKgGLDFNKR-DSLGNTALFYACMKGSKDIVKLLL 57 79999************88******.999********************8 PP == domain 2 score: 25.4 bits; conditional E-value: 5.3e-09 Ank_4 11 sgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 +g ++v+lLl++gad n++ + +lh + k gn+ei+ lLl 23726_FusoPortal_Gene_795 47 KGSKDIVKLLLSNGADGSLA-NNNSMIPLHAVSKSGNKEIISLLL 90 68899***********9997.**********************98 PP == domain 3 score: 28.0 bits; conditional E-value: 7.9e-10 Ank_4 4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhi 41 +Lh+ +sg+ e++ lLl+kg din + +++G+t+l++ 23726_FusoPortal_Gene_795 73 PLHAVSKSGNKEIISLLLDKGSDINTT-DKEGRTPLIY 109 799************************.********98 PP == domain 4 score: 16.1 bits; conditional E-value: 4.1e-06 Ank_4 10 isgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 +++r+e+++lLlekgad +++G a+++A +g +i+ lLl 23726_FusoPortal_Gene_795 112 MENRTEAAKLLLEKGADTQIK-DNDGHKAIDYATANGLRDIITLLL 156 579**************6665.999************999998887 PP == domain 5 score: 23.3 bits; conditional E-value: 2.3e-08 Ank_4 18 rlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 lLl + n +n+sG+t+lh A+++++ e+++ Ll 23726_FusoPortal_Gene_795 153 TLLLKNEN--NDNKNNSGNTPLHQACYNNQSEVVRELL 188 56665522..33459*******************9886 PP == domain 6 score: 40.6 bits; conditional E-value: 8.8e-14 Ank_4 2 ltaLhyaaisgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilklLl 55 +t+Lh+a++ ++ e+vr Ll + g+++n + n++G+t+l+iAa +n+ i++lLl 23726_FusoPortal_Gene_795 169 NTPLHQACYNNQSEVVRELLKQdGIELNIV-NDNGNTPLIIAAIESNLLIVQLLL 222 89***************999766*******.*****************9999997 PP == domain 7 score: 25.5 bits; conditional E-value: 4.9e-09 Ank_4 6 hyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgn 47 aai+++l +v+lLl gad + +G+talh+Aa +gn 23726_FusoPortal_Gene_795 207 IIAAIESNLLIVQLLLKAGADAKQR-LLNGNTALHFAAENGN 247 6799*****************8888.899************7 PP == domain 8 score: 27.0 bits; conditional E-value: 1.6e-09 Ank_4 2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg 46 +taLh aa+ g+ + + Lle ga+i+ q n+ Getal iAa+ g 23726_FusoPortal_Gene_795 236 NTALHFAAENGNQYIGKALLEAGAEIDGQ-NEMGETALLIAAMEG 279 89***************************.************987 PP == domain 9 score: 35.9 bits; conditional E-value: 2.6e-12 Ank_4 4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 aL aa++g + v+lL+e+ga++n + ++s++++l +A +g+ ei++ Ll 23726_FusoPortal_Gene_795 271 ALLIAAMEGYNDFVKLLVENGANVNIV-DNSQNSPLFYASEKGYTEIVEILL 321 5789***********************.999******************997 PP >> Ank Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 0.0 0.18 5e+02 9 24 .. 10 26 .. 6 35 .. 0.76 2 ! 27.0 0.0 1.4e-09 3.8e-06 2 26 .. 37 62 .. 36 70 .. 0.90 3 ! 19.9 0.0 2.3e-07 0.00065 5 32 .] 73 101 .. 