# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_917.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_917 [L=255] Description: # 1021306 # 1022070 # 1 # ID=1_917;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.213 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-32 112.2 0.1 3.5e-32 111.7 0.1 1.3 1 ABC_tran ABC transporter 2e-07 31.0 4.3 7.8e-05 22.5 0.5 2.4 2 AAA_21 AAA domain, putative AbiEii toxin, Type IV TA s 1.4e-05 24.6 4.7 4.3e-05 23.0 4.7 1.8 1 SMC_N RecF/RecN/SMC N terminal domain 4.4e-05 24.0 10.1 6.5e-05 23.4 10.1 1.5 1 AAA_23 AAA domain 0.0016 18.3 0.8 0.0028 17.5 0.2 1.7 2 RsgA_GTPase RsgA GTPase 0.0021 16.7 2.0 0.23 10.0 0.1 2.1 2 AAA_13 AAA domain 0.0062 15.3 0.1 0.012 14.4 0.1 1.4 2 DLIC Dynein light intermediate chain (DLIC) 0.0082 15.7 0.1 0.016 14.8 0.1 1.5 1 AAA_29 P-loop containing region of AAA domain 0.0092 16.3 0.0 0.021 15.1 0.0 1.6 1 AAA_16 AAA ATPase domain ------ inclusion threshold ------ 0.018 15.1 0.1 0.35 11.0 0.1 2.2 1 SbcCD_C Putative exonuclease SbcCD, C subunit 0.019 15.2 0.2 0.04 14.1 0.2 1.6 1 AAA_19 AAA domain 0.048 13.5 1.1 4.1 7.2 0.1 2.3 2 NTPase_1 NTPase 0.065 13.6 1.0 0.49 10.7 1.0 2.2 1 AAA ATPase family associated with various cellular 0.094 12.9 3.1 1.1 9.5 3.1 2.1 1 AAA_22 AAA domain 0.096 12.0 0.0 0.16 11.2 0.0 1.3 1 Mg_chelatase Magnesium chelatase, subunit ChlI 0.18 11.4 0.0 0.37 10.4 0.0 1.5 2 AAA_30 AAA domain 0.31 10.8 1.8 1.5 8.6 0.5 2.0 2 NACHT NACHT domain Domain annotation for each model (and alignments): >> ABC_tran ABC transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 111.7 0.1 3.6e-35 3.5e-32 1 136 [. 18 165 .. 18 166 .. 0.90 Alignments for each domain: == domain 1 score: 111.7 bits; conditional E-value: 3.6e-35 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTEEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH.... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.... RF ABC_tran 1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren.... 79 l+n+s++++ g+++ i+G nGaGK+tL+k++ g lk ++Ge+l+d+k++++++l++ +k ++++pq ++++ +ltv ++ 23726_FusoPortal_Gene_917 18 LNNISFEVYSGTLLSILGANGAGKTTLIKCINGILKLKKGEVLIDEKNFNNKSLKEKSKIMSYVPQItSSFDIDLTVFDTvllg 101 79****************************************************************97888889********** PP ...........HHHTCHHHHHHCSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS ...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ABC_tran 80 ...........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136 ++++ + + ++kl+l++ + v +LSgG+kqrv +aral ++pk+l+lDEp 23726_FusoPortal_Gene_917 102 rvphktfkfteWDKQIALNNIKKLDLEKYLFNYV----GELSGGEKQRVLIARALTQEPKILILDEPI 165 ***8888766555555666666666666666666....*****************************7 PP >> AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.5 0.5 8e-08 7.8e-05 4 83 .. 33 95 .. 30 132 .. 0.60 2 ! 9.9 0.2 0.00057 0.56 236 291 .. 137 189 .. 134 228 .. 