# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_914.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_914 [L=204] Description: # 1018559 # 1019170 # 1 # ID=1_914;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-24 86.5 0.0 3.9e-24 85.6 0.0 1.5 1 ABC_tran ABC transporter 6e-05 22.5 0.0 0.00016 21.1 0.0 1.7 1 SMC_N RecF/RecN/SMC N terminal domain 0.00012 22.2 0.2 0.00033 20.9 0.2 1.6 1 AAA_22 AAA domain 0.0028 17.7 1.1 0.0056 16.7 1.1 1.4 1 DUF87 Domain of unknown function DUF87 0.0032 17.1 0.0 0.0048 16.6 0.0 1.4 1 PRK Phosphoribulokinase / Uridine kinase family 0.0032 17.4 0.1 0.19 11.7 0.1 2.2 1 AAA_14 AAA domain 0.0051 17.2 0.1 0.011 16.1 0.0 1.6 2 AAA ATPase family associated with various cellular ------ inclusion threshold ------ 0.015 14.2 0.8 0.051 12.5 0.2 1.9 2 NB-ARC NB-ARC domain 0.018 15.3 0.1 0.036 14.4 0.1 1.6 1 RNA_helicase RNA helicase 0.023 14.5 1.3 0.03 14.1 0.2 1.7 2 RsgA_GTPase RsgA GTPase 0.024 14.3 1.3 0.068 12.8 0.5 2.0 2 AAA_29 P-loop containing region of AAA domain 0.024 15.0 0.0 0.042 14.3 0.0 1.5 1 AAA_18 AAA domain 0.026 14.3 0.2 0.029 14.2 0.2 1.3 1 ATPase_2 ATPase domain predominantly from Archaea 0.027 14.0 0.1 0.057 12.9 0.1 1.6 1 AAA_15 AAA ATPase domain 0.029 14.6 0.1 0.034 14.4 0.1 1.3 1 AAA_16 AAA ATPase domain 0.034 14.6 1.6 0.049 14.1 1.7 1.6 1 AAA_23 AAA domain 0.036 13.3 0.0 0.061 12.6 0.0 1.4 1 Mg_chelatase Magnesium chelatase, subunit ChlI 0.039 13.7 0.0 0.33 10.6 0.0 2.0 2 AAA_21 AAA domain, putative AbiEii toxin, Type IV TA s 0.047 12.5 0.2 0.072 11.9 0.2 1.2 1 Rad17 Rad17 cell cycle checkpoint protein 0.074 12.7 1.9 0.63 9.6 0.2 2.1 2 AAA_24 AAA domain 0.086 12.0 0.0 0.13 11.4 0.0 1.3 1 Zeta_toxin Zeta toxin 0.12 11.7 0.5 0.72 9.2 0.1 2.0 2 PhoH PhoH-like protein 0.13 11.8 0.5 0.18 11.3 0.5 1.5 1 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-bind 0.16 11.6 0.0 0.36 10.4 0.0 1.5 1 AAA_30 AAA domain Domain annotation for each model (and alignments): >> ABC_tran ABC transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.6 0.0 5.6e-27 3.9e-24 1 136 [. 18 150 .. 18 151 .. 0.83 Alignments for each domain: == domain 1 score: 85.6 bits; conditional E-value: 5.6e-27 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTEEGGGB-HHHCCHCEEEE-SS..--S-TTSBHHHH..H CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx..x RF ABC_tran 1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe..pqlfpeltvren..e 80 lk++sl++k ge+v+i+G++G+GKStL+k++ag lkp +G+il+dgk+l++ + +++ + q+ + +p+ ++ + e 23726_FusoPortal_Gene_914 18 LKDISLNVKSGEIVGIFGSSGCGKSTLAKIIAGILKPSKGTILVDGKELEK----EGYCSVQLIYQHpeKATNPKWKMDKIlnE 97 79***********************************************99....45556667777722444444444433544 PP HHTCHHHHHHCSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ABC_tran 81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136 ++ ++k+g+k+ t++ p++LSgG+ qr ++ ral k k l++DE t 23726_FusoPortal_Gene_914 98 GWMVDNETIKKMGIKNYWLTRW---PQELSGGELQRFCITRALGPKTKYLIADEIT 150 4445778899999999777777...9****************************88 PP >> SMC_N RecF/RecN/SMC N terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.1 0.0 2.3e-07 0.00016 25 209 .. 