69 101 .. 0.90 4 ! 15.7 0.0 5.1e-06 0.014 2 32 .] 103 134 .. 102 134 .. 0.94 5 ? 1.7 0.1 0.14 3.8e+02 8 23 .. 142 158 .. 135 166 .. 0.65 6 ! 27.5 0.0 9.6e-10 2.7e-06 2 32 .] 168 200 .. 167 200 .. 0.91 7 ! 20.3 0.0 1.8e-07 0.00051 1 26 [. 201 227 .. 201 231 .. 0.91 8 ! 20.0 0.0 2.3e-07 0.00063 1 28 [. 234 262 .. 234 266 .. 0.89 9 ! 25.4 0.0 4.3e-09 1.2e-05 1 32 [] 267 299 .. 267 299 .. 0.95 10 ! 9.8 0.0 0.00038 1.1 3 25 .. 302 325 .. 301 326 .. 0.89 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 0.18 HHHHTTHHHHHHHH.TT CS Ank 9 AatngkkriiklLL.hG 24 A+ ng+k ++++++ +G 23726_FusoPortal_Gene_795 10 ACKNGQKGVVEAFIkKG 26 78889999******775 PP == domain 2 score: 27.0 bits; conditional E-value: 1.4e-09 SBBHHHHHHHHTTHHHHHHHH.TTTS CS Ank 2 GnTPLHlAatngkkriiklLL.hGAd 26 GnT+L +A++ g+k+i+klLL +GAd 23726_FusoPortal_Gene_795 37 GNTALFYACMKGSKDIVKLLLsNGAD 62 9********************88998 PP == domain 3 score: 19.9 bits; conditional E-value: 2.3e-07 HHHHHHHHTTHHHHHHHH.TTTSTTCBST CS Ank 5 PLHlAatngkkriiklLL.hGAdlnaldn 32 PLH + g+k+ii+lLL +G+d+n +d+ 23726_FusoPortal_Gene_795 73 PLHAVSKSGNKEIISLLLdKGSDINTTDK 101 9**98899**********88*****9995 PP == domain 4 score: 15.7 bits; conditional E-value: 5.1e-06 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBST CS Ank 2 GnTPLHlAatngkkriiklLL.hGAdlnaldn 32 G+TPL + +++ ++ +klLL +GAd +++dn 23726_FusoPortal_Gene_795 103 GRTPLIYTLMENRTEAAKLLLeKGADTQIKDN 134 9******999999********99*******98 PP == domain 5 score: 1.7 bits; conditional E-value: 0.14 HHHHHTTHHHHHHHH.T CS Ank 8 lAatngkkriiklLL.h 23 +A ng +ii lLL + 23726_FusoPortal_Gene_795 142 YATANGLRDIITLLLkN 158 444566688*****943 PP == domain 6 score: 27.5 bits; conditional E-value: 9.6e-10 SBBHHHHHHHHTTHHHHHHHH..TTTSTTCBST CS Ank 2 GnTPLHlAatngkkriiklLL..hGAdlnaldn 32 GnTPLH A++n++ +++++LL +G +ln++++ 23726_FusoPortal_Gene_795 168 GNTPLHQACYNNQSEVVRELLkqDGIELNIVND 200 9********9999********9559*****985 PP == domain 7 score: 20.3 bits; conditional E-value: 1.8e-07 TSBBHHHHHHHHTTHHHHHHHH.TTTS CS Ank 1 dGnTPLHlAatngkkriiklLL.hGAd 26 +GnTPL +Aa + ++ i++lLL GAd 23726_FusoPortal_Gene_795 201 NGNTPLIIAAIESNLLIVQLLLkAGAD 227 8*********8888********77998 PP == domain 8 score: 20.0 bits; conditional E-value: 2.3e-07 TSBBHHHHHHHHTTHHHHHHHH.TTTSTT CS Ank 1 dGnTPLHlAatngkkriiklLL.hGAdln 28 +GnT+LH Aa ng+ i k+LL GA+++ 23726_FusoPortal_Gene_795 234 NGNTALHFAAENGNQYIGKALLeAGAEID 262 8*********999999999***88**987 PP == domain 9 score: 25.4 bits; conditional E-value: 4.3e-09 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBST CS Ank 1 dGnTPLHlAatngkkriiklLL.hGAdlnaldn 32 +G T+L +Aa++g + +klL+ +GA++n++dn 23726_FusoPortal_Gene_795 267 MGETALLIAAMEGYNDFVKLLVeNGANVNIVDN 299 69********999999******99********8 PP == domain 10 score: 9.8 bits; conditional E-value: 0.00038 BBHHHHHHHHTTHHHHHHHH.TTT CS Ank 3 nTPLHlAatngkkriiklLL.hGA 25 n+PL +A+ g ++i++ LL GA 23726_FusoPortal_Gene_795 302 NSPLFYASEKGYTEIVEILLlAGA 325 79******9999*****8887897 PP >> Ank_3 Ankyrin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.1 0.0 0.0016 4.3 6 30 .. 