# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_863.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_863 [L=309] Description: # 959992 # 960918 # 1 # ID=1_863;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.266 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-17 59.8 28.2 0.0042 17.0 0.1 10.1 10 MORN_2 MORN repeat variant ------ inclusion threshold ------ 0.03 13.6 0.5 0.046 13.0 0.1 1.7 2 U79_P34 HSV U79 / HCMV P34 0.17 12.4 0.7 0.79 10.2 0.0 2.5 3 RHS_repeat RHS Repeat Domain annotation for each model (and alignments): >> MORN_2 MORN repeat variant # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 0.6 0.094 5.2e+02 2 20 .. 60 77 .. 59 79 .. 0.83 2 ! 17.0 0.1 7.6e-07 0.0042 2 22 .] 83 103 .. 82 103 .. 0.90 3 ! 15.2 0.7 3e-06 0.017 2 20 .. 107 125 .. 106 127 .. 0.92 4 ! 9.8 0.1 0.00017 0.96 6 19 .. 134 147 .. 132 150 .. 0.87 5 ? 1.4 0.0 0.09 5e+02 5 14 .. 151 160 .. 148 164 .. 0.83 6 ? 1.9 0.1 0.063 3.5e+02 8 13 .. 172 177 .. 171 177 .. 0.91 7 ? 0.5 0.0 0.18 1e+03 8 17 .. 223 232 .. 219 234 .. 0.70 8 ! 7.6 0.0 0.0009 5 6 18 .. 239 251 .. 236 252 .. 0.82 9 ! 11.4 0.0 5.4e-05 0.3 5 16 .. 261 272 .. 258 276 .. 0.87 10 ! 4.8 0.0 0.0073 41 5 20 .. 283 298 .. 282 300 .. 0.90 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 0.094 MORN_2 2 eGeekeYyenGklkeeltY 20 +G++++ nG + +++Y 23726_FusoPortal_Gene_863 60 NGKQEYKEKNGVII-KGNY 77 699999999*9988.7777 PP == domain 2 score: 17.0 bits; conditional E-value: 7.6e-07 MORN_2 2 eGeekeYyenGklkeeltYkn 22 +G+++ Yy++Gk++ +++ n 23726_FusoPortal_Gene_863 83 DGVQEKYYPSGKIYGKINIIN 103 8***************98665 PP == domain 3 score: 15.2 bits; conditional E-value: 3e-06 MORN_2 2 eGeekeYyenGklkeeltY 20 eG+e+ YyenGk +++l Y 23726_FusoPortal_Gene_863 107 EGTETNYYENGKTLSQLDY 125 8*************99988 PP == domain 4 score: 9.8 bits; conditional E-value: 0.00017 MORN_2 6 keYyenGklkeelt 19 k YyenG l+++++ 23726_FusoPortal_Gene_863 134 KIYYENGDLLSKIE 147 89*********987 PP == domain 5 score: 1.4 bits; conditional E-value: 0.09 MORN_2 5 ekeYyenGkl 14 ++ +y +Gk 23726_FusoPortal_Gene_863 151 MTIFYSSGKK 160 789*****95 PP == domain 6 score: 1.9 bits; conditional E-value: 0.063 MORN_2 8 YyenGk 13 Y+enGk 23726_FusoPortal_Gene_863 172 YHENGK 177 *****8 PP == domain 7 score: 0.5 bits; conditional E-value: 0.18 MORN_2 8 YyenGklkee 17 y nGk+ + 23726_FusoPortal_Gene_863 223 EYKNGKPSIQ 232 5899998665 PP == domain 8 score: 7.6 bits; conditional E-value: 0.0009 MORN_2 6 keYyenGklkeel 18 +Yye+Gk++ el 23726_FusoPortal_Gene_863 239 VMYYESGKILLEL 251 68*******9775 PP == domain 9 score: 11.4 bits; conditional E-value: 5.4e-05 MORN_2 5 ekeYyenGklke 16 k YyenG+l++ 23726_FusoPortal_Gene_863 261 SKIYYENGQLMQ 272 699*******97 PP == domain 10 score: 4.8 bits; conditional E-value: 0.0073 MORN_2 5 ekeYyenGklkeeltY 20 +k Y+ G+l + tY 23726_FusoPortal_Gene_863 283 VKVYDKAGNLISDTTY 298 699*********9999 PP >> U79_P34 HSV U79 / HCMV P34 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.0 0.51 2.8e+03 55 86 .. 41 72 .. 10 74 .. 0.61 2 ? 13.0 0.1 8.2e-06 0.046 71 133 .. 163 226 .. 120 306 .. 0.86 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 0.51 U79_P34 55 iltseeasaGsltvdigideekqktlfvrGll 86 + ++ e+ G l vd + ++kq+ G++ 23726_FusoPortal_Gene_863 41 TSKNYEKRNGVLYVDNVLANGKQEYKEKNGVI 72 33444555666667766666666666555555 PP == domain 2 score: 13.0 bits; conditional E-value: 8.2e-06 U79_P34 71 gideekqktlfvrGlllfsksvtsvsqstegrer.lltvssengklqvtfvtlakvskehelkn 133 ++d+ ++ G +fs s + + e+ e+ +l + s n+ l+ +f l+ + + e kn 23726_FusoPortal_Gene_863 163 TMDKSDIAVYHENGKEVFSNSDDGIKINGEAAEKsILDMFSKNNLLKTAFYLLTSSTVQAEYKN 226 89999999***********************9999****************9999999999888 PP >> RHS_repeat RHS Repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.0 2.1 1.2e+04 1 12 [. 113 124 .. 113 130 .. 0.58 2 ? -1.8 0.0 0.83 4.6e+03 1 10 [. 136 145 .. 136 147 .. 0.87 3 ? 10.2 0.0 0.00014 0.79 1 33 [. 264 298 .. 264 300 .. 0.82 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 2.1 RHS_repeat 1 YDaaGrLtsvtd 12 Y ++G +s+ d 23726_FusoPortal_Gene_863 113 YYENGKTLSQLD 124 667777666644 PP == domain 2 score: -1.8 bits; conditional E-value: 0.83 RHS_repeat 1 YDaaGrLtsv 10 Y ++G+L+s+ 23726_FusoPortal_Gene_863 136 YYENGDLLSK 145 889****986 PP == domain 3 score: 10.2 bits; conditional E-value: 0.00014 RHS_repeat 1 YDaaGrLtsv..tdpsGrvttYtYDaqGrltt.lTd 33 Y ++G+L +v + sGr++ YD +G+l + +T+ 23726_FusoPortal_Gene_863 264 YYENGQLMQVedRNKSGRSV-KVYDKAGNLISdTTY 298 889****99985666****8.6********775555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (309 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 639 (0.038236); expected 334.2 (0.02) Passed bias filter: 320 (0.0191479); expected 334.2 (0.02) Passed Vit filter: 22 (0.00131642); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.23u 0.21s 00:00:00.44 Elapsed: 00:00:00.30 # Mc/sec: 2994.24 // [ok]