29 194 .. 4 201 .. 0.78 Alignments for each domain: == domain 1 score: 21.1 bits; conditional E-value: 2.3e-07 SEEEEEESTTSSHHHHHHHHHHHHTT.TSSS--HHHHCCCT--.SSSSSTTCCEEEECEEECCEE-B----BEEEEEEEETTT- CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkge 108 ++ i G+ G+GKs l i G l+ +k + l+ ke ++ ++v++++++++k+ +++++++ + + ++ 23726_FusoPortal_Gene_914 29 EIVGIFGSSGCGKSTLAKII---AG-----ILKPSKGTILVDG-KELEKEGYCSVQLIYQHPEKA---TNPKWKMDKIL--NE- 97 56789************999...44.....5999999*****8.9999*************9999...56666554333..33. PP EEEEETTEEE-HHHHHHHHHCTT--TTCS-HHHHHHHHHHHHHHHHTCS--SEEEE.CSTTTTS-H.HHHHHHHHHHH.HHCCT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxx.xxxxx RF SMC_N 109 seykingkevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyll.DeidaaLDe.knvkkvaellk.ekskn 189 +++++++++k +++ + +++LSgGe + + +++ p+ yl+ Dei LD+ ++vk+ +l+ +k+kn 23726_FusoPortal_Gene_914 98 -GWMVDNETIKKMGIKNYWLTR--WPQELSGGELQRFCI-----TRALGPKTKYLIaDEITTMLDAlTQVKIWKNLIAtAKEKN 173 .479***********9987555..5889*****874443.....3556777777655********8467888888998456778 PP SEEEEE-SSHHHHTT-.SCEE CS xxxxxxxxxxxxxxxx.xxxx RF SMC_N 190 aQfivislreemleka.dklv 209 +iv+++++ + + dk++ 23726_FusoPortal_Gene_914 174 IGMIVVTHNKFLADRIcDKII 194 ********9977665445555 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.9 0.2 4.7e-07 0.00033 6 131 .. 29 182 .. 24 189 .. 0.72 Alignments for each domain: == domain 1 score: 20.9 bits; conditional E-value: 4.7e-07 AAA_22 6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.....sskdllrellralglelka.............. 70 i+ ++G sG+GK+tl++ ++ l+ +++++++v+ ++++ s + ++++ + a 23726_FusoPortal_Gene_914 29 EIVGIFGSSGCGKSTLAKIIAGILK-------PSKGTILVDGKELEkegycSVQLIYQHPEK-------Atnpkwkmdkilneg 98 67779******************96.......477777666666652223344444444444.......333444468888888 PP AAA_22 71 .................erlsseell.ealeqalrarav...ielliiDEaqhlrseealeeLrsllnl....srkgvqliLvG 129 + +el l++ + +ra ++ li DE+ + +al++++++ nl ++k++ +i+v 23726_FusoPortal_Gene_914 99 wmvdnetikkmgiknywLTRWPQELSgGELQRFCITRALgpkTKYLIADEITTM--LDALTQVKIWKNLiataKEKNIGMIVVT 180 8888889********9966666666667777777777777777**********7..666666666666666666*******998 PP AAA_22 130 tp 131 ++ 23726_FusoPortal_Gene_914 181 HN 182 77 PP >> DUF87 Domain of unknown function DUF87 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 1.1 8e-06 0.0056 26 59 .. 31 62 .. 19 65 .. 0.80 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 8e-06 DUF87 26 lAilgsTGsGKSntvavLleellekkgatililD 59 ++i+gs+G GKS++++ +++ +l k++ ++++D 23726_FusoPortal_Gene_914 31 VGIFGSSGCGKSTLAK-IIAGIL-KPSKGTILVD 62 79**********9987.667888.6777666666 PP >> PRK Phosphoribulokinase / Uridine kinase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.0 6.9e-06 0.0048 1 38 [. 