# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_822.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_822 [L=420] Description: # 920745 # 922004 # 1 # ID=1_822;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-93 313.9 25.0 1.4e-93 313.4 25.0 1.2 1 Glt_symporter Sodium/glutamate symporter Domain annotation for each model (and alignments): >> Glt_symporter Sodium/glutamate symporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 313.4 25.0 8.6e-98 1.4e-93 2 367 .. 8 378 .. 7 379 .. 0.94 Alignments for each domain: == domain 1 score: 313.4 bits; conditional E-value: 8.6e-98 Glt_symporter 2 kldaletlvvailvlllGkalvkkvkfLkkfniPepvvgGlivallllllkkisglelefdas.lqdvlmlaffttiGLsanlk 84 k+d+ +tl++a+l++++G ++ k ++Lkk+++P++vvgG ++al+ lll k+ ++l+fd + +++++ +ff++ G +a+++ 23726_FusoPortal_Gene_822 8 KFDMFTTLMLAVLAIYFGDFMRKIFPILKKYCLPASVVGGTVFALISLLLFKMGIVQLDFDYKaINQLFYCIFFAASGAAASMA 91 799**********************************************************8779******************* PP Glt_symporter 85 llkkGGkvllvfllvvailiviqnlvGvslasllgldpllGllaGsislsGGhGtaaawakvladkyglqnalevalacatfGl 168 llkkGGk +++f +++ail+ +qn + + + + +++dpl+ +++Gsi ++GGhG+aa++a+++ d g+ +a+eva+a+atfGl 23726_FusoPortal_Gene_822 92 LLKKGGKLVAIFAVLAAILAACQNGMALVVGKFMNIDPLISMMTGSIPMTGGHGNAASFAPIAVDA-GAPAAIEVAIAAATFGL 174 ******************************************************************.***************** PP Glt_symporter 169 vlGGliGgPvakfLikrnklkeekeedtkeevleeafekekekrkitakslletlaliliclvvgkylsalvke......tale 246 + G ++GgP fL+kr kl+ ++ +++ + e+ e e+ + +++ ++++ ++l+ i++ +gk+++ +k+ + 23726_FusoPortal_Gene_822 175 ISGCMLGGPFGNFLVKRFKLEGST--SNEQAMGEIDAEGESGNLLVDKPNIIQAVFLMCIAIGIGKIIELGLKSiqentgWKVA 256 ******************755444..44444579999999***************************99776654445445689 PP Glt_symporter 247 lPtfvlalfvgvilrnllellk.lkkveekavdvlgdvsLslfLalalmslkllelaklalpllvillvqvvvlvlfailvtfr 329 lP++v+++f+g+++r + ++ + + v +++d++g+ sL+lf++++++++kl++l l+l l+v+l+ q v++v f++++tfr 23726_FusoPortal_Gene_822 257 LPIHVCCMFAGIVIRLIYDRKEgNHDVLYESIDIVGEFSLALFVSMSIITMKLWQLSGLGLALVVLLIAQLVLIVTFCYFLTFR 340 ****************9987651677********************************************************** PP Glt_symporter 330 llGkdYdaavlsaGflGfglGatPtaianmqavtekfg 367 llGk+Ydaav++ G++GfglGa P ++ mqav++k++ 23726_FusoPortal_Gene_822 341 LLGKNYDAAVMAVGHMGFGLGAVPVSMTTMQAVCKKYR 378 *************************************7 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (420 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1020 (0.061034); expected 334.2 (0.02) Passed bias filter: 410 (0.0245333); expected 334.2 (0.02) Passed Vit filter: 34 (0.00203447); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.28u 0.25s 00:00:00.53 Elapsed: 00:00:00.33 # Mc/sec: 3699.86 // [ok]