0.82 Alignments for each domain: == domain 1 score: 22.5 bits; conditional E-value: 8e-08 AAA_21 4 liGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv 83 + G+Ng+GK++L++++ ++ +++k + l+d+++++ ++ e ++ s + ++ +++++ + 23726_FusoPortal_Gene_917 33 ILGANGAGKTTLIKCINGIL-----------------KLKKGEVLIDEKNFNNKSLKEKSKIMSYVPQITSSFDIDLTVF 95 89***************997.................4444444444444444444444444444444444444443333 PP == domain 2 score: 9.9 bits; conditional E-value: 0.00057 AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQ 291 elS G k+ l++ l + + ++l++DEp ++L+ k++ + +++lk+l++++ 23726_FusoPortal_Gene_917 137 ELSGGEKQR-VLIARALTQEP--KILILDEPISNLDLKFQLETMKILKNLAKEDNL 189 677777777.45555555555..8*****************999999999885544 PP >> SMC_N RecF/RecN/SMC N terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.0 4.7 4.4e-08 4.3e-05 12 200 .. 11 197 .. 1 217 [. 0.73 Alignments for each domain: == domain 1 score: 23.0 bits; conditional E-value: 4.4e-08 SEECEEEEE-TT.....SSEEEEEESTTSSHHHHHHHHHHHHTT.TSSS--HHHHCCCT--...SSSSSTTCCEEEECEEECCE CS xxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF SMC_N 12 syagktvilpfs.....ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk..skekasvkkaeveitfdnedk 88 sy++k++ ++s + +i+G+NG+GK+ l+ i G l+ +k + li + ++k+ +k ++ ++ + + 23726_FusoPortal_Gene_917 11 SYKNKEILNNISfevysGTLLSILGANGAGKTTLIKCIN---G-----ILKLKKGEVLIDEknFNNKSLKEKSKIMSYVPQITS 86 5666655554431111145678****************3...3.....577788889998865566666677788877777777 PP E-B----BE.EEEEEEETTT-EEEEETTEEE-HHHHHHH.HHCTT--.TTCS-HHHHHHHHHHHHHHHHTCS--SEEEECSTTT CS xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 89 klkiekeev.sisrrvkrkgeseykingkevtkkevsel.lesagis.kelLSgGektLvalaLlfAiqkvkpaplyllDeida 169 ++ i+ + + ++ + +++ +++ +k++ +++++l le+ ++ +LSgGek+ v +A + + +lDe + 23726_FusoPortal_Gene_917 87 SFDIDLTVFdTVLLGRVPHKTFKFTEWDKQIALNNIKKLdLEKYLFNyVGELSGGEKQRVL----IARALTQEPKILILDEPIS 166 777776664145555666777788888888999999987677777763579******9554....444455666799******* PP TS-HHHHHHHHHHHHHHCCTSEEEEE-SSHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 170 aLDeknvkkvaellkeksknaQfivislree 200 +LD k + ++lk+ k+ +ivi++ ++ 23726_FusoPortal_Gene_917 167 NLDLKFQLETMKILKNLAKEDNLIVITILHD 197 ***************************9765 PP >> AAA_23 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.4 10.1 6.6e-08 6.5e-05 1 130 [. 2 144 .. 2 250 .. 0.57 Alignments for each domain: == domain 1 score: 23.4 bits; conditional E-value: 6.6e-08 AAA_23 1 kLkienf.rsfrdqe....idF...skgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiese.....gkv 71 kL+i+n+ s++++e i F s l I G NGaGKTT++ +i +L ++++ ++++f++ + + +s+ + 23726_FusoPortal_Gene_917 2 KLEIKNLsFSYKNKEilnnISFevySGTLLSILGANGAGKTTLIKCINGILKLKKGE-VLIDEKNFNNKSLKEKSKimsyvPQI 84 6888888568888763334688999999***********************998655.44557788877777666555555344 PP AAA_23 72 kayveltfenkdgrytrsiererekskkkgkttkkaklelleideleqfise....llgskki 130 ++++++++ d + + r +k+ k ++ k+ +l+++++ +le+++ + l g +k+ 23726_FusoPortal_Gene_917 85 TSSFDIDLTVFDT---VLLGRVPHKTFKFTEWDKQIALNNIKKLDLEKYLFNyvgeLSGGEKQ 144 4444444333333...23444444444444444444444444444443333322212222222 PP >> RsgA_GTPase RsgA GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 0.2 2.9e-06 0.0028 75 130 .. 3 59 .. 1 67 [. 0.87 2 ? -2.4 0.0 3.7 3.7e+03 13 40 .. 183 210 .. 164 215 .. 