30 66 .. 30 110 .. 0.71 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 6.9e-06 PRK 1 vIgvagsSGaGkttvarklekifgrekvkaaeiegdsf 38 ++g+ gsSG+Gk+t+a+ + i++ ++ + ++g+++ 23726_FusoPortal_Gene_914 30 IVGIFGSSGCGKSTLAKIIAGILK-PSKGTILVDGKEL 66 79******************9998.4444355555444 PP >> AAA_14 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.7 0.1 0.00027 0.19 2 44 .. 28 69 .. 27 188 .. 0.66 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 0.00027 AAA_14 2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdk 44 ++i+ i G +GK+tl+k ++ l +++ ++ ++ ++ +++ 23726_FusoPortal_Gene_914 28 GEIVGIFGSSGCGKSTLAKIIAGILK-PSKGTILVDGKELEKE 69 57999************877765555.6666666666655552 PP >> AAA ATPase family associated with various cellular activities (AAA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.0 1.5e-05 0.011 3 35 .. 33 67 .. 31 106 .. 0.79 2 ? -1.9 0.0 5.7 3.9e+03 49 49 .. 165 165 .. 129 195 .. 0.58 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 1.5e-05 EESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCC CS AAA 3 lyGppGtGKTllakavakelg..vefleisgsell 35 ++G G+GK++lak +a l+ + ++g+el 23726_FusoPortal_Gene_914 33 IFGSSGCGKSTLAKIIAGILKpsKGTILVDGKELE 67 68*****************9743446778888877 PP == domain 2 score: -1.9 bits; conditional E-value: 5.7 H CS AAA 49 l 49 l 23726_FusoPortal_Gene_914 165 L 165 1 PP >> NB-ARC NB-ARC domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.2 7.3e-05 0.051 19 39 .. 28 48 .. 17 55 .. 0.85 2 ? -0.0 0.0 0.48 3.3e+02 99 140 .. 144 183 .. 121 200 .. 0.66 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 7.3e-05 SEEEEEEESTTSSHHHHHHHH CS NB-ARC 19 lgivalvGmgGvGKttlakqi 39 +iv++ G G+GK+tlak i 23726_FusoPortal_Gene_914 28 GEIVGIFGSSGCGKSTLAKII 48 579***************976 PP == domain 2 score: -0.0 bits; conditional E-value: 0.48 CCCTSEEEEEEEE-SHHHH.......HHCHTTSEEEEEESBC CS NB-ARC 99 LlrkrfllvlDDVweeedwekigvplpakenrlrvllTTRde 140 L+ +lD + + w+++ ++ ++k+ + +++ T ++ 23726_FusoPortal_Gene_914 144 LIADEITTMLDALTQVKIWKNLIATAKEKN--IGMIVVTHNK 183 444444557777777777766666655555..4445555555 PP >> RNA_helicase RNA helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.1 5.2e-05 0.036 3 23 .. 33 53 .. 31 92 .. 0.77 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 5.2e-05 RNA_helicase 3 lyGpsgeGKStlakeLakall 23 ++G+sg+GKStlak +a l 23726_FusoPortal_Gene_914 33 IFGSSGCGKSTLAKIIAGILK 53 89************9554443 PP >> RsgA_GTPase RsgA GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.2 4.3e-05 0.03 92 122 .. 20 51 .. 5 65 .. 0.80 2 ? -2.4 0.0 5.1 3.5e+03 34 52 .. 161 179 .. 149 193 .. 