# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_935.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_935 [L=267] Description: # 1043014 # 1043814 # -1 # ID=1_935;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.271 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.4e-25 88.6 0.0 3.4e-24 85.7 0.0 1.9 1 FGE-sulfatase Sulfatase-modifying factor enzyme 1 Domain annotation for each model (and alignments): >> FGE-sulfatase Sulfatase-modifying factor enzyme 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.7 0.0 2e-28 3.4e-24 4 259 .. 4 259 .. 1 260 [. 0.79 Alignments for each domain: == domain 1 score: 85.7 bits; conditional E-value: 2e-28 TEEEE--EEEEES---S-GGG---S-EEEEE--EEEESS--BHHHHHHHHHHH----HSSETTEEEEET-BTTBTTSTT---TT CS FGE-sulfatase 4 emvlipgGsfemGseektandeeapahevtvraFaidkteVTnaqyaafveatgyeteaasqwwaeveganvrhpegrksdikk 87 +mv+++gG++++ e+ ev+ + +++k+ VT++ + +++ +p+ ++ 23726_FusoPortal_Gene_935 4 DMVFVKGGKYKL---------YENNNIEVETFDLEVSKYLVTQKLWTDIMGR---------------------NPSI---VKDI 54 566666666664.........2222233444455666666666666666666.....................3443...4567 PP -TTSB--S--HHHHHHHHHHHT-....................................................B---HHHHH CS FGE-sulfatase 88 radhPvvhVsweDavaYArwlgkktg..............................................egyrLPteaEwe 125 +Pv++++w+ a +++++l++ +g egyrLPt Ewe 23726_FusoPortal_Gene_935 55 LGMKPVENITWWHALQFCNKLSELEGlrpvydlsqikkgklyinqlnneksidyyedflidkngkigdfsktEGYRLPTSIEWE 138 7899*******************999********************************************************** PP HHHHTT-SS.-SBTTBS-SSGGGB---SSTTT-B--TTS...-SS.---TT-S-B-TTS-B-SSBSSEEEEEEE--THHHH--S CS FGE-sulfatase 126 yAArggkkg.reypwgdelkpakniwqGslakfekeaaaadsqngrtspvgsfppnalGlyDmaGNvwEWtsdwykkyalapae 208 A gg+k+ +e ++g +++++n ++ ++++ ++ ++t + g++ +n+lG++D +GNv+EW+ d ++ ++++ + 23726_FusoPortal_Gene_935 139 WFAGGGQKAiNEGTFGHIFYKRDN------LDKIAWYCD--NSFFTTHDPGEKMANELGIFDYIGNVYEWCHD--QRCEFKKFK 212 *99999965166666666665444......233344444..34445899************************..56799**** PP BS----S--SSEEEES--TT--TT--TTSTT-E.EEE-TT--BTTEEE--E CS FGE-sulfatase 209 elsqeaekgelrvvkGgswlkaelssllraafrasaetpdtaasdvGfRlv 259 e + + + + ++v+ Ggs+ +++ +++ + +++ +++ ++GfR + 23726_FusoPortal_Gene_935 213 EEKGNTFYNMYKVIMGGSFCSDP-YDFYPFTIS---YPSIKSSVEIGFRFI 259 *********************95.556555555...567888999999987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (267 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 583 (0.0348851); expected 334.2 (0.02) Passed bias filter: 434 (0.0259694); expected 334.2 (0.02) Passed Vit filter: 38 (0.00227382); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.26u 0.24s 00:00:00.50 Elapsed: 00:00:00.32 # Mc/sec: 2425.55 // [ok]