0.73 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 2.9e-06 TTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS RsgA_GTPase 75 lgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130 l+++ l s k+ke l++++ ++ + + ++G G+GK+tLi+ +++ l+lk gev 23726_FusoPortal_Gene_917 3 LEIKNLSFSYKNKEILNNISFEVYSgTLLSILGANGAGKTTLIKCINGILKLKKGEV 59 567778889999999****98887758999******************999999988 PP == domain 2 score: -2.4 bits; conditional E-value: 3.7 EES--EEEEEEESTTTT--HHHHHHHHH CS RsgA_GTPase 13 vaNvdqllivvslkepelslnlldrfLv 40 a d+l++++ l++ ++ + d++L+ 23726_FusoPortal_Gene_917 183 LAKEDNLIVITILHDLNFAISYSDKILF 210 5666788888888877777777777775 PP >> AAA_13 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.0 0.1 0.00023 0.23 21 40 .. 33 52 .. 32 98 .. 0.68 2 ! 6.5 0.4 0.0026 2.6 525 574 .. 154 201 .. 137 241 .. 0.75 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00023 AAA_13 21 iYGwNGaGKTtLSrllrsle 40 i G+NGaGKTtL + ++ + 23726_FusoPortal_Gene_917 33 ILGANGAGKTTLIKCINGIL 52 77**********99998753 PP == domain 2 score: 6.5 bits; conditional E-value: 0.0026 AAA_13 525 gkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLT..Hnleff 574 ++ ki ++D P+S LD +++ + +k+ + k+++ l++ T H l+f 23726_FusoPortal_Gene_917 154 QEPKILILDEPISNLDLKFQLETMKILKNLA-KEDN---LIVITilHDLNFA 201 5899*****************9999999998.3333...3333333777775 PP >> DLIC Dynein light intermediate chain (DLIC) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.1 1.2e-05 0.012 22 56 .. 25 59 .. 6 68 .. 0.85 2 ? -3.6 0.0 3.5 3.5e+03 275 298 .. 142 165 .. 130 169 .. 0.85 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.2e-05 DLIC 22 lPsgksvlvlGedgsGkttliaklqGveeekkGrG 56 + sg + +lG +g+Gkttli + G+ + kkG 23726_FusoPortal_Gene_917 25 VYSGTLLSILGANGAGKTTLIKCINGILKLKKGEV 59 567777889************************86 PP == domain 2 score: -3.6 bits; conditional E-value: 3.5 DLIC 275 ekdavliPaGwdnekkiailyenl 298 ek vli +e ki il e + 23726_FusoPortal_Gene_917 142 EKQRVLIARALTQEPKILILDEPI 165 899999999999999999999866 PP >> AAA_29 P-loop containing region of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.1 1.6e-05 0.016 22 46 .. 27 52 .. 13 70 .. 0.80 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 1.6e-05 AAA_29 22 kg.vtlltGpsGsGKSTllDAiqalL 46 +g + G++G+GK+Tl+ i+ +L 23726_FusoPortal_Gene_917 27 SGtLLSILGANGAGKTTLIKCINGIL 52 34466789***********8887665 PP >> AAA_16 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.0 2.1e-05 0.021 25 161 .. 29 186 .. 15 193 .. 0.57 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 2.1e-05 AAA_16 25 elvllsGesGvGKsslvrellralekdggif.lrgkcdql....esa...ipy........salaqalareellrqllde...a 89 l+ + G+ G GK++l++++ l+ ++g + + +k+ + e + ++y ++ ++++++ ll + 23726_FusoPortal_Gene_917 29 TLLSILGANGAGKTTLIKCINGILKLKKGEVlIDEKNFNNkslkE-KskiMSYvpqitssfDIDLTVFDT-VLL-----GrvpH 105 6899*****************999988766668888888844431.134544422111111222333322.222.....24443 PP AAA_16 90 esaeleawrekleeala...........avpelagaeasrllellkrllallsrderplvlvlD....dlq.wadeaslqllaa 157 ++ ++ +w++++ + v+el+g e++r+l + ++ + ++p +l+lD +l+ +++ +++++l++ 23726_FusoPortal_Gene_917 106 KTFKFTEWDKQIALNNIkkldlekylfnYVGELSGGEKQRVLIA------RALT-QEPKILILDepisNLDlKFQLETMKILKN 182 44467777776554433555555555555555555544444433......3334.55677777755555555555566666666 PP AAA_16 158 Llrl 161 L+++ 23726_FusoPortal_Gene_917 183 LAKE 186 6665 PP >> SbcCD_C Putative exonuclease SbcCD, C subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.1 0.00035 0.35 30 89 .. 135 181 .. 