7 31 .. 2 32 .. 0.88 2 ! 24.3 0.0 8.4e-09 2.4e-05 2 28 .. 37 62 .. 36 65 .. 0.94 3 ! 14.4 0.0 1.4e-05 0.039 5 30 .. 73 97 .. 73 98 .. 0.96 4 ! 10.2 0.0 0.00033 0.92 1 28 [. 102 128 .. 102 131 .. 0.93 5 ? 4.3 0.0 0.026 73 1 28 [. 135 162 .. 135 164 .. 0.84 6 ! 27.1 0.0 1.1e-09 2.9e-06 2 31 .] 168 197 .. 167 197 .. 0.96 7 ! 15.4 0.0 6.5e-06 0.018 1 29 [. 201 228 .. 201 230 .. 0.94 8 ! 14.3 0.0 1.5e-05 0.042 1 30 [. 234 262 .. 234 263 .. 0.87 9 ! 19.2 0.0 3.7e-07 0.001 2 31 .] 268 296 .. 267 296 .. 0.96 10 ! 8.4 0.0 0.0013 3.6 2 26 .. 301 324 .. 300 326 .. 0.89 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.0016 Ank_3 6 LhlAarsgnleivkfLlenkgadvn 30 + A+++g +v++++++ g d+n 23726_FusoPortal_Gene_795 7 FLNACKNGQKGVVEAFIKKGGLDFN 31 569***************9999998 PP == domain 2 score: 24.3 bits; conditional E-value: 8.4e-09 Ank_3 2 GetpLhlAarsgnleivkfLlenkgad 28 G+t+L++A++ g+ +ivk+Ll +gad 23726_FusoPortal_Gene_795 37 GNTALFYACMKGSKDIVKLLLS-NGAD 62 9*********************.8*99 PP == domain 3 score: 14.4 bits; conditional E-value: 1.4e-05 Ank_3 5 pLhlAarsgnleivkfLlenkgadvn 30 pLh + +sgn ei+ +Ll+ kg d+n 23726_FusoPortal_Gene_795 73 PLHAVSKSGNKEIISLLLD-KGSDIN 97 8******************.9****9 PP == domain 4 score: 10.2 bits; conditional E-value: 0.00033 Ank_3 1 nGetpLhlAarsgnleivkfLlenkgad 28 +G+tpL + ++ +++e +k+Lle kgad 23726_FusoPortal_Gene_795 102 EGRTPLIYTLMENRTEAAKLLLE-KGAD 128 59*********************.9*99 PP == domain 5 score: 4.3 bits; conditional E-value: 0.026 Ank_3 1 nGetpLhlAarsgnleivkfLlenkgad 28 +G ++ +A +g +i+ +Ll+n + d 23726_FusoPortal_Gene_795 135 DGHKAIDYATANGLRDIITLLLKNENND 162 5788999*********999999976555 PP == domain 6 score: 27.1 bits; conditional E-value: 1.1e-09 Ank_3 2 GetpLhlAarsgnleivkfLlenkgadvna 31 G+tpLh+A+ ++ e+v+ Ll++ g+++n+ 23726_FusoPortal_Gene_795 168 GNTPLHQACYNNQSEVVRELLKQDGIELNI 197 9**************************996 PP == domain 7 score: 15.4 bits; conditional E-value: 6.5e-06 Ank_3 1 nGetpLhlAarsgnleivkfLlenkgadv 29 nG+tpL +Aa nl iv++Ll+ gad 23726_FusoPortal_Gene_795 201 NGNTPLIIAAIESNLLIVQLLLK-AGADA 228 7**********************.89996 PP == domain 8 score: 14.3 bits; conditional E-value: 1.5e-05 Ank_3 1 nGetpLhlAarsgnleivkfLlenkgadvn 30 nG+t+Lh+Aa++gn i k+Lle ga+++ 23726_FusoPortal_Gene_795 234 NGNTALHFAAENGNQYIGKALLE-AGAEID 262 7*************657999999.788876 PP == domain 