0.59 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 4.3e-05 HHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS RsgA_GTPase 92 elkellkd.ktsvlvGqSGvGKStLinallpe 122 +++ ++k+ +++ + G+SG GKStL + +++ 23726_FusoPortal_Gene_914 20 DISLNVKSgEIVGIFGSSGCGKSTLAKIIAGI 51 5566666669999************9998875 PP == domain 2 score: -2.4 bits; conditional E-value: 5.1 HHHHHHHHHHHTT-EEEEE CS RsgA_GTPase 34 lldrfLvlaeekgiepviv 52 + + ++++a+ek+i +++v 23726_FusoPortal_Gene_914 161 IWKNLIATAKEKNIGMIVV 179 3444555666666654443 PP >> AAA_29 P-loop containing region of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.5 9.8e-05 0.068 20 50 .. 26 56 .. 18 60 .. 0.77 2 ? -0.7 0.0 1.6 1.1e+03 36 45 .. 150 159 .. 150 164 .. 0.86 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 9.8e-05 AAA_29 20 dlkg.vtlltGpsGsGKSTllDAiqalLvpak 50 + g ++ + G sG GKSTl i+ +L p+k 23726_FusoPortal_Gene_914 26 KS-GeIVGIFGSSGCGKSTLAKIIAGILKPSK 56 43.358889***********888888887776 PP == domain 2 score: -0.7 bits; conditional E-value: 1.6 AAA_29 36 STllDAiqal 45 +T+lDA++ + 23726_FusoPortal_Gene_914 150 TTMLDALTQV 159 59****9876 PP >> AAA_18 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 0.0 6e-05 0.042 1 62 [. 31 96 .. 31 122 .. 0.76 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 6e-05 AAA_18 1 IlltGtpGvGKttlareLskrl.gf...gvnlrdvakenglllevdpealdeskrldedkldklld 62 +++ G +G+GK+tla+ ++ l + + ++ + ++g++ + ++++e+ ++k+dk+l+ 23726_FusoPortal_Gene_914 31 VGIFGSSGCGKSTLAKIIAGILkPSkgtILVDGKELEKEGYCSVQLIYQHPEKATNPKWKMDKILN 96 789***************666533364455666677777777777777677776666777766665 PP >> ATPase_2 ATPase domain predominantly from Archaea # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.2 4.2e-05 0.029 18 46 .. 26 54 .. 18 180 .. 0.77 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 4.2e-05 ATPase_2 18 epneiyfiYGpegsGKtaLlkeiienled 46 ++ ei+ i+G+ g+GK++L k i+ l+ 23726_FusoPortal_Gene_914 26 KSGEIVGIFGSSGCGKSTLAKIIAGILKP 54 5678999************9988776643 PP >> AAA_15 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.1 8.2e-05 0.057 14 140 .. 18 193 .. 17 202 .. 0.64 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 8.2e-05 AAA_15 14 lkdteidldee.ltvliGkNnsGKSsilealdlflnnkekkn...............................enkvikieked 65 lkd+++++++ + + G ++GKS++++++ l+ + + + k +ki +e 23726_FusoPortal_Gene_914 18 LKDISLNVKSGeIVGIFGSSGCGKSTLAKIIAGILKPS---KgtilvdgkelekegycsvqliyqhpekatnpKWKMDKILNEG 98 67888888877788899*******************99...3336777777777888888888888888764422233333333 PP AAA_15 66 lekfeniseskeikIdvef......................liefeyledkkkilklksk...kkskeyestlkskgkkkadll 124 + ++++++ k++ I+ + + +++yl+ +++ + l++ k +k+ + t+k+k++ ++ 23726_FusoPortal_Gene_914 99 W--MVDNETIKKMGIKNYWltrwpqelsggelqrfcitralGPKTKYLIADEITTMLDALtqvKIWKNLIATAKEKNIG---MI 177 3..2446666666666666677777777777888877777755666666666666666655555555555555555544...44 PP AAA_15 125 lkkkekdlkklikdkk 140 + +k l +i dk+ 23726_FusoPortal_Gene_914 178 VVTHNKFLADRICDKI 193 4444445555555555 PP >> AAA_16 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 0.1 4.8e-05 0.034 21 60 .. 