118 182 .. 0.77 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.00035 SbcCD_C 30 sgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 +g+lSGGekq + +a ++++ +++++LDE s+lD +++ + +++l+ 23726_FusoPortal_Gene_917 135 VGELSGGEKQRV---LIA----RALTQ------EPKILILDEPISNLDLKFQLETMKILK 181 678888888543...233....22333......589***************999999987 PP >> AAA_19 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.2 4.1e-05 0.04 10 133 .. 28 190 .. 19 202 .. 0.58 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 4.1e-05 AAA_19 10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae........atTiHrlal........ 77 ++l +++ G GKT+++k+i +l+ +g+ i f++++ ke ++ ++ + + + + 23726_FusoPortal_Gene_917 28 GTLLSILGANGAGKTTLIKCINGILKLKKGE--VLIDEKNFNNKSLKEKSKIMSYVPQItssfdidlT-------Vfdtvllgr 102 567889*****************99999877..56777788888888888877444333333443330.......244444555 PP AAA_19 78 ......................ldfddlltealelle......eaeeekklqeee.llivDE.fqdvd.elq...yrLlkallg 127 ld+++ l + ++ l + l++e +li DE ++++d + q +++lk+l++ 23726_FusoPortal_Gene_917 103 vphktfkftewdkqialnnikkLDLEKYLFNYVGELSggekqrV-LIARALTQEPkILILDEpISNLDlKFQletMKILKNLAK 185 55555555555555555554443333333333333336655431.223333333337788875566665444111456666664 PP AAA_19 128 ekkkll 133 e++ l+ 23726_FusoPortal_Gene_917 186 EDN-LI 190 444.55 PP >> NTPase_1 NTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 0.1 0.0041 4.1 4 25 .. 33 54 .. 31 87 .. 0.89 2 ? 5.1 0.1 0.018 17 87 152 .. 147 216 .. 112 237 .. 0.69 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0041 EE--TTSSHHHHHHHHHHHH.. CS NTPase_1 4 iTGppGvGKtTlvkkvlellks 25 i G G GKtTl+k + lk 23726_FusoPortal_Gene_917 33 ILGANGAGKTTLIKCINGILKL 54 66999*********99888865 PP == domain 2 score: 5.1 bits; conditional E-value: 0.018 HHHHHHHHHH-EEEE--.-STTGGG-HHHHHHHHHHHT.TTSEEEEE--SS-..-SHHHHHHHT-TT-EE CS NTPase_1 87 ealrkalseadviviDE.iGkmElkskkfkeaveevLk.sekpvlavihrrk..dlalveeirerkdvkv 152 + r +e+ ++++DE i ++ lk + ++ + L+ +++ ++++i + + ++i k++k+ 23726_FusoPortal_Gene_917 147 LIARALTQEPKILILDEpISNLDLKFQLETMKILKNLAkEDNLIVITILHDLnfAISYSDKILFLKNGKI 216 33444448999******9*******998888887777756666666665443355555666655555555 PP >> AAA ATPase family associated with various cellular activities (AAA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 1.0 0.0005 0.49 3 66 .. 33 163 .. 31 194 .. 0.67 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.0005 EESSTTSSHHHHHHHHHHHHTHE.................EEEEETTTCCSS................................ CS AAA 3 lyGppGtGKTllakavakelgve.................fleisgsellsk................................ 37 + G G GKT+l+k + l+ + k 23726_FusoPortal_Gene_917 33 ILGANGAGKTTLIKCINGILKLKkgevlideknfnnkslkE----------Kskimsyvpqitssfdidltvfdtvllgrvphk 106 57999**************9755443433333333333330..........244555566666666666666666666666666 PP ...........................STTHHHH..HHHHHHHHHHHTSTSEEEEEET CS AAA 38 ...........................yvgesek..kirelfkeakekakpsilfiDE 66 yvge + k r l+++a ++ +p+il++DE 23726_FusoPortal_Gene_917 107 tfkftewdkqialnnikkldlekylfnYVGELSGgeKQRVLIARALTQ-EPKILILDE 163 666666666666666777777777777888866511455555555444.589999998 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 3.1 0.0011 1.1 5 125 .. 28 191 .. 24 200 .. 