# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_876.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_876 [L=744] Description: # 976033 # 978264 # -1 # ID=1_876;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.320 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-194 646.2 0.1 8.6e-194 645.7 0.1 1.1 1 PFL-like Pyruvate formate lyase-like 5.4e-43 145.8 0.0 1.1e-42 144.8 0.0 1.6 1 Gly_radical Glycine radical 0.002 16.5 0.0 0.0093 14.3 0.0 1.9 2 DUF3029 Protein of unknown function (DUF3029) Domain annotation for each model (and alignments): >> PFL-like Pyruvate formate lyase-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 645.7 0.1 1.5e-197 8.6e-194 4 648 .] 15 602 .. 10 602 .. 0.98 Alignments for each domain: == domain 1 score: 645.7 bits; conditional E-value: 1.5e-197 HHHH...HHHCC.HT.TS-E.EE.........SHHHHHHHHHHHHCTTS.-HHHHHHHHHHHHHHHS----.-TT-SS---SSS CS PFL-like 4 rier...lkknytlyeakps.le.........lerarllteseketege.pvdirrakalakilsnlplyI.rddElIvGsqtk 72 i++ +k+nyt+y +++s le ++ ++ + ++e+e +g + +++++++ i + ++yI +d E+IvG+qt+ 23726_FusoPortal_Gene_876 15 SINVsdfIKHNYTEYLGDESfLEgptentkklWDILSGMLKIERE-KGIyDAETKTPSK---IDAYGAGYIsKDLETIVGLQTD 94 56667789************999**********************.6666*********...********************** PP STTEEE--TTTTCHHHHTT.TTTCCCSSSSTEBEECHHHHHHHHHHHHHTTTSHHHHHHHHCHHTTHHHHTSTSEE--CHGGSS CS PFL-like 73 kprkraifPegsirmlede.ldtlaereadgfeideeekkilreifpyWkgktvnegvfdaytdetkearesgiitvglpdasg 155 +p+kraifP+g++rm+e++ ++ g+++d+ +k+i+++ ++k++n+gvf+ayt+ +k+ar++g+it glpda+g 23726_FusoPortal_Gene_876 95 APLKRAIFPNGGLRMVESSlEAF-------GYKLDPTTKEIYEK-----YRKSHNAGVFSAYTPAIKAARHTGVIT-GLPDAYG 165 *******************5555.......**************.....***************************.******* PP CEEEE--HHHHHTCHHHHHHHHHHHHHHHHCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHH CS PFL-like 156 rGhiipdyervlkyGldglieeikeklakldlddpeaiekaefykaviisleavieyaeryarlaeelaeqetdpkrkaeLlei 239 rG+ii+dy+rv++yG+d+liee k+++++ d +e++e+++r +ee+ eq ++++ L+++ 23726_FusoPortal_Gene_876 166 RGRIIGDYRRVALYGVDRLIEERKREFDAYD----------------------PEEMTEDVIRDREEMFEQ---LEALKALKRM 224 *******************************......................99****************...********** PP HHHHHHTTTS--SSHHHHHHHHHHHHHHHHHHSSCCEEE-BSHHHHTHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTTB----- CS PFL-like 240 aevcgrvpskpaetfqEAiQlvwfvhlalvkesngaamslgRldqylypyyekDleeGrlteeeaqelidclwlklrevrklrs 323 a+ +g+++ +paet+qEAiQ+++f++l+++k++ngaamslg++ +l++y+e+Dl+eGr+te++aqe+id++++klr vr+lr+ 23726_FusoPortal_Gene_876 225 AAAYGFDIGRPAETAQEAIQWTYFGYLGAIKDQNGAAMSLGKTAGFLDVYIERDLKEGRITEKQAQEFIDHFIMKLRIVRFLRT 308 ************************************************************************************ PP HHHHCCCTTT--.--EEEEESB-TTSSB---HHHHHHHHHHHHH.--SSSEEEEEE-TTS-HHHHHHHHHHHHTTS--CEEEEH CS PFL-like 324 eeydelfaGydp.fqnltvGGqnedGrdavnelsyliLealenl.klpePnlsvrvskklpeeflkkaaevsrkGlgspayend 405 +eyd+lf+G dp ++++++GG+n+dG++ v+++ y++L++l+nl +pePnl++++s++lpe+ +k++ +vs++ ++s++yend 23726_FusoPortal_Gene_876 309 PEYDQLFSG-DPvWVTESIGGMNNDGKSWVTKNAYRYLNTLYNLgTAPEPNLTILWSERLPENWKKFCSKVSID-TSSLQYEND 390 *********.888*************************************************************.********* PP HHHHHHHHHTT--HHHHHTEEEETTTEEEECCCEES-SESEEEECHHHHHHHHTTTCETTTTCB-S-..