27 65 .. 18 159 .. 0.81 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 4.8e-05 AAA_16 21 sgrpelvllsGesGvGKsslvrellralekdg.giflrgkc 60 sg e+v + G sG+GKs+l++ ++ l+ ++ i++ gk 23726_FusoPortal_Gene_914 27 SG--EIVGIFGSSGCGKSTLAKIIAGILKPSKgTILVDGKE 65 44..8999*************99998888885255566665 PP >> AAA_23 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 1.7 7e-05 0.049 11 43 .. 19 52 .. 2 173 .. 0.82 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 7e-05 AAA_23 11 rdqeidF.skgltlItGpNGaGKTTildAiklaL 43 +d +++ s ++ I+G G+GK+T+ i +L 23726_FusoPortal_Gene_914 19 KDISLNVkSGEIVGIFGSSGCGKSTLAKIIAGIL 52 5555555566799*************99998877 PP >> Mg_chelatase Magnesium chelatase, subunit ChlI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 8.8e-05 0.061 27 51 .. 33 57 .. 20 90 .. 0.83 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 8.8e-05 Mg_chelatase 27 lvGppGsGKtmlakrlpsllpplse 51 ++G++G+GK+ lak ++++l p + 23726_FusoPortal_Gene_914 33 IFGSSGCGKSTLAKIIAGILKPSKG 57 78******************98764 PP >> AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.0 0.00047 0.33 2 51 .. 31 63 .. 30 82 .. 0.75 2 ? 1.1 0.0 0.36 2.5e+02 264 301 .. 147 185 .. 110 187 .. 0.82 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00047 AAA_21 2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldl 51 ++ G g+GKS+L +++ ++ +++k + l d+ 23726_FusoPortal_Gene_914 31 VGIFGSSGCGKSTLAKIIAGIL-----------------KPSKGTILVDG 63 689***************9885.................44444444444 PP == domain 2 score: 1.1 bits; conditional E-value: 0.36 AAA_21 264 DEpEngLHPkllrrll.ellkelsrngaQviltTHSpll 301 DE+ + L+ + +++ l+ ++++++ i++TH+ +l 23726_FusoPortal_Gene_914 147 DEITTMLDALTQVKIWkNLIATAKEKNIGMIVVTHNKFL 185 888888999999999988886666689********9777 PP >> Rad17 Rad17 cell cycle checkpoint protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.2 0.0001 0.072 36 71 .. 19 54 .. 15 62 .. 0.85 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 0.0001 Rad17 36 kadvLesrkkriLLisGPsGCgkstvvkvLskelgi 71 k +L+ + +i+ i G sGCgkst k+++ +l + 23726_FusoPortal_Gene_914 19 KDISLNVKSGEIVGIFGSSGCGKSTLAKIIAGILKP 54 55677888888999****************999876 PP >> AAA_24 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 0.2 0.0009 0.63 5 22 .. 31 48 .. 27 78 .. 0.82 2 ? 2.6 0.1 0.13 91 107 133 .. 145 173 .. 140 185 .. 0.88 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.0009 AAA_24 5 iliyGpsgiGKTtlakel 22 + i+G+sg GK+tlak + 23726_FusoPortal_Gene_914 31 VGIFGSSGCGKSTLAKII 48 689************987 PP == domain 2 score: 2.6 bits; conditional E-value: 0.13 AAA_24 107 laeefrrllkklqelrk..nvifiahekt 133 +a+e++ +l++l++++ n i++a+ek 23726_FusoPortal_Gene_914 145 IADEITTMLDALTQVKIwkNLIATAKEKN 173 6899999********99999999999985 PP >> Zeta_toxin Zeta toxin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 0.00019 0.13 19 54 .. 