0.54 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.0011 AAA_22 5 agilvvtGesGtGKTtllrrlleqldeeakaee...............erpevvfvtlpsst.....sskdllrellralglel 68 ++l + G G+GKTtl++ + l+ + ++++ + ++p+ t +++ + + ll + 23726_FusoPortal_Gene_917 28 GTLLSILGANGAGKTTLIKCINGILKLK----KgevlideknfnnkslKEKSKIMSYVPQITssfdiDLTVFDTVLLGRV---- 103 678999*************998887432....223456566666666633333333333333011223333333333333.... PP AAA_22 69 ka...........................erlsseellealeqalrarav...........ielliiDE.aqhlrs.eealeeL 112 +++ + + + +++li+DE + +l + +le+ 23726_FusoPortal_Gene_917 104 -PhktfkftewdkqialnnikkldlekylF--------NYVGELSGGEKQrvliaraltqePKILILDEpISNL-DlKFQLETM 177 .24445588888888887775333333330........444444444444444444455555588888844448.446666666 PP AAA_22 113 rsllnl.srkgvql 125 ++l nl +++++ + 23726_FusoPortal_Gene_917 178 KILKNLaKEDNLIV 191 66666554555555 PP >> Mg_chelatase Magnesium chelatase, subunit ChlI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 0.00016 0.16 25 58 .. 31 64 .. 22 87 .. 0.70 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00016 Mg_chelatase 25 lllvGppGsGKtmlakrlpsllpplseeealeva 58 l ++G+ G+GKt l+k+++++l + e ++ + 23726_FusoPortal_Gene_917 31 LSILGANGAGKTTLIKCINGILKLKKGEVLIDEK 64 5578*****************9654444444433 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 0.0 0.00037 0.37 20 50 .. 30 60 .. 24 77 .. 0.86 2 ? -3.3 0.0 5.7 5.6e+03 14 96 .. 152 163 .. 133 188 .. 0.67 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00037 AAA_30 20 vavltGpAGtGKttalkalreaweaaggrvi 50 + + G+ G+GKtt++k ++ +++ ++g+v+ 23726_FusoPortal_Gene_917 30 LLSILGANGAGKTTLIKCINGILKLKKGEVL 60 66788**************999988876665 PP == domain 2 score: -3.3 bits; conditional E-value: 5.7 AAA_30 14 ltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepg.tllivDE 96 lt+ + ++li DE 23726_FusoPortal_Gene_917 152 LTQ------------------------------------------------------------------------EpKILILDE 163 332........................................................................225555555 PP >> NACHT NACHT domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.6 0.5 0.0015 1.5 3 21 .. 31 49 .. 29 61 .. 0.80 2 ? 1.3 0.0 0.27 2.7e+02 27 88 .. 101 162 .. 94 193 .. 0.79 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.0015 NACHT 3 vilqGeaGsGKTtLlqkla 21 + + G++G GKTtL++ + 23726_FusoPortal_Gene_917 31 LSILGANGAGKTTLIKCIN 49 6799**********99875 PP == domain 2 score: 1.3 bits; conditional E-value: 0.27 NACHT 27 gklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvse.vwavllelperlLlilD 88 g+ p+++fk+ + ++ +l+ +++ l ++lf e+++ ++ v + ++ +e lilD 23726_FusoPortal_Gene_917 101 GRVPHKTFKFTEWDKQIALNNIKKL-DLEKYLFNYVGELSGGEKQrVLIARALTQEPKILILD 162 5667777888888888888899888.9999999999988766655477777778888888888 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (255 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 795 (0.0475706); expected 334.2 (0.02) Passed bias filter: 416 (0.0248923); expected 334.2 (0.02) Passed Vit filter: 67 (0.0040091); expected 16.7 (0.001) Passed Fwd filter: 17 (0.00101723); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 17 [number of targets reported over threshold] # CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.34 # Mc/sec: 2180.27 // [ok]