9 score: 19.2 bits; conditional E-value: 3.7e-07 Ank_3 2 GetpLhlAarsgnleivkfLlenkgadvna 31 Get+L +Aa+ g + vk+L+e +ga+vn+ 23726_FusoPortal_Gene_795 268 GETALLIAAMEGYNDFVKLLVE-NGANVNI 296 9*********************.8****97 PP == domain 10 score: 8.4 bits; conditional E-value: 0.0013 Ank_3 2 GetpLhlAarsgnleivkfLlenkg 26 +++pL++A + g +eiv+ Ll g 23726_FusoPortal_Gene_795 301 QNSPLFYASEKGYTEIVEILLL-AG 324 69*****************998.55 PP >> Ank_5 Ankyrin repeats (many copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.0 0.0 7.1e-05 0.2 22 55 .. 9 43 .. 6 44 .. 0.93 2 ! 14.3 0.0 1.4e-05 0.039 7 46 .. 28 67 .. 23 70 .. 0.84 3 ! 25.1 0.0 5.4e-09 1.5e-05 1 55 [. 56 109 .. 56 109 .. 0.93 4 ! 14.8 0.0 9.4e-06 0.026 27 56 .] 114 143 .. 113 143 .. 0.96 5 ! 44.4 0.2 4.6e-15 1.3e-11 1 56 [] 155 209 .. 155 209 .. 0.93 6 ! 21.6 0.1 6.8e-08 0.00019 1 44 [. 187 230 .. 187 231 .. 0.93 7 ! 26.3 0.2 2.4e-09 6.6e-06 15 56 .] 234 275 .. 232 275 .. 0.97 8 ! 19.7 0.0 2.8e-07 0.00077 1 36 [. 287 321 .. 287 326 .. 0.94 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 7.1e-05 Ank_5 22 lAakggalevvrlLl.argadlnltdsrgltaldl 55 A+k+g+ vv+ ++ + g+d n +ds g+tal + 23726_FusoPortal_Gene_795 9 NACKNGQKGVVEAFIkKGGLDFNKRDSLGNTALFY 43 59******************************955 PP == domain 2 score: 14.3 bits; conditional E-value: 1.4e-05 Ank_5 7 advnrldgggntpLhlAakggalevvrlLlargadlnltd 46 d n +d gnt+L +A+ +g+ ++v+lLl +gad l + 23726_FusoPortal_Gene_795 28 LDFNKRDSLGNTALFYACMKGSKDIVKLLLSNGADGSLAN 67 555888999*********************9999977665 PP == domain 3 score: 25.1 bits; conditional E-value: 5.4e-09 Ank_5 1 LlengpadvnrldgggntpLhlAakggalevvrlLlargadlnltdsrgltaldl 55 Ll ng ad +++++ pLh +k g+ e++ lLl+ g+d+n+td++g+t+l + 23726_FusoPortal_Gene_795 56 LLSNG-ADGSLANNNSMIPLHAVSKSGNKEIISLLLDKGSDINTTDKEGRTPLIY 109 78888.77777888999***********************************976 PP == domain 4 score: 14.8 bits; conditional E-value: 9.4e-06 Ank_5 27 galevvrlLlargadlnltdsrgltaldlA 56 ++ e+++lLl+ gad+ ++d++g a+d+A 23726_FusoPortal_Gene_795 114 NRTEAAKLLLEKGADTQIKDNDGHKAIDYA 143 7899*************************9 PP == domain 5 score: 44.4 bits; conditional E-value: 4.6e-15 Ank_5 1 LlengpadvnrldgggntpLhlAakggalevvrlLl.argadlnltdsrgltaldlA 56 Ll+n ++++ ++ gntpLh+A++++++evvr+Ll + g ln+ ++ g+t+l +A 23726_FusoPortal_Gene_795 155 LLKN--ENNDNKNNSGNTPLHQACYNNQSEVVRELLkQDGIELNIVNDNGNTPLIIA 209 5664..688899999***************************************998 PP == domain 6 score: 21.6 bits; conditional E-value: 6.8e-08 Ank_5 1 LlengpadvnrldgggntpLhlAakggalevvrlLlargadlnl 44 Ll+ + + +n + +gntpL++Aa +l +v+lLl+ gad+++ 23726_FusoPortal_Gene_795 187 LLKQDGIELNIVNDNGNTPLIIAAIESNLLIVQLLLKAGADAKQ 230 6777789**********************************987 