# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_949.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_949 [L=134] Description: # 1056309 # 1056710 # 1 # ID=1_949;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.351 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-43 147.9 0.8 2e-43 147.7 0.8 1.0 1 Ribosomal_S9 Ribosomal protein S9/S16 Domain annotation for each model (and alignments): >> Ribosomal_S9 Ribosomal protein S9/S16 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 147.7 0.8 1.2e-47 2e-43 1 120 [] 12 133 .. 12 133 .. 0.99 Alignments for each domain: == domain 1 score: 147.7 bits; conditional E-value: 1.2e-47 EEETTEEEEEEEEESSSEEEETTEEHHHHS.TTSGGGGGGGHHHHHTTTSSSEEEEEEEESS-HHHHHHHHHHHHHHHHHHH-G CS Ribosomal_S9 1 GrrKesvArvwikegkgkilvngksleeYf.keealrekvleplkltgllgkfdvfvkvkgGGlsgqaeAirlgiaraLvalek 83 GrrK+svArv++++g + + +ngk ++eYf + l v +pl+lt++l+kf v+v+v gGG sgqa+Air+g+araL+ ++ 23726_FusoPortal_Gene_949 12 GRRKTSVARVRLIPGGQGVEINGKAMDEYFgGRAILSRIVEQPLALTETLNKFAVKVNVVGGGNSGQAGAIRHGVARALLLADE 95 9*****************************999999**********************************************99 PP G.HHHHTTTTTTS-B--------TTSSBTTB----S-- CS Ribosomal_S9 84 e.kkeLkkaglltrDpRvverkKtgkkkARkkyqwskR 120 + k++L++ag+ltrD+R+verkK+gkkkAR+++q+skR 23726_FusoPortal_Gene_949 96 SlKEALREAGFLTRDSRMVERKKYGKKKARRSPQFSKR 133 88***********************************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (134 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 310 (0.0185495); expected 334.2 (0.02) Passed bias filter: 241 (0.0144208); expected 334.2 (0.02) Passed Vit filter: 20 (0.00119674); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.22u 0.23s 00:00:00.45 Elapsed: 00:00:00.31 # Mc/sec: 1256.59 // [ok]