# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_842.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_842 [L=449] Description: # 938585 # 939931 # 1 # ID=1_842;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.290 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-54 182.8 37.1 9.5e-54 182.5 37.1 1.0 1 MFS_2 MFS/sugar transport protein 7.3e-17 61.2 32.6 7.3e-17 61.2 32.6 2.0 2 MFS_1 Major Facilitator Superfamily Domain annotation for each model (and alignments): >> MFS_2 MFS/sugar transport protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 182.5 37.1 1.1e-57 9.5e-54 7 423 .. 16 438 .. 11 440 .. 0.94 Alignments for each domain: == domain 1 score: 182.5 bits; conditional E-value: 1.1e-57 MFS_2 7 laanilsallatylliFytdvl......glsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiil 84 + ++i++ ++a ++l+Fy + + ++lv+++l v+r+vD itDp+vG+++dk + ++Grr P++ +++i+l + +i+ 23726_FusoPortal_Gene_842 16 VSYAIVDQIFAQWILYFYLPSAnsglkpFMAPVLVSIALAVSRFVDMITDPLVGFMSDKYNSKYGRRIPFVAVGTIPLILVTIA 99 67899****************999888889999*************************************************** PP MFS_2 85 lftppelsqsakfiwllatyillrvaytlfevpyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkser 168 +f+pp+ + a+f +l+++ l+ ++yt + py +l+p+++++++eR+ l+++ s++ + +++a il+++l+ + gg + 23726_FusoPortal_Gene_842 100 FFYPPTSNERASFYYLMIVGSLFFTFYTIVGAPYNALIPEIGRTPEERLNLSTWQSVFRLSYTAVAIILPGILIKMIGG-DNVL 182 ******7777********************************************************************9.9999 PP MFS_2 169 kgylaaaliialLmvlgviivvlgtkervemekkektedkekvsllemlkevfrnrallillllfllaalalgvlnalllYyft 252 g + +++++++++++g ++v++ +er++ t++ + vs+ + ++ + +n+ +++ l++ ++++ +++ l a + Yy++ 23726_FusoPortal_Gene_842 183 FGIRGMIIFLCVIVFIGLAVTVFTIRERDYS-----TGEVSNVSFKDTIGIIIKNKNFILYLFGMMFFFIGFNNLRAIMNYYVE 261 **************************99765.....9*********************************************** PP MFS_2 253 yvlg.ngsaasvfllvvtigallgiplwqylakrigkkntyilgalltivllvlvlllqpgnlllv.lvllviagfgvgm.afl 333 +++g +++++++++v++ +a++ + l k++g +++++++++++iv + ++++l++ + + +vl+ ++g+++++ af+ 23726_FusoPortal_Gene_842 262 DIMGyGKREITLVSAVLFGAAAICFYPTNKLSKKYGYRKIMLCCLAMLIVTTSMLFFLGKVFPVNFgFVLFGLIGIPLAGaAFI 345 **********************************************************44444433367777888887665899 PP MFS_2 334 lpwsmladvvdygelktGkrregvffallsfisklavgislgisgllLsaf.gy...rakasvqsaqvvlalrllfavlpavll 413 +p++ml+++ +G r eg+ f++++f+ k is++i+ ++L + + +a as +s+ ++++ +l+++ + ++ 23726_FusoPortal_Gene_842 346 FPPAMLSEISTQISEDSGARIEGISFGIQGFFMKTSFLISIVILPIILVMGnDVsviSAIASRVSKVEKAGI-YLASLSSVFFF 428 99***********************************************99887999999999999888877.67899999999 PP MFS_2 414 lvgllllvfy 423 ++++++++ y 23726_FusoPortal_Gene_842 429 IISFIFYYKY 438 9999999988 PP >> MFS_1 Major Facilitator Superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.2 32.6 8.7e-21 7.3e-17 9 325 .. 24 351 .. 16 377 .. 0.76 2 ? -1.8 3.9 0.13 1.1e+03 250 296 .. 386 432 .. 366 442 .. 0.45 Alignments for each domain: == domain 1 score: 61.2 bits; conditional E-value: 8.7e-21 MFS_1 9 alarsilgpalplalaedlg..ispseigllltlyalgaavaslplGrlsdrf....Grrr.vlllglllfalglllllf...a 82 ++a +il++ lp ++ l ++p ++++l++ ++ +++ +++G++sd++ Grr ++ +g + ++l ++++f + 23726_FusoPortal_Gene_842 24 IFAQWILYFYLP-SANSGLKpfMAPVLVSIALAVSRFVDMITDPLVGFMSDKYnskyGRRIpFVAVGTIPLILV-TIAFFyppT 105 688889999999.44444444455556666666666677************666666****999**********.888865652 PP MFS_1 83 ....sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslg.......Wrav 153 +s++ l++v+ ++ + ++ + +ali ++ +e + ++ +++ f l++ +++ +l g+l+ +g r++ 23726_FusoPortal_Gene_842 106 snerASFYyLMIVGSLFFTFY-TIVGAPYNALIPEIGRTPEERLNLSTWQSVFRLSYtAVAIILPGILIKMIGgdnvlfgIRGM 188 577788996666666666666.7**********************************9999********777766666666666 PP MFS_1 154 fyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsg..lltllplylq 235 ++l+++ ++++ ++ + r+r+ ++ e + + ++++ ++++ k++ + +l+ + ++ff++ + l + + y+ 23726_FusoPortal_Gene_842 189 IIFLCVIVFIGLA------VTVFTIRERDYSTGE---VSNVSFKDTIGIIIKNKNF--ILYLFGMMFFFIGFnnLRAIMNYYVE 261 6666666666633......333333333333333...255667888999*****88..55555555555555779999999*** PP MFS_1 236 evlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGf.glgfvf 318 + +g++ +++l++a+l+ ++ai + + +ls+++g r+++l l+ l++++ +l++l+ ++ +++ liG+ +g +f 23726_FusoPortal_Gene_842 262 DIMGYG-KREITLVSAVLFGAAAICFYPTNKLSKKYGYRKIMLCCLAMLIVTTSMLFFLGKVFPVNFGFVLFGLIGIpLAGAAF 344 ******.899999999999999999*********************************99995555555555555555555554 PP MFS_1 319 psllala 325 + a++ 23726_FusoPortal_Gene_842 345 IFPPAML 351 4444444 PP == domain 2 score: -1.8 bits; conditional E-value: 0.13 MFS_1 250 lallalvgail..allagrlsdrlgrrrrlllallllllaalglallav 296 + +l ++ +++ ++++++ r+++ ++ l++l++++++++++ 23726_FusoPortal_Gene_842 386 IVILPIILVMGndVSVISAIASRVSK--VEKAGIYLASLSSVFFFIISF 432 33333333333454455555555444..333333344444444444333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (449 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 863 (0.0516395); expected 334.2 (0.02) Passed bias filter: 277 (0.0165749); expected 334.2 (0.02) Passed Vit filter: 34 (0.00203447); expected 16.7 (0.001) Passed Fwd filter: 8 (0.000478698); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.32 # Mc/sec: 4078.93 // [ok]