PP == domain 7 score: 26.3 bits; conditional E-value: 2.4e-09 Ank_5 15 ggntpLhlAakggalevvrlLlargadlnltdsrgltaldlA 56 +gnt+Lh+Aa++g++ + + Ll+ ga ++ +++ g+tal +A 23726_FusoPortal_Gene_795 234 NGNTALHFAAENGNQYIGKALLEAGAEIDGQNEMGETALLIA 275 699************************************998 PP == domain 8 score: 19.7 bits; conditional E-value: 2.8e-07 Ank_5 1 LlengpadvnrldgggntpLhlAakggalevvrlLl 36 L+eng a+vn d+ n+pL +A+++g+ e+v++Ll 23726_FusoPortal_Gene_795 287 LVENG-ANVNIVDNSQNSPLFYASEKGYTEIVEILL 321 899**.*****************************9 PP >> Shigella_OspC Shigella flexneri OspC protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.7 0.2 0.00042 1.2 229 286 .. 7 61 .. 3 69 .. 0.84 2 ? -2.5 0.0 1.1 3.1e+03 266 286 .. 74 94 .. 65 99 .. 0.75 3 ? 8.9 0.3 0.00038 1.1 233 287 .. 132 193 .. 110 198 .. 0.82 4 ? -2.9 0.0 1.5 4.2e+03 269 291 .. 209 231 .. 199 232 .. 0.69 5 ? -3.1 0.1 1.7 4.7e+03 261 287 .. 267 293 .. 246 300 .. 0.61 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.00042 Shigella_OspC 229 yllskdnasykvleyfinkglvdvnkkfkkvnsgdtmldnaikskdakmidlllkyga 286 +l + +n + v+e fi+kg +d nk+ g+t l a + ++++lll +ga 23726_FusoPortal_Gene_795 7 FLNACKNGQKGVVEAFIKKGGLDFNKR---DSLGNTALFYACMKGSKDIVKLLLSNGA 61 56667788899************9976...456888888888888899*********8 PP == domain 2 score: -2.5 bits; conditional E-value: 1.1 Shigella_OspC 266 ldnaikskdakmidlllkyga 286 l ks + ++i lll +g+ 23726_FusoPortal_Gene_795 74 LHAVSKSGNKEIISLLLDKGS 94 556678999999999999986 PP == domain 3 score: 8.9 bits; conditional E-value: 0.00038 Shigella_OspC 233 kdnasykvleyfinkglvdv.......nkkfkkvnsgdtmldnaikskdakmidlllkygai 287 kdn k ++y +gl d+ +++ +k nsg+t l +a ++++++ llk+ i 23726_FusoPortal_Gene_795 132 KDNDGHKAIDYATANGLRDIitlllknENNDNKNNSGNTPLHQACYNNQSEVVRELLKQDGI 193 788899999*******999833332212234689*********************9998665 PP == domain 4 score: -2.9 bits; conditional E-value: 1.5 Shigella_OspC 269 aikskdakmidlllkygaildkk 291 a + +++lllk ga ++++ 23726_FusoPortal_Gene_795 209 AAIESNLLIVQLLLKAGADAKQR 231 44455677899******987665 PP == domain 5 score: -3.1 bits; conditional E-value: 1.7 Shigella_OspC 261 sgdtmldnaikskdakmidlllkygai 287 g+t l a ++++ll+ +ga 23726_FusoPortal_Gene_795 267 MGETALLIAAMEGYNDFVKLLVENGAN 293 466655555555566788888888885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (327 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 587 (0.0351245); expected 334.2 (0.02) Passed bias filter: 449 (0.0268669); expected 334.2 (0.02) Passed Vit filter: 45 (0.00269268); expected 16.7 (0.001) Passed Fwd filter: 6 (0.000359023); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.28u 0.24s 00:00:00.52 Elapsed: 00:00:00.31 # Mc/sec: 3066.45 // [ok]