# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_818.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_818 [L=376] Description: # 915818 # 916945 # 1 # ID=1_818;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-158 526.0 34.2 4.2e-158 525.8 34.2 1.0 1 OAD_beta Na+-transporting oxaloacetate decarboxylase beta su Domain annotation for each model (and alignments): >> OAD_beta Na+-transporting oxaloacetate decarboxylase beta subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 525.8 34.2 2.5e-162 4.2e-158 1 348 [. 22 370 .. 22 371 .. 0.99 Alignments for each domain: == domain 1 score: 525.8 bits; conditional E-value: 2.5e-162 OAD_beta 1 knlvmiliglvllyLaikkkleplllvpigfgallvNlpeaglle..gllellyegavksellplliFlgiGaltDfgpllanp 82 +n+ mil+++vl+yLai+kk+eplll+pi+fg++lvNlp agl++ g+++++ g vks+l+p+l+F+g+Ga+tDf+pl+anp 23726_FusoPortal_Gene_818 22 QNIAMILVSFVLFYLAIVKKFEPLLLLPISFGMFLVNLPLAGLMDegGVINIMSYG-VKSNLFPCLVFMGVGAMTDFSPLIANP 104 5899***************************************9998999999998.*************************** PP OAD_beta 83 kslllgaaaqlGifvtllvalllgftlkeaasigiiGgaDGptaifvasklapellgaiavaaYsYmaLvpiiqppiikllttk 166 sl+lgaaaqlGi+v+++ a+ +gft++eaa+igiiGgaDGpt+i++a++lap+ll++iavaaYsYmaL+p+iqppi+k+lttk 23726_FusoPortal_Gene_818 105 ISLILGAAAQLGIYVAFIFATQIGFTPAEAAAIGIIGGADGPTSIYIANNLAPHLLAPIAVAAYSYMALIPLIQPPIMKALTTK 188 ************************************************************************************ PP OAD_beta 167 kerkikmeklrkvskkekilfpivvtivvallvpsaapLigmlmlGnllresgvverlsktaqnellnivtillgltvgatmea 250 ker++km +lrkvsk+eki+fpi+v+++++ll+ps+apL+g+lmlGnl++esgvv+rls+taqn+++ni+ti+lgl+vga++++ 23726_FusoPortal_Gene_818 189 KERAVKMGQLRKVSKTEKIVFPIAVVLFTSLLLPSVAPLLGLLMLGNLFKESGVVQRLSDTAQNAMINIITIMLGLSVGAKADG 272 ************************************************************************************ PP OAD_beta 251 ekflkletllilvlGlvafvlstagGvllaklmnllskkkiNPliGaaGvsavPmaarvvqkvgqkedpsnflLmhamgpnvaG 334 +fl+++tl+i+++Gl+af++stagGv+l+kl+++++++kiNPliG+aGvsavPmaarv+q+vg+ke+p+nflLmhamgpnvaG 23726_FusoPortal_Gene_818 273 ATFLDISTLKIIAMGLAAFCFSTAGGVFLGKLLYIITGGKINPLIGSAGVSAVPMAARVSQTVGAKENPTNFLLMHAMGPNVAG 356 ************************************************************************************ PP OAD_beta 335 vigsavaagvllal 348 vigsavaag+++ + 23726_FusoPortal_Gene_818 357 VIGSAVAAGFFMMI 370 **********9987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (376 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 614 (0.0367401); expected 334.2 (0.02) Passed bias filter: 255 (0.0152585); expected 334.2 (0.02) Passed Vit filter: 21 (0.00125658); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.25u 0.22s 00:00:00.47 Elapsed: 00:00:00.30 # Mc/sec: 3643.48 // [ok]