31 66 .. 17 85 .. 0.86 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.00019 Zeta_toxin 19 illgGqpGAGKselaellkdelerqgnvvrldpDdl 54 + + G++G+GKs+la+ ++ l++ ++ + +d+ +l 23726_FusoPortal_Gene_914 31 VGIFGSSGCGKSTLAKIIAGILKPSKGTILVDGKEL 66 55679******************9999999998665 PP >> PhoH PhoH-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 0.1 0.001 0.72 16 40 .. 25 49 .. 17 57 .. 0.84 2 ? 0.7 0.0 0.42 2.9e+02 140 202 .. 133 195 .. 121 198 .. 0.71 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.001 HHH-SEEEEE--TTSSTTHHHHHHH CS PhoH 16 lkkndivfaiGpaGtGKtylavala 40 +k+ +iv ++G++G+GK+ la +a 23726_FusoPortal_Gene_914 25 VKSGEIVGIFGSSGCGKSTLAKIIA 49 56789***************97765 PP == domain 2 score: 0.7 bits; conditional E-value: 0.42 HTT.B-TT-EEEEEE--------------THHHHHHTTT-TTEEEEE--GGG----HHHHHHHH CS PhoH 140 ltR.lGenskvvvtGdvtqidlpkgkksGlaealevlknvegieivelkkkdvvRhplvkkivk 202 +tR lG ++k ++ ++t + ++ + ++++ ++k+ ++i+++ +++++ + ++++ ki++ 23726_FusoPortal_Gene_914 133 ITRaLGPKTKYLIADEITTMLDALTQVKIWKNLIATAKE-KNIGMIVVTHNKFLADRICDKIIN 195 555468888888888887776666656666666666555.888888888998888888888876 PP >> ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.5 0.00026 0.18 10 37 .. 24 51 .. 18 188 .. 0.85 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00026 -EBTT-EEEEEESTTSSHHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ATP-synt_ab 10 pivqGqrtlipgafgvGktvisqslskq 37 + G+ ++i+g +g+Gk+++++ ++ 23726_FusoPortal_Gene_914 24 NVKSGEIVGIFGSSGCGKSTLAKIIAGI 51 56789999*************9877654 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 0.0 0.00052 0.36 16 115 .. 27 172 .. 21 183 .. 0.73 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00052 AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaa.g......................grviglAptgkaAkvLaeelgieastiakl 76 sg+ ++ + G G GK+t+ k ++ +++ + g ++ + p+ k+ k L+e+ ++ +ti+k+ 23726_FusoPortal_Gene_914 27 SGE-IVGIFGSSGCGKSTLAKIIAGILKPSkGtilvdgkelekegycsvqliyqHPEKATNPKWKMDKILNEGWMVDNETIKKM 109 554.88999*******************99559999999999999988777766666677788888888888888888888887 PP AAA_30 77 lkrlk...................grarlepg.tllivDEagmv.....dtkqlaallkaaeka 115 ++ +l p+ + li DE+ + k +++l++ a+++ 23726_FusoPortal_Gene_914 110 GIKNYwltrwpqelsggelqrfciT-RALGPKtKYLIADEITTMldaltQVKIWKNLIATAKEK 172 7555567777788889999888853.56777778889999765444333444455555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (204 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 693 (0.0414672); expected 334.2 (0.02) Passed bias filter: 538 (0.0321924); expected 334.2 (0.02) Passed Vit filter: 98 (0.00586405); expected 16.7 (0.001) Passed Fwd filter: 24 (0.00143609); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 24 [number of targets reported over threshold] # CPU time: 0.29u 0.24s 00:00:00.53 Elapsed: 00:00:00.31 # Mc/sec: 1913.01 // [ok]