----GG.G--SHHHH CS PFL-like 406 dviipallnrgvsledArdyaiaGCvepqipGkeeqffdaarinlakaLelalnnGvdektgkqvgp..ktgdvt.efksyeel 486 d+++p + ++ dy+ia+Cv+p+++Gk++qff +ar+nl+kaL++a+n+G de ++ qv p +++ +t ++++++e+ 23726_FusoPortal_Gene_876 391 DIMRP-------QFGE--DYGIACCVSPMAIGKQMQFF-GARANLPKALLYAINGGKDELKKDQVTPagQFERITsDYLDFDEV 464 *****.......4467..8*******************.***************************8889************** PP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHTSTTHHHHT--GGGT-SSEECEEEEEE-HHHHHHHHHHHHHHHTTST CS PFL-like 487 meafkkqleylvklyvealniidymhdkyapepllsalvddciergkdvgegGarynfsgpqgvGlanvaDSLsAIkklVFddk 570 +e+++k+l +l+++y++alnii+ymhdky++e+l++al+ +i+r+ ++g+ +Gl+ vaDSL+AIk+ k 23726_FusoPortal_Gene_876 465 WEKYDKMLTWLASTYIKALNIIHYMHDKYSYEALEMALHSLDIKRTEACGI------------AGLSIVADSLAAIKY----GK 532 ***************************************************............***************....** PP SS-HHHHHHHHHTTTTT-HHHHHHHHHS--TTSS-HHHHHHHHHHHHHHHHHHCTSB-TTSCEEEEEE--TTTHHHHH CS PFL-like 571 kvtleeLkealaanFegeeelrqlllnaPkYGndddevDeiakevvetfidevkkyknyrggkftaslltissnvpyg 648 + +++ + + a+++ e + +Gn+dd+ De+a++vv+tf+++++++k+yr++++t+s+lti+snv+yg 23726_FusoPortal_Gene_876 533 VRVIRD-EAGDAVDYVVE-------QPYVPFGNNDDRTDELAVKVVRTFMNKIRSHKMYRDAEPTQSVLTITSNVVYG 602 ******.***********.......67999***********************************************8 PP >> Gly_radical Glycine radical # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 144.8 0.0 2e-46 1.1e-42 1 106 [] 618 724 .. 618 724 .. 0.98 Alignments for each domain: == domain 1 score: 144.8 bits; conditional E-value: 2e-46 TTSTTSHHCCHHHCHCHHCCCCCCTSECGCETTEETTECCCCHHHHHHHCC-CCCCCCHHCCCCC.CT-SECEEEEETCCCHCC CS Gly_radical 1 lapganpmegrdkegplaslnSvakldyevaldgislnlkavpdalgkeeeerienlatlldgyf.eggfhlnvnvvsretLld 83 + pganpm+grd++g++asl+Svakl++e a+dgis++++++p++lgk+++e+ +nl+ lldgyf + g+hlnvnv+ re L+d 23726_FusoPortal_Gene_876 618 FGPGANPMHGRDTKGAVASLASVAKLPFEDANDGISYTFAITPETLGKTDDEKKNNLVGLLDGYFkQTGHHLNVNVFGRELLED 701 679**************************************************************88***************** PP CCCSCGGGCCEEEESSSSEEECC CS Gly_radical 84 AqehpekypqltiRVsGYavnFv 106 A+ehpe+ypqltiRVsGYavnF+ 23726_FusoPortal_Gene_876 702 AMEHPENYPQLTIRVSGYAVNFI 724 **********************7 PP >> DUF3029 Protein of unknown function (DUF3029) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 1.7e-06 0.0093 162 221 .. 355 413 .. 339 431 .. 0.91 2 ? -1.0 0.0 0.071 3.9e+02 315 369 .. 553 609 .. 537 616 .. 0.64 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 1.7e-06 DUF3029 162 avPNltlkydeeitpddllrkavktilecakPsiaNhkllkkelgeeygivSCYNaLplg 221 + PNlt+ + e p+++ + + k + ++ + N+ +++ ++ge+ygi+ C + +g 23726_FusoPortal_Gene_876 355 PEPNLTILWSER-LPENWKKFCSKVSIDTSSLQYENDDIMRPQFGEDYGIACCVSPMAIG 413 67*******976.8***************************************8777665 PP == domain 2 score: -1.0 bits; conditional E-value: 0.071 DUF3029 315 eryGk.deeanelgeeileklaelveetkaky.cevtegrallHaqvGissdkevtp 369 +G+ d++++el++++++++ ++++++k+ +e t+ ++ + v + +++tp 23726_FusoPortal_Gene_876 553 VPFGNnDDRTDELAVKVVRTFMNKIRSHKMYRdAEPTQSVLTITSNVVYGKKTGNTP 609 45886256899*********9999999987431444444445555555555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (744 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 453 (0.0271063); expected 334.2 (0.02) Passed bias filter: 407 (0.0243538); expected 334.2 (0.02) Passed Vit filter: 30 (0.00179512); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.38u 0.29s 00:00:00.67 Elapsed: 00:00:00.41 # Mc/sec: 5275.20 // [ok]